Wall clock time and date at job start Mon Mar 30 2020 00:41:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53011 * 109.46948 * 2 1 4 4 C 1.53001 * 109.47005 * 179.97438 * 3 2 1 5 5 H 1.09004 * 110.85605 * 51.21229 * 4 3 2 6 6 C 1.54625 * 111.00184 * 287.39580 * 4 3 2 7 7 C 1.51280 * 104.19800 * 266.66620 * 6 4 3 8 8 O 1.21277 * 124.94399 * 164.01655 * 7 6 4 9 9 N 1.34421 * 110.11317 * 343.74877 * 7 6 4 10 10 C 1.46503 * 124.34803 * 179.57025 * 9 7 6 11 11 N 1.46900 * 109.47225 * 90.02357 * 10 9 7 12 12 C 1.46891 * 110.99925 * 280.37072 * 11 10 9 13 13 C 1.46895 * 110.99674 * 156.41262 * 11 10 9 14 14 H 1.09000 * 109.47357 * 58.97958 * 13 11 10 15 15 C 1.52995 * 109.47767 * 298.97223 * 13 11 10 16 16 C 1.50708 * 109.47043 * 178.97164 * 13 11 10 17 17 H 1.07997 * 119.99538 * 1.95443 * 16 13 11 18 18 C 1.37879 * 120.00141 * 181.94628 * 16 13 11 19 19 N 1.31508 * 119.99796 * 195.69486 * 18 16 13 20 20 Si 1.86800 * 119.99838 * 15.70035 * 18 16 13 21 21 H 1.48496 * 109.47034 * 95.47076 * 20 18 16 22 22 H 1.48497 * 109.46831 * 215.46893 * 20 18 16 23 23 H 1.48496 * 109.47193 * 335.46815 * 20 18 16 24 24 C 1.46756 * 111.30311 * 359.59285 * 9 7 6 25 25 H 1.08995 * 109.47127 * 299.99838 * 1 2 3 26 26 H 1.08997 * 109.46828 * 60.00201 * 1 2 3 27 27 H 1.09001 * 109.46788 * 179.97438 * 1 2 3 28 28 H 1.08997 * 109.47613 * 240.00336 * 2 1 3 29 29 H 1.09005 * 109.47203 * 119.99311 * 2 1 3 30 30 H 1.08997 * 109.46689 * 59.99770 * 3 2 1 31 31 H 1.08998 * 109.46826 * 299.99971 * 3 2 1 32 32 H 1.09002 * 110.48494 * 147.98761 * 6 4 3 33 33 H 1.08997 * 110.48810 * 25.34711 * 6 4 3 34 34 H 1.09006 * 109.47290 * 210.02810 * 10 9 7 35 35 H 1.08998 * 109.47299 * 330.02433 * 10 9 7 36 36 H 1.09000 * 109.47354 * 59.99923 * 12 11 10 37 37 H 1.09007 * 109.47027 * 179.97438 * 12 11 10 38 38 H 1.08995 * 109.47665 * 299.99566 * 12 11 10 39 39 H 1.09003 * 109.46958 * 67.49039 * 15 13 11 40 40 H 1.09000 * 109.47395 * 187.48317 * 15 13 11 41 41 H 1.08998 * 109.47265 * 307.49095 * 15 13 11 42 42 H 0.96998 * 120.00251 * 179.97438 * 19 18 16 43 43 H 1.09004 * 110.24997 * 136.01522 * 24 9 7 44 44 H 1.09001 * 110.24806 * 258.01207 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5700 1.4426 0.0006 5 1 3.9584 0.8044 -0.7931 6 6 4.1236 1.0113 1.3785 7 6 4.3359 2.3141 2.1175 8 8 4.4972 2.4150 3.3152 9 7 4.3255 3.3431 1.2526 10 6 4.4943 4.7469 1.6361 11 7 5.9210 5.0953 1.6034 12 6 6.6063 4.6226 2.8136 13 6 6.1057 6.5416 1.4247 14 1 5.6195 7.0738 2.2424 15 6 5.4860 6.9746 0.0946 16 6 7.5780 6.8635 1.4213 17 1 8.3045 6.0691 1.5083 18 6 7.9975 8.1719 1.3070 19 7 9.2473 8.4369 0.9954 20 14 6.7904 9.5682 1.5949 21 1 6.9023 10.0376 2.9993 22 1 7.1011 10.6893 0.6720 23 1 5.4082 9.0876 1.3422 24 6 4.1228 2.8797 -0.1250 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 1.8934 -0.5138 -0.8900 29 1 1.8934 -0.5137 0.8901 30 1 1.6766 1.9564 0.8900 31 1 1.6766 1.9564 -0.8900 32 1 5.0687 0.4810 1.2608 33 1 3.3987 0.3889 1.9030 34 1 3.9490 5.3824 0.9382 35 1 4.1066 4.8975 2.6436 36 1 6.5127 3.5389 2.8843 37 1 7.6610 4.8933 2.7632 38 1 6.1539 5.0843 3.6912 39 1 4.4027 6.8655 0.1459 40 1 5.7373 8.0170 -0.1012 41 1 5.8765 6.3497 -0.7086 42 1 9.5424 9.3574 0.9146 43 1 3.4016 3.5180 -0.6355 44 1 5.0701 2.8736 -0.6642 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000247363425.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:41:20 Heat of formation + Delta-G solvation = -30.697118 kcal Electronic energy + Delta-G solvation = -21499.317285 eV Core-core repulsion = 18451.689662 eV Total energy + Delta-G solvation = -3047.627623 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.41427 -37.14818 -36.79023 -34.70632 -32.78638 -31.47817 -29.88447 -28.15689 -26.97310 -25.88726 -24.46694 -23.12566 -22.00877 -20.56127 -19.74975 -18.99203 -16.97101 -16.58402 -16.03272 -15.62117 -15.10637 -14.99031 -14.32260 -13.98047 -13.75846 -13.59223 -13.28167 -13.10599 -12.99360 -12.78326 -12.54897 -12.27366 -12.02053 -11.76121 -11.72403 -11.65503 -11.10541 -10.92849 -10.87860 -10.81734 -10.75417 -10.60526 -10.41620 -10.20398 -9.59172 -9.50885 -9.15284 -8.52261 -8.50996 -7.39760 -6.11794 -4.05821 2.83173 3.24673 3.29145 3.34812 3.37276 4.27719 4.38968 4.39502 4.53419 4.77655 4.86851 4.90086 5.04291 5.14775 5.20487 5.34809 5.43708 5.52314 5.53849 5.57167 5.65048 5.73171 5.75904 5.81407 5.81546 5.95829 6.06881 6.12675 6.17354 6.34195 6.43453 6.50252 6.58211 6.76266 6.85523 6.98245 7.24878 7.40443 7.61629 7.91351 8.04049 8.44226 8.63330 8.98876 9.52995 11.00845 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.033422 B = 0.004242 C = 0.004044 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 837.569770 B = 6599.519061 C = 6922.051894 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.125 4.125 3 C -0.112 4.112 4 C -0.101 4.101 5 H 0.095 0.905 6 C -0.151 4.151 7 C 0.515 3.485 8 O -0.538 6.538 9 N -0.600 5.600 10 C 0.280 3.720 11 N -0.541 5.541 12 C 0.042 3.958 13 C 0.190 3.810 14 H -0.006 1.006 15 C -0.139 4.139 16 C -0.512 4.512 17 H 0.082 0.918 18 C 0.076 3.924 19 N -0.890 5.890 20 Si 0.863 3.137 21 H -0.282 1.282 22 H -0.286 1.286 23 H -0.255 1.255 24 C 0.110 3.890 25 H 0.053 0.947 26 H 0.053 0.947 27 H 0.052 0.948 28 H 0.063 0.937 29 H 0.063 0.937 30 H 0.064 0.936 31 H 0.068 0.932 32 H 0.101 0.899 33 H 0.097 0.903 34 H 0.090 0.910 35 H 0.051 0.949 36 H 0.049 0.951 37 H 0.080 0.920 38 H 0.013 0.987 39 H 0.020 0.980 40 H 0.052 0.948 41 H 0.056 0.944 42 H 0.264 0.736 43 H 0.075 0.925 44 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.740 -14.451 -4.596 21.856 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.162 4.162 3 C -0.150 4.150 4 C -0.120 4.120 5 H 0.114 0.886 6 C -0.191 4.191 7 C 0.303 3.697 8 O -0.416 6.416 9 N -0.335 5.335 10 C 0.069 3.931 11 N -0.267 5.267 12 C -0.107 4.107 13 C 0.083 3.917 14 H 0.012 0.988 15 C -0.197 4.197 16 C -0.550 4.550 17 H 0.100 0.900 18 C -0.127 4.127 19 N -0.528 5.528 20 Si 0.690 3.310 21 H -0.209 1.209 22 H -0.212 1.212 23 H -0.180 1.180 24 C -0.013 4.013 25 H 0.072 0.928 26 H 0.072 0.928 27 H 0.071 0.929 28 H 0.081 0.919 29 H 0.081 0.919 30 H 0.082 0.918 31 H 0.087 0.913 32 H 0.120 0.880 33 H 0.115 0.885 34 H 0.108 0.892 35 H 0.069 0.931 36 H 0.068 0.932 37 H 0.099 0.901 38 H 0.031 0.969 39 H 0.039 0.961 40 H 0.070 0.930 41 H 0.075 0.925 42 H 0.074 0.926 43 H 0.094 0.906 44 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -15.299 -14.376 -4.389 21.447 hybrid contribution -0.748 1.347 0.735 1.707 sum -16.047 -13.029 -3.654 20.991 Atomic orbital electron populations 1.21775 0.95960 1.01496 1.01844 1.21556 0.95777 0.96764 1.02151 1.21651 0.93634 0.97076 1.02591 1.22227 0.95959 0.96415 0.97412 0.88632 1.22443 1.03583 0.96806 0.96313 1.20826 0.75617 0.86646 0.86654 1.90706 1.50468 1.86296 1.14100 1.48387 1.70292 1.07035 1.07752 1.21906 0.91826 0.80046 0.99325 1.61753 1.08862 1.17764 1.38364 1.22249 1.00730 0.98393 0.89279 1.19561 0.97651 0.82083 0.92436 0.98820 1.22240 0.96351 1.01014 1.00080 1.20897 0.89450 0.93727 1.50936 0.90046 1.24871 0.95017 0.98485 0.94307 1.69967 1.16677 1.19722 1.46405 0.87225 0.83033 0.82419 0.78304 1.20860 1.21216 1.17965 1.22111 1.01194 0.94133 0.83896 0.92777 0.92766 0.92873 0.91859 0.91856 0.91764 0.91286 0.88039 0.88464 0.89240 0.93119 0.93204 0.90098 0.96853 0.96083 0.92957 0.92496 0.92647 0.90619 0.90558 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.00 9.91 37.16 0.37 -0.63 16 2 C -0.13 -0.84 5.82 -26.72 -0.16 -1.00 16 3 C -0.11 -0.87 4.60 -26.72 -0.12 -1.00 16 4 C -0.10 -0.87 3.12 -88.99 -0.28 -1.15 16 5 H 0.10 0.66 8.14 -51.93 -0.42 0.23 16 6 C -0.15 -1.63 6.28 -26.74 -0.17 -1.79 16 7 C 0.52 8.15 7.24 -10.86 -0.08 8.07 16 8 O -0.54 -10.69 16.25 5.56 0.09 -10.60 16 9 N -0.60 -9.15 3.13 -175.91 -0.55 -9.70 16 10 C 0.28 5.00 5.60 -63.31 -0.35 4.65 16 11 N -0.54 -11.52 4.72 -240.20 -1.13 -12.66 16 12 C 0.04 0.91 8.96 60.06 0.54 1.44 16 13 C 0.19 4.48 1.61 -68.87 -0.11 4.37 16 14 H -0.01 -0.14 6.92 -51.93 -0.36 -0.50 16 15 C -0.14 -2.95 8.04 37.16 0.30 -2.65 16 16 C -0.51 -14.22 8.30 -34.44 -0.29 -14.51 16 17 H 0.08 2.48 6.66 -52.49 -0.35 2.13 16 18 C 0.08 2.15 5.31 -17.82 -0.09 2.05 16 19 N -0.89 -26.86 13.96 55.43 0.77 -26.08 16 20 Si 0.86 20.96 25.68 -169.99 -4.37 16.59 16 21 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 22 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 23 H -0.26 -5.79 5.45 56.52 0.31 -5.49 16 24 C 0.11 1.25 6.90 -3.12 -0.02 1.23 16 25 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 26 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 27 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 28 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 29 H 0.06 0.44 6.91 -51.93 -0.36 0.08 16 30 H 0.06 0.60 8.12 -51.93 -0.42 0.18 16 31 H 0.07 0.49 8.10 -51.93 -0.42 0.07 16 32 H 0.10 1.01 8.14 -51.93 -0.42 0.59 16 33 H 0.10 0.94 6.69 -51.93 -0.35 0.59 16 34 H 0.09 1.47 5.67 -51.93 -0.29 1.17 16 35 H 0.05 0.96 7.68 -51.93 -0.40 0.56 16 36 H 0.05 1.05 6.09 -51.93 -0.32 0.74 16 37 H 0.08 1.90 6.08 -51.93 -0.32 1.58 16 38 H 0.01 0.28 8.07 -51.93 -0.42 -0.13 16 39 H 0.02 0.37 6.38 -51.93 -0.33 0.04 16 40 H 0.05 1.16 4.73 -51.93 -0.25 0.91 16 41 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 42 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 43 H 0.08 0.76 7.88 -51.93 -0.41 0.35 16 44 H 0.08 0.92 8.14 -51.93 -0.42 0.49 16 LS Contribution 334.51 15.07 5.04 5.04 Total: -1.00 -31.93 334.51 -8.21 -40.14 By element: Atomic # 1 Polarization: 5.79 SS G_CDS: -7.60 Total: -1.80 kcal Atomic # 6 Polarization: -0.46 SS G_CDS: -0.46 Total: -0.92 kcal Atomic # 7 Polarization: -47.53 SS G_CDS: -0.91 Total: -48.44 kcal Atomic # 8 Polarization: -10.69 SS G_CDS: 0.09 Total: -10.60 kcal Atomic # 14 Polarization: 20.96 SS G_CDS: -4.37 Total: 16.59 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -31.93 -8.21 -40.14 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000247363425.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.439 kcal (2) G-P(sol) polarization free energy of solvation -31.927 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.488 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.209 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.136 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.697 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds