Wall clock time and date at job start Mon Mar 30 2020 00:42:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53001 * 109.47242 * 2 1 4 4 C 1.52996 * 109.47218 * 174.93824 * 3 2 1 5 5 H 1.09001 * 109.46964 * 303.25571 * 4 3 2 6 6 N 1.46895 * 109.47277 * 63.25946 * 4 3 2 7 7 C 1.46907 * 111.00069 * 62.40816 * 6 4 3 8 8 C 1.50698 * 109.46825 * 176.79783 * 7 6 4 9 9 O 1.21276 * 120.00375 * 0.02562 * 8 7 6 10 10 N 1.34780 * 119.99844 * 179.97438 * 8 7 6 11 11 C 1.46499 * 120.00353 * 180.02562 * 10 8 7 12 12 C 1.50699 * 109.46963 * 180.02562 * 11 10 8 13 13 H 1.07992 * 120.00450 * 0.02562 * 12 11 10 14 14 C 1.37881 * 119.99456 * 179.97438 * 12 11 10 15 15 N 1.31514 * 119.99760 * 179.97438 * 14 12 11 16 16 Si 1.86803 * 120.00393 * 359.97438 * 14 12 11 17 17 H 1.48504 * 109.46928 * 89.99685 * 16 14 12 18 18 H 1.48491 * 109.47062 * 210.00136 * 16 14 12 19 19 H 1.48498 * 109.46738 * 330.00067 * 16 14 12 20 20 C 1.53005 * 109.47018 * 183.25711 * 4 3 2 21 21 C 1.53780 * 113.61378 * 179.97438 * 20 4 3 22 22 C 1.53780 * 87.08503 * 220.02239 * 21 20 4 23 23 C 1.53784 * 87.17256 * 25.39192 * 22 21 20 24 24 H 1.09003 * 109.47276 * 179.97438 * 1 2 3 25 25 H 1.09000 * 109.47075 * 300.00230 * 1 2 3 26 26 H 1.09000 * 109.46885 * 59.99867 * 1 2 3 27 27 H 1.09000 * 109.46816 * 240.00509 * 2 1 3 28 28 H 1.08999 * 109.47381 * 120.00301 * 2 1 3 29 29 H 1.09004 * 109.47105 * 54.93430 * 3 2 1 30 30 H 1.09002 * 109.47118 * 294.94109 * 3 2 1 31 31 H 1.00903 * 111.00352 * 298.45507 * 6 4 3 32 32 H 1.08993 * 109.47065 * 296.79992 * 7 6 4 33 33 H 1.08998 * 109.46526 * 56.80081 * 7 6 4 34 34 H 0.97008 * 119.99544 * 0.02562 * 10 8 7 35 35 H 1.09000 * 109.46749 * 300.00252 * 11 10 8 36 36 H 1.08996 * 109.47019 * 60.00020 * 11 10 8 37 37 H 0.97002 * 119.99899 * 179.97438 * 15 14 12 38 38 H 1.08996 * 112.85036 * 311.19852 * 20 4 3 39 39 H 1.08997 * 113.61363 * 105.47023 * 21 20 4 40 40 H 1.09001 * 113.61550 * 334.56901 * 21 20 4 41 41 H 1.08995 * 113.61901 * 139.98283 * 22 21 20 42 42 H 1.08998 * 113.61510 * 270.80329 * 22 21 20 43 43 H 1.09001 * 113.61467 * 89.15849 * 23 22 21 44 44 H 1.08996 * 113.61874 * 220.06610 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5647 1.4444 0.1273 5 1 3.8546 0.9068 1.0301 6 7 4.1548 0.7857 -1.0457 7 6 3.8319 1.5171 -2.2781 8 6 4.5174 0.8582 -3.4473 9 8 5.2066 -0.1240 -3.2714 10 7 4.3637 1.3600 -4.6888 11 6 5.0296 0.7193 -5.8255 12 6 4.6985 1.4697 -7.0898 13 1 4.0566 2.3373 -7.0504 14 6 5.2159 1.0491 -8.2966 15 7 4.9265 1.7036 -9.4000 16 14 6.3279 -0.4504 -8.3645 17 1 5.5046 -1.6681 -8.5758 18 1 7.2902 -0.3026 -9.4857 19 1 7.0728 -0.5723 -7.0857 20 6 4.0679 2.8870 0.2090 21 6 5.5959 2.9999 0.3402 22 6 5.3469 4.1397 1.3420 23 6 3.9799 3.4931 1.6216 24 1 -0.3634 -1.0277 -0.0005 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 1.8933 -0.5138 -0.8900 28 1 1.8934 -0.5139 0.8899 29 1 1.6045 1.9819 0.8412 30 1 1.7526 1.9295 -0.9318 31 1 3.8575 -0.1765 -1.1078 32 1 2.7535 1.5055 -2.4355 33 1 4.1751 2.5478 -2.1894 34 1 3.8121 2.1455 -4.8295 35 1 6.1082 0.7309 -5.6684 36 1 4.6864 -0.3114 -5.9138 37 1 5.2908 1.4079 -10.2490 38 1 3.6475 3.5265 -0.5672 39 1 6.0900 3.3238 -0.5757 40 1 6.0620 2.1211 0.7858 41 1 6.0209 4.1234 2.1984 42 1 5.2778 5.1229 0.8765 43 1 4.0034 2.7493 2.4180 44 1 3.1713 4.2145 1.7385 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000324954140.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:42:11 Heat of formation + Delta-G solvation = -59.043887 kcal Electronic energy + Delta-G solvation = -20847.226533 eV Core-core repulsion = 17798.369702 eV Total energy + Delta-G solvation = -3048.856831 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.91936 -39.96550 -37.32049 -36.11620 -34.42849 -34.29841 -30.94901 -29.69687 -27.10929 -26.54564 -26.16644 -23.99573 -22.75223 -21.72482 -20.89045 -20.12256 -19.17173 -17.99224 -17.21220 -16.87794 -16.39463 -16.33069 -15.94987 -15.64660 -15.53457 -14.95021 -14.53765 -14.52086 -14.30873 -13.92981 -13.83628 -13.46798 -13.18717 -13.07294 -12.85797 -12.73297 -12.57846 -12.29149 -12.16274 -11.94382 -11.87226 -11.66349 -11.50113 -11.25181 -11.05038 -10.92546 -10.85634 -10.73126 -9.91409 -9.24656 -8.40824 -6.47684 1.31782 1.34212 1.47122 1.76950 2.27351 2.38819 2.94617 3.29214 3.69321 3.85526 3.93751 3.98227 4.08433 4.12379 4.17537 4.25100 4.35779 4.42431 4.55588 4.61471 4.75883 4.79188 4.83701 4.92204 4.97226 5.00142 5.02652 5.04039 5.10532 5.16328 5.23615 5.25537 5.27479 5.34059 5.44406 5.50922 5.53827 5.72109 6.01050 6.12950 6.42406 6.53506 6.88298 7.15742 7.45013 8.73941 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.020215 B = 0.003990 C = 0.003622 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1384.795912 B = 7015.894250 C = 7728.111686 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.127 4.127 3 C -0.150 4.150 4 C 0.104 3.896 5 H 0.089 0.911 6 N -0.674 5.674 7 C 0.054 3.946 8 C 0.497 3.503 9 O -0.586 6.586 10 N -0.709 5.709 11 C 0.233 3.767 12 C -0.547 4.547 13 H 0.060 0.940 14 C 0.027 3.973 15 N -0.931 5.931 16 Si 0.937 3.063 17 H -0.264 1.264 18 H -0.272 1.272 19 H -0.262 1.262 20 C -0.107 4.107 21 C -0.127 4.127 22 C -0.144 4.144 23 C -0.122 4.122 24 H 0.053 0.947 25 H 0.063 0.937 26 H 0.049 0.951 27 H 0.045 0.955 28 H 0.068 0.932 29 H 0.082 0.918 30 H 0.061 0.939 31 H 0.345 0.655 32 H 0.079 0.921 33 H 0.113 0.887 34 H 0.408 0.592 35 H 0.009 0.991 36 H 0.010 0.990 37 H 0.272 0.728 38 H 0.087 0.913 39 H 0.046 0.954 40 H 0.073 0.927 41 H 0.069 0.931 42 H 0.079 0.921 43 H 0.087 0.913 44 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.838 2.636 24.163 25.250 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.165 4.165 3 C -0.189 4.189 4 C -0.005 4.005 5 H 0.107 0.893 6 N -0.306 5.306 7 C -0.078 4.078 8 C 0.284 3.716 9 O -0.466 6.466 10 N -0.359 5.359 11 C 0.109 3.891 12 C -0.585 4.585 13 H 0.078 0.922 14 C -0.173 4.173 15 N -0.570 5.570 16 Si 0.761 3.239 17 H -0.189 1.189 18 H -0.197 1.197 19 H -0.187 1.187 20 C -0.125 4.125 21 C -0.165 4.165 22 C -0.181 4.181 23 C -0.160 4.160 24 H 0.072 0.928 25 H 0.082 0.918 26 H 0.068 0.932 27 H 0.064 0.936 28 H 0.086 0.914 29 H 0.100 0.900 30 H 0.080 0.920 31 H 0.164 0.836 32 H 0.096 0.904 33 H 0.131 0.869 34 H 0.243 0.757 35 H 0.027 0.973 36 H 0.028 0.972 37 H 0.082 0.918 38 H 0.105 0.895 39 H 0.065 0.935 40 H 0.092 0.908 41 H 0.088 0.912 42 H 0.098 0.902 43 H 0.105 0.895 44 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -5.700 2.243 24.147 24.912 hybrid contribution -0.569 -0.504 -1.050 1.297 sum -6.269 1.738 23.096 23.995 Atomic orbital electron populations 1.21743 0.95238 1.01754 1.01978 1.21536 0.96539 0.96854 1.01572 1.22299 0.96502 0.97057 1.03005 1.21724 0.91572 0.94573 0.92674 0.89322 1.60260 1.63445 1.05899 1.00992 1.21748 0.98866 0.99424 0.87806 1.21412 0.81286 0.84174 0.84720 1.90623 1.41793 1.28594 1.85584 1.46038 1.50809 1.32457 1.06637 1.19052 0.92481 0.93078 0.84449 1.21301 1.31732 1.14264 0.91171 0.92227 1.25592 0.97162 0.99586 0.94976 1.69980 1.45851 1.41790 0.99350 0.85862 0.79552 0.79934 0.78574 1.18929 1.19723 1.18690 1.22660 0.96319 0.95006 0.98559 1.22728 0.96176 0.98676 0.98928 1.22860 0.97920 0.97995 0.99352 1.22888 0.97403 0.99886 0.95805 0.92784 0.91804 0.93217 0.93637 0.91370 0.89964 0.92042 0.83566 0.90371 0.86879 0.75714 0.97280 0.97213 0.91830 0.89466 0.93547 0.90785 0.91232 0.90199 0.89489 0.90632 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.14 9.91 71.98 0.71 -1.43 16 2 C -0.13 -1.99 5.54 30.59 0.17 -1.82 16 3 C -0.15 -2.20 4.49 30.59 0.14 -2.07 16 4 C 0.10 1.80 2.34 44.92 0.11 1.90 16 5 H 0.09 1.49 7.95 -2.39 -0.02 1.47 16 6 N -0.67 -16.36 5.74 -495.58 -2.84 -19.21 16 7 C 0.05 1.38 5.43 85.56 0.46 1.84 16 8 C 0.50 18.65 7.87 87.66 0.69 19.34 16 9 O -0.59 -26.89 16.27 -3.02 -0.05 -26.94 16 10 N -0.71 -28.63 5.55 -466.80 -2.59 -31.22 16 11 C 0.23 11.66 4.50 85.63 0.38 12.04 16 12 C -0.55 -30.51 9.83 25.60 0.25 -30.26 16 13 H 0.06 3.48 7.84 -2.91 -0.02 3.45 16 14 C 0.03 1.55 5.47 84.66 0.46 2.01 16 15 N -0.93 -55.91 13.96 21.45 0.30 -55.61 16 16 Si 0.94 44.64 27.47 68.60 1.88 46.52 16 17 H -0.26 -12.15 7.11 99.48 0.71 -11.45 16 18 H -0.27 -12.40 7.11 99.48 0.71 -11.69 16 19 H -0.26 -12.52 6.54 99.48 0.65 -11.86 16 20 C -0.11 -1.76 2.21 -10.20 -0.02 -1.79 16 21 C -0.13 -2.50 7.40 31.12 0.23 -2.27 16 22 C -0.14 -2.17 8.08 31.12 0.25 -1.92 16 23 C -0.12 -1.58 7.65 31.18 0.24 -1.35 16 24 H 0.05 0.76 8.14 -2.39 -0.02 0.74 16 25 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 26 H 0.05 0.75 8.14 -2.39 -0.02 0.73 16 27 H 0.04 0.86 7.02 -2.39 -0.02 0.84 16 28 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 29 H 0.08 1.01 8.14 -2.39 -0.02 0.99 16 30 H 0.06 0.97 6.36 -2.39 -0.02 0.96 16 31 H 0.34 8.90 7.06 -89.69 -0.63 8.27 16 32 H 0.08 1.70 6.46 -2.39 -0.02 1.69 16 33 H 0.11 2.61 6.37 -2.39 -0.02 2.60 16 34 H 0.41 14.32 8.32 -92.70 -0.77 13.55 16 35 H 0.01 0.49 7.20 -2.39 -0.02 0.47 16 36 H 0.01 0.52 7.57 -2.39 -0.02 0.50 16 37 H 0.27 15.23 8.31 -92.71 -0.77 14.46 16 38 H 0.09 1.45 7.13 -2.39 -0.02 1.44 16 39 H 0.05 1.07 8.14 -2.39 -0.02 1.05 16 40 H 0.07 1.58 8.10 -2.39 -0.02 1.56 16 41 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 42 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 43 H 0.09 1.02 7.97 -2.39 -0.02 1.00 16 44 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 Total: -1.00 -67.10 347.40 0.30 -66.80 By element: Atomic # 1 Polarization: 25.89 SS G_CDS: -0.48 Total: 25.41 kcal Atomic # 6 Polarization: -9.83 SS G_CDS: 4.08 Total: -5.75 kcal Atomic # 7 Polarization: -100.90 SS G_CDS: -5.13 Total: -106.04 kcal Atomic # 8 Polarization: -26.89 SS G_CDS: -0.05 Total: -26.94 kcal Atomic # 14 Polarization: 44.64 SS G_CDS: 1.88 Total: 46.52 kcal Total: -67.10 0.30 -66.80 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000324954140.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.759 kcal (2) G-P(sol) polarization free energy of solvation -67.101 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.343 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.299 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.803 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.044 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds