Wall clock time and date at job start Mon Mar 30 2020 00:41:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53005 * 109.46612 * 2 1 4 4 C 1.53004 * 109.46977 * 179.97438 * 3 2 1 5 5 H 1.08999 * 110.85267 * 308.79320 * 4 3 2 6 6 C 1.54628 * 110.99941 * 72.60206 * 4 3 2 7 7 C 1.51287 * 104.25677 * 142.71677 * 6 4 3 8 8 O 1.21274 * 124.94588 * 164.00706 * 7 6 4 9 9 N 1.34417 * 110.11106 * 344.14241 * 7 6 4 10 10 C 1.46497 * 124.35059 * 179.44252 * 9 7 6 11 11 N 1.46902 * 109.47159 * 269.69896 * 10 9 7 12 12 C 1.46899 * 110.99884 * 279.45233 * 11 10 9 13 13 C 1.46895 * 111.00375 * 155.49595 * 11 10 9 14 14 H 1.08997 * 109.47097 * 174.20503 * 13 11 10 15 15 C 1.52994 * 109.46929 * 54.20285 * 13 11 10 16 16 C 1.50704 * 109.46997 * 294.20564 * 13 11 10 17 17 H 1.08004 * 120.00008 * 359.97438 * 16 13 11 18 18 C 1.37880 * 119.99974 * 179.97438 * 16 13 11 19 19 N 1.31508 * 119.99820 * 0.02562 * 18 16 13 20 20 Si 1.86791 * 119.99885 * 180.02562 * 18 16 13 21 21 H 1.48499 * 109.47472 * 90.00307 * 20 18 16 22 22 H 1.48498 * 109.47331 * 210.00093 * 20 18 16 23 23 H 1.48498 * 109.47354 * 330.00056 * 20 18 16 24 24 C 1.46770 * 111.30163 * 359.17011 * 9 7 6 25 25 H 1.09002 * 109.47317 * 299.99829 * 1 2 3 26 26 H 1.08989 * 109.47467 * 60.00401 * 1 2 3 27 27 H 1.09001 * 109.46731 * 180.02562 * 1 2 3 28 28 H 1.08995 * 109.47528 * 239.99823 * 2 1 3 29 29 H 1.08997 * 109.46864 * 119.99440 * 2 1 3 30 30 H 1.09002 * 109.47140 * 60.00063 * 3 2 1 31 31 H 1.08998 * 109.46759 * 299.99785 * 3 2 1 32 32 H 1.09006 * 110.48457 * 261.60822 * 6 4 3 33 33 H 1.08999 * 110.48649 * 24.11877 * 6 4 3 34 34 H 1.09001 * 109.47688 * 149.70100 * 10 9 7 35 35 H 1.08995 * 109.46985 * 29.69677 * 10 9 7 36 36 H 1.08997 * 109.47131 * 296.04449 * 12 11 10 37 37 H 1.09002 * 109.47599 * 56.04579 * 12 11 10 38 38 H 1.09003 * 109.46896 * 176.04159 * 12 11 10 39 39 H 1.08993 * 109.47555 * 293.93726 * 15 13 11 40 40 H 1.09001 * 109.46851 * 173.93622 * 15 13 11 41 41 H 1.09000 * 109.46987 * 53.94673 * 15 13 11 42 42 H 0.97006 * 120.00266 * 179.97438 * 19 18 16 43 43 H 1.08998 * 110.24216 * 136.28046 * 24 9 7 44 44 H 1.08988 * 110.24890 * 258.28265 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 3.5700 1.4427 0.0006 5 1 3.9577 0.8047 0.7948 6 6 4.1247 1.0109 -1.3766 7 6 5.3474 1.8795 -1.5748 8 8 6.2212 1.6735 -2.3901 9 7 5.3259 2.9113 -0.7135 10 6 6.3665 3.9389 -0.6284 11 7 7.3898 3.5206 0.3389 12 6 6.9558 3.7936 1.7155 13 6 8.6781 4.1669 0.0552 14 1 9.3893 3.9213 0.8438 15 6 8.4857 5.6835 -0.0040 16 6 9.2059 3.6755 -1.2681 17 1 8.6410 2.9548 -1.8408 18 6 10.4100 4.1460 -1.7477 19 7 11.0980 5.0231 -1.0501 20 14 11.0638 3.5375 -3.3882 21 1 10.5695 4.4193 -4.4760 22 1 12.5485 3.5604 -3.3687 23 1 10.5933 2.1489 -3.6243 24 6 4.1226 2.8797 0.1263 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5137 -0.8899 27 1 -0.3633 -1.0277 0.0005 28 1 1.8934 -0.5138 -0.8899 29 1 1.8933 -0.5137 0.8900 30 1 1.6766 1.9564 0.8900 31 1 1.6766 1.9563 -0.8900 32 1 4.4006 -0.0436 -1.3632 33 1 3.3917 1.2025 -2.1602 34 1 5.9224 4.8798 -0.3034 35 1 6.8256 4.0730 -1.6078 36 1 6.8455 4.8689 1.8552 37 1 5.9997 3.3034 1.8991 38 1 7.7002 3.4108 2.4138 39 1 7.8598 5.9373 -0.8594 40 1 9.4561 6.1691 -0.1069 41 1 8.0042 6.0247 0.9125 42 1 11.9453 5.3539 -1.3873 43 1 4.3807 3.0952 1.1632 44 1 3.3894 3.5991 -0.2380 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000247362145.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:41:18 Heat of formation + Delta-G solvation = -37.105320 kcal Electronic energy + Delta-G solvation = -21552.396787 eV Core-core repulsion = 18504.491283 eV Total energy + Delta-G solvation = -3047.905504 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.12654 -37.09969 -36.66049 -34.63417 -32.68792 -31.41166 -28.80702 -27.97752 -26.97398 -25.34091 -24.86009 -23.24277 -21.88291 -20.55932 -19.71996 -18.73850 -16.65623 -16.35653 -15.95430 -15.19603 -14.93737 -14.75305 -13.99383 -13.86112 -13.71906 -13.56377 -13.39348 -13.12439 -12.79981 -12.70739 -12.22193 -11.96813 -11.84332 -11.63547 -11.42770 -11.37471 -10.97136 -10.88341 -10.84420 -10.76725 -10.66627 -10.56287 -10.41599 -10.07405 -9.84720 -9.22253 -8.89775 -8.39363 -8.21475 -7.22902 -5.94034 -3.95846 3.10700 3.40812 3.46227 3.52607 3.57443 4.36425 4.51431 4.53324 4.57876 4.87447 4.94218 5.10807 5.12239 5.22121 5.37400 5.38795 5.48795 5.56703 5.60962 5.61976 5.65916 5.70925 5.82540 5.86642 5.95575 5.99987 6.07863 6.11241 6.19054 6.39881 6.43642 6.72185 6.79233 6.95227 7.15576 7.35290 7.65729 7.70319 7.97698 8.12112 8.36395 8.61061 8.75549 9.16424 9.70151 11.13632 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.028824 B = 0.004627 C = 0.004126 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 971.186500 B = 6050.419690 C = 6784.972067 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.126 4.126 3 C -0.107 4.107 4 C -0.100 4.100 5 H 0.089 0.911 6 C -0.150 4.150 7 C 0.517 3.483 8 O -0.518 6.518 9 N -0.609 5.609 10 C 0.297 3.703 11 N -0.547 5.547 12 C 0.025 3.975 13 C 0.216 3.784 14 H 0.042 0.958 15 C -0.170 4.170 16 C -0.501 4.501 17 H 0.072 0.928 18 C 0.059 3.941 19 N -0.899 5.899 20 Si 0.896 3.104 21 H -0.282 1.282 22 H -0.289 1.289 23 H -0.271 1.271 24 C 0.104 3.896 25 H 0.053 0.947 26 H 0.053 0.947 27 H 0.052 0.948 28 H 0.064 0.936 29 H 0.062 0.938 30 H 0.067 0.933 31 H 0.066 0.934 32 H 0.095 0.905 33 H 0.097 0.903 34 H 0.041 0.959 35 H 0.108 0.892 36 H 0.018 0.982 37 H 0.049 0.951 38 H 0.059 0.941 39 H 0.029 0.971 40 H 0.087 0.913 41 H 0.008 0.992 42 H 0.259 0.741 43 H 0.074 0.926 44 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.843 -4.947 4.788 21.003 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.163 4.163 3 C -0.145 4.145 4 C -0.119 4.119 5 H 0.107 0.893 6 C -0.190 4.190 7 C 0.303 3.697 8 O -0.393 6.393 9 N -0.345 5.345 10 C 0.087 3.913 11 N -0.273 5.273 12 C -0.124 4.124 13 C 0.110 3.890 14 H 0.059 0.941 15 C -0.229 4.229 16 C -0.539 4.539 17 H 0.090 0.910 18 C -0.142 4.142 19 N -0.539 5.539 20 Si 0.724 3.276 21 H -0.209 1.209 22 H -0.215 1.215 23 H -0.196 1.196 24 C -0.020 4.020 25 H 0.072 0.928 26 H 0.072 0.928 27 H 0.071 0.929 28 H 0.083 0.917 29 H 0.081 0.919 30 H 0.085 0.915 31 H 0.085 0.915 32 H 0.114 0.886 33 H 0.115 0.885 34 H 0.059 0.941 35 H 0.126 0.874 36 H 0.037 0.963 37 H 0.067 0.933 38 H 0.077 0.923 39 H 0.048 0.952 40 H 0.106 0.894 41 H 0.027 0.973 42 H 0.069 0.931 43 H 0.093 0.907 44 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -19.051 -5.399 4.289 20.261 hybrid contribution 0.314 0.674 -0.543 0.921 sum -18.737 -4.724 3.746 19.683 Atomic orbital electron populations 1.21777 0.96003 1.01513 1.01729 1.21540 0.95631 0.96779 1.02380 1.21610 0.93303 0.97171 1.02444 1.22183 0.95707 0.96362 0.97621 0.89264 1.22443 0.97336 1.01186 0.98074 1.20723 0.86795 0.81449 0.80701 1.90765 1.39846 1.72274 1.36386 1.48523 1.21323 1.28000 1.36651 1.21781 0.84611 0.85276 0.99642 1.62029 1.04620 1.60234 1.00411 1.22400 0.99730 0.98003 0.92267 1.19295 0.83682 0.88284 0.97726 0.94065 1.22438 1.02854 1.01373 0.96275 1.21276 1.04751 1.24291 1.03587 0.91006 1.24902 0.96655 0.95079 0.97534 1.69902 1.14647 1.31125 1.38184 0.86511 0.77489 0.79702 0.83905 1.20854 1.21479 1.19581 1.22152 0.87168 0.96698 0.95972 0.92831 0.92785 0.92891 0.91719 0.91901 0.91470 0.91528 0.88617 0.88488 0.94149 0.87409 0.96326 0.93253 0.92251 0.95166 0.89412 0.97269 0.93149 0.90749 0.91700 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.95 9.91 37.16 0.37 -0.58 16 2 C -0.13 -0.87 5.83 -26.73 -0.16 -1.03 16 3 C -0.11 -0.79 4.57 -26.73 -0.12 -0.92 16 4 C -0.10 -0.99 3.12 -88.99 -0.28 -1.27 16 5 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 6 C -0.15 -1.85 5.89 -26.74 -0.16 -2.01 16 7 C 0.52 9.53 8.02 -10.86 -0.09 9.45 16 8 O -0.52 -12.38 17.58 5.56 0.10 -12.29 16 9 N -0.61 -10.39 3.12 -175.91 -0.55 -10.94 16 10 C 0.30 5.98 4.22 -63.32 -0.27 5.72 16 11 N -0.55 -12.02 4.80 -240.20 -1.15 -13.17 16 12 C 0.02 0.44 9.22 60.06 0.55 0.99 16 13 C 0.22 5.53 2.30 -68.87 -0.16 5.37 16 14 H 0.04 1.16 8.07 -51.93 -0.42 0.74 16 15 C -0.17 -4.07 8.20 37.15 0.30 -3.77 16 16 C -0.50 -14.38 7.63 -34.44 -0.26 -14.64 16 17 H 0.07 2.20 7.37 -52.48 -0.39 1.81 16 18 C 0.06 1.69 5.30 -17.82 -0.09 1.60 16 19 N -0.90 -26.18 11.39 55.43 0.63 -25.55 16 20 Si 0.90 22.82 29.54 -169.99 -5.02 17.80 16 21 H -0.28 -7.10 7.11 56.52 0.40 -6.70 16 22 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 23 H -0.27 -7.07 7.11 56.52 0.40 -6.67 16 24 C 0.10 1.23 6.71 -3.12 -0.02 1.21 16 25 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 26 H 0.05 0.33 8.14 -51.94 -0.42 -0.09 16 27 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 28 H 0.06 0.47 7.74 -51.93 -0.40 0.07 16 29 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 30 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.07 0.49 7.93 -51.93 -0.41 0.07 16 32 H 0.10 1.13 8.14 -51.93 -0.42 0.71 16 33 H 0.10 1.03 7.76 -51.93 -0.40 0.63 16 34 H 0.04 0.74 7.64 -51.93 -0.40 0.34 16 35 H 0.11 2.56 6.18 -51.93 -0.32 2.24 16 36 H 0.02 0.32 6.49 -51.93 -0.34 -0.02 16 37 H 0.05 0.75 5.68 -51.93 -0.30 0.46 16 38 H 0.06 1.06 8.12 -51.93 -0.42 0.64 16 39 H 0.03 0.70 7.11 -51.93 -0.37 0.33 16 40 H 0.09 2.32 6.26 -51.93 -0.32 2.00 16 41 H 0.01 0.18 6.45 -51.93 -0.33 -0.15 16 42 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 43 H 0.07 0.85 5.99 -51.93 -0.31 0.54 16 44 H 0.06 0.66 7.89 -51.94 -0.41 0.26 16 LS Contribution 340.64 15.07 5.13 5.13 Total: -1.00 -32.46 340.64 -8.88 -41.34 By element: Atomic # 1 Polarization: 5.18 SS G_CDS: -7.64 Total: -2.46 kcal Atomic # 6 Polarization: 0.51 SS G_CDS: -0.38 Total: 0.13 kcal Atomic # 7 Polarization: -48.59 SS G_CDS: -1.07 Total: -49.66 kcal Atomic # 8 Polarization: -12.38 SS G_CDS: 0.10 Total: -12.29 kcal Atomic # 14 Polarization: 22.82 SS G_CDS: -5.02 Total: 17.80 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -32.46 -8.88 -41.34 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000247362145.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.233 kcal (2) G-P(sol) polarization free energy of solvation -32.462 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.230 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.876 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.338 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.105 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds