Wall clock time and date at job start Mon Mar 30 2020 00:41:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53005 * 109.46612 * 2 1 4 4 C 1.53004 * 109.46977 * 179.97438 * 3 2 1 5 5 H 1.08999 * 110.85267 * 308.79320 * 4 3 2 6 6 C 1.54628 * 110.99941 * 72.60206 * 4 3 2 7 7 C 1.51287 * 104.25677 * 142.71677 * 6 4 3 8 8 O 1.21274 * 124.94588 * 164.00706 * 7 6 4 9 9 N 1.34417 * 110.11106 * 344.14241 * 7 6 4 10 10 C 1.46497 * 124.35059 * 179.44252 * 9 7 6 11 11 N 1.46902 * 109.47159 * 269.69896 * 10 9 7 12 12 C 1.46899 * 110.99884 * 279.45233 * 11 10 9 13 13 C 1.46895 * 111.00375 * 155.49595 * 11 10 9 14 14 H 1.08997 * 109.47097 * 174.20503 * 13 11 10 15 15 C 1.52994 * 109.46929 * 54.20285 * 13 11 10 16 16 C 1.50704 * 109.46997 * 294.20564 * 13 11 10 17 17 H 1.08004 * 120.00008 * 359.97438 * 16 13 11 18 18 C 1.37880 * 119.99974 * 179.97438 * 16 13 11 19 19 N 1.31508 * 119.99820 * 0.02562 * 18 16 13 20 20 Si 1.86791 * 119.99885 * 180.02562 * 18 16 13 21 21 H 1.48499 * 109.47472 * 90.00307 * 20 18 16 22 22 H 1.48498 * 109.47331 * 210.00093 * 20 18 16 23 23 H 1.48498 * 109.47354 * 330.00056 * 20 18 16 24 24 C 1.46770 * 111.30163 * 359.17011 * 9 7 6 25 25 H 1.09002 * 109.47317 * 299.99829 * 1 2 3 26 26 H 1.08989 * 109.47467 * 60.00401 * 1 2 3 27 27 H 1.09001 * 109.46731 * 180.02562 * 1 2 3 28 28 H 1.08995 * 109.47528 * 239.99823 * 2 1 3 29 29 H 1.08997 * 109.46864 * 119.99440 * 2 1 3 30 30 H 1.09002 * 109.47140 * 60.00063 * 3 2 1 31 31 H 1.08998 * 109.46759 * 299.99785 * 3 2 1 32 32 H 1.09006 * 110.48457 * 261.60822 * 6 4 3 33 33 H 1.08999 * 110.48649 * 24.11877 * 6 4 3 34 34 H 1.09001 * 109.47688 * 149.70100 * 10 9 7 35 35 H 1.08995 * 109.46985 * 29.69677 * 10 9 7 36 36 H 1.08997 * 109.47131 * 296.04449 * 12 11 10 37 37 H 1.09002 * 109.47599 * 56.04579 * 12 11 10 38 38 H 1.09003 * 109.46896 * 176.04159 * 12 11 10 39 39 H 1.08993 * 109.47555 * 293.93726 * 15 13 11 40 40 H 1.09001 * 109.46851 * 173.93622 * 15 13 11 41 41 H 1.09000 * 109.46987 * 53.94673 * 15 13 11 42 42 H 0.97006 * 120.00266 * 179.97438 * 19 18 16 43 43 H 1.08998 * 110.24216 * 136.28046 * 24 9 7 44 44 H 1.08988 * 110.24890 * 258.28265 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 3.5700 1.4427 0.0006 5 1 3.9577 0.8047 0.7948 6 6 4.1247 1.0109 -1.3766 7 6 5.3474 1.8795 -1.5748 8 8 6.2212 1.6735 -2.3901 9 7 5.3259 2.9113 -0.7135 10 6 6.3665 3.9389 -0.6284 11 7 7.3898 3.5206 0.3389 12 6 6.9558 3.7936 1.7155 13 6 8.6781 4.1669 0.0552 14 1 9.3893 3.9213 0.8438 15 6 8.4857 5.6835 -0.0040 16 6 9.2059 3.6755 -1.2681 17 1 8.6410 2.9548 -1.8408 18 6 10.4100 4.1460 -1.7477 19 7 11.0980 5.0231 -1.0501 20 14 11.0638 3.5375 -3.3882 21 1 10.5695 4.4193 -4.4760 22 1 12.5485 3.5604 -3.3687 23 1 10.5933 2.1489 -3.6243 24 6 4.1226 2.8797 0.1263 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5137 -0.8899 27 1 -0.3633 -1.0277 0.0005 28 1 1.8934 -0.5138 -0.8899 29 1 1.8933 -0.5137 0.8900 30 1 1.6766 1.9564 0.8900 31 1 1.6766 1.9563 -0.8900 32 1 4.4006 -0.0436 -1.3632 33 1 3.3917 1.2025 -2.1602 34 1 5.9224 4.8798 -0.3034 35 1 6.8256 4.0730 -1.6078 36 1 6.8455 4.8689 1.8552 37 1 5.9997 3.3034 1.8991 38 1 7.7002 3.4108 2.4138 39 1 7.8598 5.9373 -0.8594 40 1 9.4561 6.1691 -0.1069 41 1 8.0042 6.0247 0.9125 42 1 11.9453 5.3539 -1.3873 43 1 4.3807 3.0952 1.1632 44 1 3.3894 3.5991 -0.2380 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000247362145.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:41:17 Heat of formation + Delta-G solvation = -58.766017 kcal Electronic energy + Delta-G solvation = -21553.336065 eV Core-core repulsion = 18504.491283 eV Total energy + Delta-G solvation = -3048.844782 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.40460 -38.80856 -37.86970 -35.73316 -34.62869 -32.54038 -30.65958 -29.01557 -28.21585 -27.26095 -26.09314 -24.96533 -22.55159 -21.50368 -21.33488 -20.22838 -18.38062 -17.92299 -17.23370 -16.82785 -16.40122 -15.87077 -15.55263 -15.28483 -15.15320 -14.79408 -14.59127 -14.24298 -13.93779 -13.80743 -13.69847 -13.48626 -13.23235 -12.97604 -12.82097 -12.59638 -12.52474 -12.39571 -12.27704 -12.16612 -12.12629 -11.85434 -11.65757 -11.42182 -11.26590 -10.98480 -10.68239 -10.54651 -9.70085 -8.93088 -8.15585 -6.23266 1.34603 1.35305 1.49667 1.69221 2.19674 2.40682 3.13338 3.44878 3.50672 3.55709 3.81318 4.13471 4.20553 4.31537 4.39118 4.43605 4.47844 4.56482 4.61233 4.66666 4.71590 4.81281 4.86211 4.87703 4.89906 5.00922 5.02904 5.08914 5.10678 5.15633 5.28336 5.42868 5.44864 5.52376 5.61378 5.63596 5.68096 5.82131 6.14934 6.33579 6.42816 6.72206 6.90067 7.34922 7.45800 8.90515 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.028824 B = 0.004627 C = 0.004126 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 971.186500 B = 6050.419690 C = 6784.972067 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.127 4.127 3 C -0.099 4.099 4 C -0.084 4.084 5 H 0.093 0.907 6 C -0.137 4.137 7 C 0.498 3.502 8 O -0.589 6.589 9 N -0.610 5.610 10 C 0.305 3.695 11 N -0.567 5.567 12 C 0.028 3.972 13 C 0.223 3.777 14 H 0.011 0.989 15 C -0.153 4.153 16 C -0.514 4.514 17 H 0.042 0.958 18 C 0.019 3.981 19 N -0.915 5.915 20 Si 0.948 3.052 21 H -0.275 1.275 22 H -0.274 1.274 23 H -0.285 1.285 24 C 0.098 3.902 25 H 0.058 0.942 26 H 0.054 0.946 27 H 0.053 0.947 28 H 0.060 0.940 29 H 0.063 0.937 30 H 0.083 0.917 31 H 0.072 0.928 32 H 0.101 0.899 33 H 0.118 0.882 34 H 0.065 0.935 35 H 0.060 0.940 36 H 0.029 0.971 37 H 0.080 0.920 38 H 0.055 0.945 39 H 0.028 0.972 40 H 0.060 0.940 41 H 0.038 0.962 42 H 0.262 0.738 43 H 0.087 0.913 44 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.460 -4.929 5.959 23.754 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.164 4.164 3 C -0.137 4.137 4 C -0.103 4.103 5 H 0.111 0.889 6 C -0.177 4.177 7 C 0.287 3.713 8 O -0.469 6.469 9 N -0.344 5.344 10 C 0.094 3.906 11 N -0.293 5.293 12 C -0.120 4.120 13 C 0.116 3.884 14 H 0.029 0.971 15 C -0.212 4.212 16 C -0.553 4.553 17 H 0.060 0.940 18 C -0.180 4.180 19 N -0.556 5.556 20 Si 0.774 3.226 21 H -0.201 1.201 22 H -0.199 1.199 23 H -0.211 1.211 24 C -0.024 4.024 25 H 0.077 0.923 26 H 0.073 0.927 27 H 0.072 0.928 28 H 0.078 0.922 29 H 0.082 0.918 30 H 0.102 0.898 31 H 0.091 0.909 32 H 0.119 0.881 33 H 0.136 0.864 34 H 0.083 0.917 35 H 0.078 0.922 36 H 0.048 0.952 37 H 0.099 0.901 38 H 0.073 0.927 39 H 0.047 0.953 40 H 0.079 0.921 41 H 0.057 0.943 42 H 0.072 0.928 43 H 0.105 0.895 44 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -21.722 -5.368 5.504 23.043 hybrid contribution 1.068 0.651 -0.867 1.522 sum -20.654 -4.716 4.637 21.687 Atomic orbital electron populations 1.21767 0.95421 1.01741 1.02047 1.21542 0.96126 0.96472 1.02284 1.21572 0.90855 0.97689 1.03564 1.22180 0.97466 0.94826 0.95862 0.88850 1.22438 0.94725 1.00057 1.00447 1.21872 0.87676 0.82110 0.79637 1.90719 1.42921 1.74025 1.39239 1.48629 1.21893 1.26815 1.37089 1.21438 0.84971 0.87259 0.96952 1.61870 1.03900 1.60623 1.02873 1.22457 1.01013 0.99064 0.89494 1.18983 0.85085 0.89406 0.94954 0.97075 1.22187 1.01557 0.99874 0.97623 1.21371 1.04988 1.23942 1.04971 0.93952 1.25506 0.96887 0.95348 1.00241 1.69980 1.14881 1.31529 1.39163 0.85714 0.77581 0.78373 0.80884 1.20069 1.19917 1.21095 1.22520 0.85388 0.98715 0.95732 0.92306 0.92675 0.92803 0.92166 0.91776 0.89829 0.90945 0.88057 0.86372 0.91740 0.92154 0.95228 0.90119 0.92659 0.95320 0.92072 0.94306 0.92837 0.89500 0.89172 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.43 9.91 71.98 0.71 -0.72 16 2 C -0.13 -1.34 5.83 30.60 0.18 -1.16 16 3 C -0.10 -1.04 4.57 30.60 0.14 -0.90 16 4 C -0.08 -1.38 3.12 -9.74 -0.03 -1.41 16 5 H 0.09 1.51 8.14 -2.39 -0.02 1.49 16 6 C -0.14 -3.11 5.89 30.59 0.18 -2.93 16 7 C 0.50 18.49 8.02 87.90 0.71 19.19 16 8 O -0.59 -29.67 17.58 -3.01 -0.05 -29.72 16 9 N -0.61 -20.22 3.12 -829.06 -2.59 -22.81 16 10 C 0.31 12.29 4.22 170.81 0.72 13.01 16 11 N -0.57 -24.94 4.80 -913.86 -4.39 -29.32 16 12 C 0.03 0.93 9.22 127.69 1.18 2.10 16 13 C 0.22 11.69 2.30 44.17 0.10 11.79 16 14 H 0.01 0.65 8.07 -2.39 -0.02 0.64 16 15 C -0.15 -7.35 8.20 71.98 0.59 -6.76 16 16 C -0.51 -30.77 7.63 25.60 0.20 -30.57 16 17 H 0.04 2.75 7.37 -2.91 -0.02 2.73 16 18 C 0.02 1.12 5.30 84.66 0.45 1.57 16 19 N -0.92 -54.24 11.39 21.45 0.24 -54.00 16 20 Si 0.95 48.10 29.54 68.60 2.03 50.13 16 21 H -0.27 -13.54 7.11 99.48 0.71 -12.84 16 22 H -0.27 -13.18 7.11 99.48 0.71 -12.47 16 23 H -0.29 -15.04 7.11 99.48 0.71 -14.33 16 24 C 0.10 1.98 6.71 86.83 0.58 2.56 16 25 H 0.06 0.49 8.14 -2.39 -0.02 0.47 16 26 H 0.05 0.51 8.14 -2.39 -0.02 0.49 16 27 H 0.05 0.50 8.14 -2.39 -0.02 0.48 16 28 H 0.06 0.70 7.74 -2.39 -0.02 0.68 16 29 H 0.06 0.67 8.14 -2.39 -0.02 0.66 16 30 H 0.08 0.68 8.14 -2.39 -0.02 0.66 16 31 H 0.07 0.73 7.93 -2.39 -0.02 0.71 16 32 H 0.10 2.23 8.14 -2.38 -0.02 2.21 16 33 H 0.12 2.21 7.76 -2.39 -0.02 2.19 16 34 H 0.06 2.25 7.64 -2.39 -0.02 2.23 16 35 H 0.06 3.01 6.18 -2.39 -0.01 2.99 16 36 H 0.03 0.93 6.49 -2.39 -0.02 0.92 16 37 H 0.08 2.18 5.68 -2.39 -0.01 2.17 16 38 H 0.05 1.89 8.12 -2.39 -0.02 1.88 16 39 H 0.03 1.34 7.11 -2.39 -0.02 1.32 16 40 H 0.06 3.27 6.26 -2.39 -0.01 3.26 16 41 H 0.04 1.59 6.45 -2.39 -0.02 1.57 16 42 H 0.26 14.76 8.31 -92.70 -0.77 13.99 16 43 H 0.09 1.58 5.99 -2.39 -0.01 1.57 16 44 H 0.09 1.44 7.89 -2.39 -0.02 1.42 16 Total: -1.00 -74.78 340.64 1.90 -72.88 By element: Atomic # 1 Polarization: 6.12 SS G_CDS: 0.96 Total: 7.08 kcal Atomic # 6 Polarization: 0.07 SS G_CDS: 5.70 Total: 5.77 kcal Atomic # 7 Polarization: -99.40 SS G_CDS: -6.73 Total: -106.13 kcal Atomic # 8 Polarization: -29.67 SS G_CDS: -0.05 Total: -29.72 kcal Atomic # 14 Polarization: 48.10 SS G_CDS: 2.03 Total: 50.13 kcal Total: -74.78 1.90 -72.88 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000247362145.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.111 kcal (2) G-P(sol) polarization free energy of solvation -74.779 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.668 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.902 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.877 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.766 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds