Wall clock time and date at job start Mon Mar 30 2020 01:13:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52994 * 109.47173 * 2 1 4 4 C 1.50699 * 109.46874 * 239.99285 * 2 1 3 5 5 H 1.08001 * 119.99981 * 239.99875 * 4 2 1 6 6 C 1.37876 * 119.99570 * 60.00616 * 4 2 1 7 7 N 1.31514 * 120.00351 * 359.97438 * 6 4 2 8 8 Si 1.86803 * 119.99771 * 179.97438 * 6 4 2 9 9 H 1.48504 * 109.47118 * 60.00127 * 8 6 4 10 10 H 1.48504 * 109.47036 * 179.97438 * 8 6 4 11 11 H 1.48493 * 109.47374 * 300.00233 * 8 6 4 12 12 C 1.53004 * 109.46866 * 119.99936 * 2 1 3 13 13 N 1.46504 * 109.46928 * 299.99525 * 12 2 1 14 14 C 1.34777 * 119.99854 * 179.97438 * 13 12 2 15 15 O 1.21593 * 119.99953 * 0.02562 * 14 13 12 16 16 N 1.34773 * 120.00097 * 180.27545 * 14 13 12 17 17 C 1.44584 * 118.64366 * 359.46699 * 16 14 13 18 18 C 1.54313 * 109.90409 * 270.85312 * 17 16 14 19 19 C 1.47097 * 110.29264 * 288.75681 * 18 17 16 20 20 C 1.52567 * 114.32925 * 62.73084 * 19 18 17 21 21 C 1.50871 * 109.35561 * 274.98263 * 20 19 18 22 22 C 1.47602 * 118.64537 * 179.72459 * 16 14 13 23 23 H 1.09007 * 109.47177 * 300.00073 * 1 2 3 24 24 H 1.08994 * 109.47297 * 60.00189 * 1 2 3 25 25 H 1.08997 * 109.47361 * 180.02562 * 1 2 3 26 26 H 1.09006 * 109.47135 * 179.97438 * 3 2 1 27 27 H 1.09001 * 109.47144 * 299.99487 * 3 2 1 28 28 H 1.08998 * 109.47717 * 59.99943 * 3 2 1 29 29 H 0.96996 * 120.00389 * 180.02562 * 7 6 4 30 30 H 1.08998 * 109.47202 * 179.97438 * 12 2 1 31 31 H 1.08997 * 109.47419 * 59.99682 * 12 2 1 32 32 H 0.97000 * 120.00410 * 0.02562 * 13 12 2 33 33 H 1.08996 * 109.44629 * 30.75693 * 17 16 14 34 34 H 1.09000 * 109.45033 * 150.67967 * 17 16 14 35 35 H 1.08997 * 109.40315 * 168.47079 * 18 17 16 36 36 H 1.09002 * 109.28540 * 48.96936 * 18 17 16 37 37 H 1.09005 * 108.51227 * 301.47645 * 19 18 17 38 38 H 1.08999 * 108.51399 * 183.99361 * 19 18 17 39 39 H 1.08996 * 109.48684 * 155.01476 * 20 19 18 40 40 H 1.08996 * 109.48642 * 34.95183 * 20 19 18 41 41 H 1.09002 * 109.37006 * 331.69254 * 21 20 19 42 42 H 1.09007 * 109.36955 * 212.07710 * 21 20 19 43 43 H 1.08998 * 108.95359 * 258.55313 * 22 16 14 44 44 H 1.09005 * 108.95048 * 17.27751 * 22 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0323 -0.7106 -1.2304 5 1 2.6532 -1.5887 -1.1312 6 6 1.6992 -0.2395 -2.4826 7 7 0.9428 0.8295 -2.6034 8 14 2.3224 -1.1199 -4.0078 9 1 1.8277 -2.5201 -4.0080 10 1 1.8268 -0.4202 -5.2204 11 1 3.8073 -1.1195 -4.0076 12 6 2.0400 -0.7213 1.2493 13 7 1.5517 -0.0305 2.4454 14 6 1.8768 -0.4913 3.6696 15 8 2.5757 -1.4799 3.7812 16 7 1.4230 0.1409 4.7700 17 6 0.5992 1.3173 4.6033 18 6 1.4890 2.5761 4.5323 19 6 2.0660 2.8681 5.8535 20 6 2.9906 1.7796 6.3901 21 6 2.1683 0.7236 7.0866 22 6 1.7923 -0.3929 6.0956 23 1 -0.3634 0.5139 0.8900 24 1 -0.3633 0.5138 -0.8899 25 1 -0.3634 -1.0276 0.0005 26 1 3.1301 1.4424 0.0005 27 1 1.6768 1.9563 -0.8900 28 1 1.6767 1.9564 0.8899 29 1 0.7082 1.1607 -3.4844 30 1 3.1299 -0.7217 1.2491 31 1 1.6766 -1.7489 1.2494 32 1 0.9937 0.7580 2.3564 33 1 0.0261 1.2312 3.6801 34 1 -0.0845 1.4043 5.4477 35 1 0.8895 3.4254 4.2048 36 1 2.2937 2.4082 3.8164 37 1 1.2510 3.0108 6.5632 38 1 2.6292 3.7989 5.7872 39 1 3.6952 2.2171 7.0974 40 1 3.5383 1.3275 5.5633 41 1 1.2594 1.1763 7.4829 42 1 2.7460 0.2988 7.9076 43 1 0.9495 -0.9546 6.4984 44 1 2.6432 -1.0649 5.9821 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000315846231.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:13:39 Heat of formation + Delta-G solvation = -57.314805 kcal Electronic energy + Delta-G solvation = -22015.959354 eV Core-core repulsion = 18967.177502 eV Total energy + Delta-G solvation = -3048.781853 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.59701 -38.97536 -37.98199 -35.28919 -34.59474 -33.52101 -32.38344 -28.06935 -27.57150 -27.39684 -26.60454 -25.94432 -22.89105 -21.38044 -20.62884 -20.47853 -19.07717 -17.84338 -17.47777 -16.85588 -16.61988 -15.84763 -15.74986 -15.47155 -15.04545 -14.78583 -14.67949 -14.27328 -14.08177 -13.90485 -13.53293 -13.25034 -13.08320 -13.06029 -12.66913 -12.61672 -12.51861 -12.24884 -12.12153 -11.81787 -11.61996 -11.50923 -11.48455 -11.30528 -11.24255 -11.02579 -10.71316 -10.39018 -10.07180 -9.38863 -8.01351 -6.16966 1.45094 1.45859 1.52653 1.77628 2.19201 2.46830 3.10250 3.22122 3.77205 3.93113 4.04461 4.06717 4.22405 4.38068 4.43170 4.52311 4.58725 4.69596 4.70743 4.75721 4.87891 4.94025 5.01714 5.04717 5.05528 5.10861 5.19215 5.25012 5.28693 5.30353 5.38336 5.39659 5.51258 5.62577 5.66847 5.67495 5.76192 5.99679 6.14532 6.21477 6.44188 6.86291 7.07123 7.50444 7.62614 8.97595 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.035061 B = 0.004526 C = 0.004291 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 798.421400 B = 6185.254003 C = 6523.327103 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C 0.052 3.948 3 C -0.117 4.117 4 C -0.530 4.530 5 H 0.043 0.957 6 C 0.030 3.970 7 N -0.898 5.898 8 Si 0.945 3.055 9 H -0.277 1.277 10 H -0.281 1.281 11 H -0.278 1.278 12 C 0.167 3.833 13 N -0.726 5.726 14 C 0.690 3.310 15 O -0.645 6.645 16 N -0.616 5.616 17 C 0.106 3.894 18 C -0.140 4.140 19 C -0.113 4.113 20 C -0.118 4.118 21 C -0.119 4.119 22 C 0.124 3.876 23 H 0.033 0.967 24 H 0.064 0.936 25 H 0.017 0.983 26 H 0.015 0.985 27 H 0.064 0.936 28 H 0.033 0.967 29 H 0.261 0.739 30 H 0.031 0.969 31 H 0.033 0.967 32 H 0.404 0.596 33 H 0.070 0.930 34 H 0.109 0.891 35 H 0.094 0.906 36 H 0.038 0.962 37 H 0.081 0.919 38 H 0.060 0.940 39 H 0.073 0.927 40 H 0.031 0.969 41 H 0.088 0.912 42 H 0.088 0.912 43 H 0.071 0.929 44 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.600 6.576 18.106 19.438 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.052 3.948 3 C -0.174 4.174 4 C -0.568 4.568 5 H 0.061 0.939 6 C -0.170 4.170 7 N -0.537 5.537 8 Si 0.772 3.228 9 H -0.203 1.203 10 H -0.207 1.207 11 H -0.203 1.203 12 C 0.042 3.958 13 N -0.383 5.383 14 C 0.391 3.609 15 O -0.527 6.527 16 N -0.352 5.352 17 C -0.017 4.017 18 C -0.179 4.179 19 C -0.150 4.150 20 C -0.156 4.156 21 C -0.157 4.157 22 C 0.002 3.998 23 H 0.052 0.948 24 H 0.083 0.917 25 H 0.036 0.964 26 H 0.035 0.965 27 H 0.083 0.917 28 H 0.052 0.948 29 H 0.070 0.930 30 H 0.050 0.950 31 H 0.051 0.949 32 H 0.243 0.757 33 H 0.088 0.912 34 H 0.127 0.873 35 H 0.112 0.888 36 H 0.057 0.943 37 H 0.099 0.901 38 H 0.079 0.921 39 H 0.092 0.908 40 H 0.050 0.950 41 H 0.106 0.894 42 H 0.106 0.894 43 H 0.089 0.911 44 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -2.212 6.005 18.056 19.156 hybrid contribution 0.373 -0.385 -1.367 1.468 sum -1.839 5.620 16.689 17.706 Atomic orbital electron populations 1.21643 0.97038 0.98605 1.00244 1.18353 0.93308 0.93036 0.90138 1.21634 0.97763 0.97815 1.00228 1.21219 1.31857 1.12208 0.91553 0.93861 1.25432 0.95097 0.95585 1.00868 1.69890 1.36864 1.23229 1.23688 0.85818 0.78591 0.78818 0.79574 1.20303 1.20665 1.20342 1.21117 0.96497 0.94669 0.83518 1.45397 1.55708 1.33240 1.03954 1.16317 0.80120 0.82768 0.81702 1.90823 1.45325 1.30042 1.86558 1.46947 1.53846 1.29847 1.04545 1.21627 0.92872 0.83655 1.03547 1.21238 0.99750 0.98393 0.98470 1.20413 0.99557 0.98272 0.96792 1.21069 0.98385 0.96640 0.99501 1.21757 1.01332 0.95565 0.97085 1.21809 1.00666 0.96617 0.80714 0.94790 0.91688 0.96374 0.96535 0.91705 0.94785 0.92971 0.95018 0.94861 0.75721 0.91214 0.87333 0.88790 0.94299 0.90089 0.92138 0.90791 0.94980 0.89377 0.89379 0.91079 0.92146 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.31 8.08 71.98 0.58 -4.73 16 2 C 0.05 2.49 0.50 -52.93 -0.03 2.46 16 3 C -0.12 -5.29 8.08 71.98 0.58 -4.71 16 4 C -0.53 -28.56 8.01 25.60 0.21 -28.36 16 5 H 0.04 2.39 7.74 -2.91 -0.02 2.37 16 6 C 0.03 1.60 5.15 84.65 0.44 2.03 16 7 N -0.90 -48.00 9.35 21.45 0.20 -47.80 16 8 Si 0.95 42.97 29.54 68.60 2.03 45.00 16 9 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16 10 H -0.28 -12.42 7.11 99.48 0.71 -11.71 16 11 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 12 C 0.17 7.53 4.50 86.38 0.39 7.92 16 13 N -0.73 -27.24 4.79 -478.52 -2.29 -29.54 16 14 C 0.69 25.96 8.22 179.06 1.47 27.44 16 15 O -0.64 -29.85 15.62 -4.01 -0.06 -29.91 16 16 N -0.62 -16.72 2.25 -837.28 -1.88 -18.61 16 17 C 0.11 2.12 5.10 87.18 0.44 2.56 16 18 C -0.14 -2.62 5.72 29.20 0.17 -2.45 16 19 C -0.11 -1.76 5.15 28.62 0.15 -1.61 16 20 C -0.12 -2.14 5.51 29.76 0.16 -1.97 16 21 C -0.12 -1.84 5.71 30.22 0.17 -1.67 16 22 C 0.12 2.85 6.11 86.49 0.53 3.38 16 23 H 0.03 1.29 6.86 -2.38 -0.02 1.27 16 24 H 0.06 3.23 6.07 -2.39 -0.01 3.22 16 25 H 0.02 0.80 8.14 -2.39 -0.02 0.78 16 26 H 0.02 0.73 8.14 -2.38 -0.02 0.71 16 27 H 0.06 3.23 6.07 -2.39 -0.01 3.22 16 28 H 0.03 1.30 6.86 -2.39 -0.02 1.28 16 29 H 0.26 13.43 8.31 -92.71 -0.77 12.66 16 30 H 0.03 1.53 8.14 -2.39 -0.02 1.52 16 31 H 0.03 1.60 8.14 -2.39 -0.02 1.58 16 32 H 0.40 13.32 3.77 -92.71 -0.35 12.97 16 33 H 0.07 1.47 6.21 -2.39 -0.01 1.45 16 34 H 0.11 1.53 8.06 -2.39 -0.02 1.51 16 35 H 0.09 1.41 8.14 -2.39 -0.02 1.39 16 36 H 0.04 0.97 8.14 -2.39 -0.02 0.95 16 37 H 0.08 0.92 7.36 -2.38 -0.02 0.91 16 38 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 39 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 40 H 0.03 0.81 7.48 -2.39 -0.02 0.80 16 41 H 0.09 0.99 7.32 -2.39 -0.02 0.97 16 42 H 0.09 1.12 8.14 -2.38 -0.02 1.11 16 43 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 44 H 0.06 1.75 6.95 -2.38 -0.02 1.73 16 Total: -1.00 -64.07 329.20 3.87 -60.21 By element: Atomic # 1 Polarization: 19.74 SS G_CDS: 0.62 Total: 20.36 kcal Atomic # 6 Polarization: -4.97 SS G_CDS: 5.26 Total: 0.29 kcal Atomic # 7 Polarization: -91.96 SS G_CDS: -3.98 Total: -95.94 kcal Atomic # 8 Polarization: -29.85 SS G_CDS: -0.06 Total: -29.91 kcal Atomic # 14 Polarization: 42.97 SS G_CDS: 2.03 Total: 45.00 kcal Total: -64.07 3.87 -60.21 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000315846231.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.891 kcal (2) G-P(sol) polarization free energy of solvation -64.072 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.181 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.866 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.206 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.315 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds