Wall clock time and date at job start Mon Mar 30 2020 00:41:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53011 * 109.46948 * 2 1 4 4 C 1.53001 * 109.47005 * 179.97438 * 3 2 1 5 5 H 1.09004 * 110.85605 * 51.21229 * 4 3 2 6 6 C 1.54625 * 111.00184 * 287.39580 * 4 3 2 7 7 C 1.51280 * 104.19800 * 266.66620 * 6 4 3 8 8 O 1.21277 * 124.94399 * 164.01655 * 7 6 4 9 9 N 1.34421 * 110.11317 * 343.74877 * 7 6 4 10 10 C 1.46503 * 124.34803 * 179.57025 * 9 7 6 11 11 N 1.46900 * 109.47225 * 90.02357 * 10 9 7 12 12 C 1.46891 * 110.99925 * 280.37072 * 11 10 9 13 13 C 1.46895 * 110.99674 * 156.41262 * 11 10 9 14 14 H 1.09000 * 109.47357 * 58.97958 * 13 11 10 15 15 C 1.52995 * 109.47767 * 298.97223 * 13 11 10 16 16 C 1.50708 * 109.47043 * 178.97164 * 13 11 10 17 17 H 1.07997 * 119.99538 * 1.95443 * 16 13 11 18 18 C 1.37879 * 120.00141 * 181.94628 * 16 13 11 19 19 N 1.31508 * 119.99796 * 195.69486 * 18 16 13 20 20 Si 1.86800 * 119.99838 * 15.70035 * 18 16 13 21 21 H 1.48496 * 109.47034 * 95.47076 * 20 18 16 22 22 H 1.48497 * 109.46831 * 215.46893 * 20 18 16 23 23 H 1.48496 * 109.47193 * 335.46815 * 20 18 16 24 24 C 1.46756 * 111.30311 * 359.59285 * 9 7 6 25 25 H 1.08995 * 109.47127 * 299.99838 * 1 2 3 26 26 H 1.08997 * 109.46828 * 60.00201 * 1 2 3 27 27 H 1.09001 * 109.46788 * 179.97438 * 1 2 3 28 28 H 1.08997 * 109.47613 * 240.00336 * 2 1 3 29 29 H 1.09005 * 109.47203 * 119.99311 * 2 1 3 30 30 H 1.08997 * 109.46689 * 59.99770 * 3 2 1 31 31 H 1.08998 * 109.46826 * 299.99971 * 3 2 1 32 32 H 1.09002 * 110.48494 * 147.98761 * 6 4 3 33 33 H 1.08997 * 110.48810 * 25.34711 * 6 4 3 34 34 H 1.09006 * 109.47290 * 210.02810 * 10 9 7 35 35 H 1.08998 * 109.47299 * 330.02433 * 10 9 7 36 36 H 1.09000 * 109.47354 * 59.99923 * 12 11 10 37 37 H 1.09007 * 109.47027 * 179.97438 * 12 11 10 38 38 H 1.08995 * 109.47665 * 299.99566 * 12 11 10 39 39 H 1.09003 * 109.46958 * 67.49039 * 15 13 11 40 40 H 1.09000 * 109.47395 * 187.48317 * 15 13 11 41 41 H 1.08998 * 109.47265 * 307.49095 * 15 13 11 42 42 H 0.96998 * 120.00251 * 179.97438 * 19 18 16 43 43 H 1.09004 * 110.24997 * 136.01522 * 24 9 7 44 44 H 1.09001 * 110.24806 * 258.01207 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5700 1.4426 0.0006 5 1 3.9584 0.8044 -0.7931 6 6 4.1236 1.0113 1.3785 7 6 4.3359 2.3141 2.1175 8 8 4.4972 2.4150 3.3152 9 7 4.3255 3.3431 1.2526 10 6 4.4943 4.7469 1.6361 11 7 5.9210 5.0953 1.6034 12 6 6.6063 4.6226 2.8136 13 6 6.1057 6.5416 1.4247 14 1 5.6195 7.0738 2.2424 15 6 5.4860 6.9746 0.0946 16 6 7.5780 6.8635 1.4213 17 1 8.3045 6.0691 1.5083 18 6 7.9975 8.1719 1.3070 19 7 9.2473 8.4369 0.9954 20 14 6.7904 9.5682 1.5949 21 1 6.9023 10.0376 2.9993 22 1 7.1011 10.6893 0.6720 23 1 5.4082 9.0876 1.3422 24 6 4.1228 2.8797 -0.1250 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 1.8934 -0.5138 -0.8900 29 1 1.8934 -0.5137 0.8901 30 1 1.6766 1.9564 0.8900 31 1 1.6766 1.9564 -0.8900 32 1 5.0687 0.4810 1.2608 33 1 3.3987 0.3889 1.9030 34 1 3.9490 5.3824 0.9382 35 1 4.1066 4.8975 2.6436 36 1 6.5127 3.5389 2.8843 37 1 7.6610 4.8933 2.7632 38 1 6.1539 5.0843 3.6912 39 1 4.4027 6.8655 0.1459 40 1 5.7373 8.0170 -0.1012 41 1 5.8765 6.3497 -0.7086 42 1 9.5424 9.3574 0.9146 43 1 3.4016 3.5180 -0.6355 44 1 5.0701 2.8736 -0.6642 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000247363425.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:41:20 Heat of formation + Delta-G solvation = -52.343148 kcal Electronic energy + Delta-G solvation = -21500.255927 eV Core-core repulsion = 18451.689662 eV Total energy + Delta-G solvation = -3048.566265 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.54346 -38.77219 -37.91055 -35.70685 -34.62646 -32.72233 -31.58100 -29.11962 -28.38369 -26.99617 -26.23650 -24.73921 -22.63446 -21.55137 -21.28623 -20.29392 -18.90708 -17.82537 -17.28757 -16.94593 -16.46325 -16.12791 -15.83162 -15.29999 -15.00939 -14.82690 -14.57398 -14.39012 -14.17746 -14.07202 -13.86688 -13.66839 -13.48485 -12.87275 -12.78742 -12.66089 -12.56919 -12.34795 -12.26531 -12.19076 -12.11231 -11.64421 -11.48633 -11.40621 -11.30582 -11.14747 -10.75598 -10.66540 -9.81844 -9.12533 -8.30382 -6.29419 1.32571 1.38346 1.46741 1.60413 2.10148 2.34119 3.01857 3.26938 3.46464 3.51735 3.84989 4.00567 4.13202 4.28750 4.32146 4.38569 4.45059 4.52656 4.55865 4.68201 4.72511 4.73903 4.77389 4.80259 4.82184 4.86587 4.99965 5.07062 5.07976 5.12575 5.14972 5.24354 5.36439 5.38673 5.50256 5.56495 5.57567 5.70707 5.98605 6.13008 6.34255 6.62657 6.74641 7.21986 7.33540 8.86179 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.033422 B = 0.004242 C = 0.004044 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 837.569770 B = 6599.519061 C = 6922.051894 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.123 4.123 3 C -0.108 4.108 4 C -0.084 4.084 5 H 0.125 0.875 6 C -0.142 4.142 7 C 0.501 3.499 8 O -0.588 6.588 9 N -0.603 5.603 10 C 0.283 3.717 11 N -0.547 5.547 12 C 0.056 3.944 13 C 0.192 3.808 14 H -0.010 1.010 15 C -0.133 4.133 16 C -0.517 4.517 17 H 0.036 0.964 18 C 0.020 3.980 19 N -0.940 5.940 20 Si 0.928 3.072 21 H -0.285 1.285 22 H -0.281 1.281 23 H -0.224 1.224 24 C 0.103 3.897 25 H 0.045 0.955 26 H 0.058 0.942 27 H 0.058 0.942 28 H 0.076 0.924 29 H 0.060 0.940 30 H 0.046 0.954 31 H 0.081 0.919 32 H 0.113 0.887 33 H 0.110 0.890 34 H 0.112 0.888 35 H 0.037 0.963 36 H 0.053 0.947 37 H 0.053 0.947 38 H 0.007 0.993 39 H 0.060 0.940 40 H 0.044 0.956 41 H 0.055 0.945 42 H 0.266 0.734 43 H 0.095 0.905 44 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.607 -15.106 -6.313 24.785 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.161 4.161 3 C -0.146 4.146 4 C -0.103 4.103 5 H 0.143 0.857 6 C -0.182 4.182 7 C 0.290 3.710 8 O -0.469 6.469 9 N -0.336 5.336 10 C 0.071 3.929 11 N -0.273 5.273 12 C -0.092 4.092 13 C 0.084 3.916 14 H 0.008 0.992 15 C -0.191 4.191 16 C -0.555 4.555 17 H 0.055 0.945 18 C -0.178 4.178 19 N -0.580 5.580 20 Si 0.752 3.248 21 H -0.212 1.212 22 H -0.207 1.207 23 H -0.147 1.147 24 C -0.019 4.019 25 H 0.064 0.936 26 H 0.077 0.923 27 H 0.077 0.923 28 H 0.095 0.905 29 H 0.079 0.921 30 H 0.064 0.936 31 H 0.100 0.900 32 H 0.131 0.869 33 H 0.128 0.872 34 H 0.130 0.870 35 H 0.055 0.945 36 H 0.072 0.928 37 H 0.072 0.928 38 H 0.025 0.975 39 H 0.079 0.921 40 H 0.063 0.937 41 H 0.074 0.926 42 H 0.075 0.925 43 H 0.113 0.887 44 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -18.202 -15.067 -6.146 24.415 hybrid contribution 0.198 1.446 1.282 1.943 sum -18.004 -13.621 -4.864 23.094 Atomic orbital electron populations 1.21783 0.95959 1.01823 1.01645 1.21546 0.95782 0.96050 1.02681 1.21628 0.92806 0.97786 1.02342 1.22245 0.96451 0.94830 0.96753 0.85709 1.22469 1.04719 0.94081 0.96939 1.21772 0.74437 0.88489 0.86272 1.90670 1.52601 1.87269 1.16406 1.48499 1.69578 1.05947 1.09610 1.21857 0.89452 0.82146 0.99436 1.61744 1.11311 1.16506 1.37780 1.22024 0.99144 0.98449 0.89630 1.19454 0.94837 0.83467 0.93855 0.99216 1.22106 0.98666 1.00290 0.97999 1.21112 0.91295 0.92830 1.50308 0.94529 1.25717 0.96854 1.01308 0.93910 1.70104 1.19137 1.20476 1.48274 0.86183 0.82086 0.78739 0.77836 1.21194 1.20670 1.14663 1.22402 1.01751 0.96157 0.81573 0.93632 0.92335 0.92338 0.90510 0.92128 0.93562 0.90013 0.86889 0.87204 0.87030 0.94509 0.92839 0.92820 0.97474 0.92125 0.93715 0.92603 0.92492 0.88696 0.91027 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.63 9.91 71.98 0.71 -0.92 16 2 C -0.12 -1.26 5.82 30.60 0.18 -1.08 16 3 C -0.11 -1.32 4.60 30.60 0.14 -1.17 16 4 C -0.08 -1.15 3.12 -9.74 -0.03 -1.18 16 5 H 0.12 1.10 8.14 -2.39 -0.02 1.08 16 6 C -0.14 -2.72 6.28 30.59 0.19 -2.53 16 7 C 0.50 15.40 7.24 87.90 0.64 16.03 16 8 O -0.59 -23.64 16.25 -3.02 -0.05 -23.69 16 9 N -0.60 -17.41 3.13 -829.04 -2.60 -20.01 16 10 C 0.28 9.68 5.60 170.81 0.96 10.63 16 11 N -0.55 -23.17 4.72 -913.86 -4.32 -27.48 16 12 C 0.06 2.53 8.96 127.69 1.14 3.67 16 13 C 0.19 8.89 1.61 44.17 0.07 8.96 16 14 H -0.01 -0.45 6.92 -2.39 -0.02 -0.47 16 15 C -0.13 -5.26 8.04 71.98 0.58 -4.68 16 16 C -0.52 -29.45 8.30 25.60 0.21 -29.24 16 17 H 0.04 2.36 6.66 -2.91 -0.02 2.34 16 18 C 0.02 1.17 5.31 84.66 0.45 1.62 16 19 N -0.94 -58.36 13.96 21.45 0.30 -58.06 16 20 Si 0.93 42.87 25.68 68.60 1.76 44.63 16 21 H -0.29 -13.28 7.11 99.48 0.71 -12.57 16 22 H -0.28 -12.70 7.11 99.48 0.71 -12.00 16 23 H -0.22 -9.16 5.45 99.48 0.54 -8.62 16 24 C 0.10 2.02 6.90 86.83 0.60 2.62 16 25 H 0.04 0.55 8.14 -2.39 -0.02 0.53 16 26 H 0.06 0.56 8.14 -2.39 -0.02 0.54 16 27 H 0.06 0.55 8.14 -2.39 -0.02 0.53 16 28 H 0.08 0.61 8.14 -2.39 -0.02 0.59 16 29 H 0.06 0.66 6.91 -2.38 -0.02 0.64 16 30 H 0.05 0.75 8.12 -2.39 -0.02 0.73 16 31 H 0.08 0.82 8.10 -2.39 -0.02 0.81 16 32 H 0.11 1.95 8.14 -2.39 -0.02 1.93 16 33 H 0.11 1.86 6.69 -2.39 -0.02 1.84 16 34 H 0.11 3.29 5.67 -2.38 -0.01 3.27 16 35 H 0.04 1.38 7.68 -2.39 -0.02 1.36 16 36 H 0.05 2.34 6.09 -2.39 -0.01 2.32 16 37 H 0.05 2.67 6.08 -2.38 -0.01 2.66 16 38 H 0.01 0.31 8.07 -2.39 -0.02 0.29 16 39 H 0.06 1.91 6.38 -2.39 -0.02 1.90 16 40 H 0.04 1.83 4.73 -2.39 -0.01 1.82 16 41 H 0.05 2.21 8.14 -2.39 -0.02 2.19 16 42 H 0.27 15.43 8.31 -92.71 -0.77 14.65 16 43 H 0.09 1.52 7.88 -2.39 -0.02 1.50 16 44 H 0.07 1.51 8.14 -2.39 -0.02 1.49 16 Total: -1.00 -72.26 334.51 1.74 -70.52 By element: Atomic # 1 Polarization: 10.56 SS G_CDS: 0.80 Total: 11.36 kcal Atomic # 6 Polarization: -3.11 SS G_CDS: 5.84 Total: 2.73 kcal Atomic # 7 Polarization: -98.94 SS G_CDS: -6.61 Total: -105.55 kcal Atomic # 8 Polarization: -23.64 SS G_CDS: -0.05 Total: -23.69 kcal Atomic # 14 Polarization: 42.87 SS G_CDS: 1.76 Total: 44.63 kcal Total: -72.26 1.74 -70.52 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000247363425.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.174 kcal (2) G-P(sol) polarization free energy of solvation -72.257 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.083 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.740 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.517 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.343 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds