Wall clock time and date at job start Mon Mar 30 2020 00:42:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52995 * 109.47567 * 2 1 4 4 C 1.53000 * 109.47568 * 184.67732 * 3 2 1 5 5 H 1.08997 * 109.46908 * 177.23022 * 4 3 2 6 6 N 1.46897 * 109.46959 * 57.23098 * 4 3 2 7 7 C 1.46901 * 111.00316 * 84.62422 * 6 4 3 8 8 C 1.50699 * 109.47067 * 185.25941 * 7 6 4 9 9 O 1.21284 * 120.00020 * 359.97438 * 8 7 6 10 10 N 1.34778 * 119.99640 * 179.97438 * 8 7 6 11 11 C 1.46497 * 119.99868 * 179.97438 * 10 8 7 12 12 C 1.50701 * 109.47543 * 180.02562 * 11 10 8 13 13 H 1.08001 * 119.99442 * 359.97438 * 12 11 10 14 14 C 1.37873 * 120.00510 * 180.02562 * 12 11 10 15 15 N 1.31508 * 119.99990 * 179.97438 * 14 12 11 16 16 Si 1.86801 * 120.00019 * 359.97438 * 14 12 11 17 17 H 1.48492 * 109.47024 * 90.00103 * 16 14 12 18 18 H 1.48492 * 109.47039 * 210.00639 * 16 14 12 19 19 H 1.48505 * 109.46770 * 330.00272 * 16 14 12 20 20 C 1.52998 * 109.46955 * 297.23029 * 4 3 2 21 21 C 1.53778 * 113.61551 * 279.13727 * 20 4 3 22 22 C 1.53954 * 87.02071 * 220.04696 * 21 20 4 23 23 C 1.53781 * 113.61634 * 181.52701 * 20 4 3 24 24 H 1.09000 * 109.47191 * 60.00225 * 1 2 3 25 25 H 1.09002 * 109.47445 * 179.97438 * 1 2 3 26 26 H 1.08996 * 109.46995 * 299.99879 * 1 2 3 27 27 H 1.09008 * 109.46661 * 239.99826 * 2 1 3 28 28 H 1.09004 * 109.47503 * 120.00655 * 2 1 3 29 29 H 1.09008 * 109.46888 * 304.67973 * 3 2 1 30 30 H 1.08998 * 109.46746 * 64.67025 * 3 2 1 31 31 H 1.00907 * 111.00042 * 208.57771 * 6 4 3 32 32 H 1.09005 * 109.46929 * 305.25674 * 7 6 4 33 33 H 1.08996 * 109.46743 * 65.25757 * 7 6 4 34 34 H 0.96999 * 120.00321 * 0.02562 * 10 8 7 35 35 H 1.09007 * 109.47512 * 300.00196 * 11 10 8 36 36 H 1.09001 * 109.47450 * 60.00130 * 11 10 8 37 37 H 0.97003 * 120.00037 * 179.97438 * 15 14 12 38 38 H 1.09004 * 112.84900 * 50.33108 * 20 4 3 39 39 H 1.09001 * 113.61209 * 334.56599 * 21 20 4 40 40 H 1.09003 * 113.61674 * 105.47081 * 21 20 4 41 41 H 1.09000 * 113.53973 * 270.81206 * 22 21 20 42 42 H 1.09000 * 113.74504 * 139.93793 * 22 21 20 43 43 H 1.08995 * 113.61817 * 254.53296 * 23 20 4 44 44 H 1.09004 * 113.60695 * 25.43342 * 23 20 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5655 1.4440 -0.1176 5 1 3.9250 2.4718 -0.1671 6 7 3.9634 0.7268 -1.3363 7 6 3.9268 1.6152 -2.5057 8 6 4.2140 0.8177 -3.7516 9 8 4.4286 -0.3735 -3.6732 10 7 4.2325 1.4281 -4.9531 11 6 4.5123 0.6529 -6.1643 12 6 4.4747 1.5642 -7.3640 13 1 4.2630 2.6156 -7.2369 14 6 4.7093 1.0556 -8.6238 15 7 4.6760 1.8508 -9.6707 16 14 5.0747 -0.7631 -8.8437 17 1 3.8036 -1.5015 -9.0532 18 1 5.9570 -0.9517 -10.0231 19 1 5.7541 -1.2818 -7.6293 20 6 4.1719 0.7499 1.1036 21 6 4.2610 1.6534 2.3447 22 6 5.6373 1.0167 2.6103 23 6 5.7096 0.7308 1.1010 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.8932 -0.5139 -0.8901 28 1 1.8934 -0.5139 0.8899 29 1 1.6099 1.9799 -0.8452 30 1 1.7466 1.9315 0.9289 31 1 4.8753 0.3086 -1.2284 32 1 2.9396 2.0706 -2.5853 33 1 4.6790 2.3959 -2.3925 34 1 4.0612 2.3808 -5.0158 35 1 5.4998 0.1982 -6.0847 36 1 3.7607 -0.1284 -6.2774 37 1 4.8415 1.4930 -10.5570 38 1 3.7234 -0.2233 1.3033 39 1 4.3100 2.7164 2.1083 40 1 3.5174 1.4222 3.1075 41 1 5.5896 0.1167 3.2234 42 1 6.3893 1.7256 2.9569 43 1 6.1338 -0.2442 0.8612 44 1 6.1552 1.5410 0.5240 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000324954141.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:42:14 Heat of formation + Delta-G solvation = -38.514244 kcal Electronic energy + Delta-G solvation = -20681.593160 eV Core-core repulsion = 17633.626561 eV Total energy + Delta-G solvation = -3047.966599 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.84739 -38.74353 -36.10170 -34.27929 -33.59575 -32.32915 -29.84403 -28.13104 -26.38671 -25.49908 -24.89432 -22.48469 -21.89824 -20.37835 -19.80316 -19.22727 -17.40929 -16.51208 -15.86019 -15.69980 -15.44220 -14.99864 -14.65263 -14.27061 -14.09150 -13.92293 -13.39484 -13.06593 -12.91137 -12.68812 -12.52025 -12.30843 -12.13041 -12.01265 -11.96548 -11.61178 -11.30726 -11.00645 -10.89181 -10.75058 -10.70727 -10.47826 -10.30027 -10.16493 -9.96053 -9.48416 -9.14549 -8.76724 -8.32549 -8.09449 -6.20796 -4.22906 3.26700 3.30757 3.34347 3.43201 3.70706 4.30320 4.34836 4.38194 4.43118 4.61588 4.70462 4.91801 5.08549 5.11958 5.14593 5.22558 5.31661 5.39320 5.44591 5.48419 5.48728 5.57348 5.63886 5.66083 5.67595 5.71490 5.81877 5.86993 5.96647 6.03015 6.15528 6.29050 6.34411 6.56920 6.80633 7.01397 7.09464 7.27096 7.40399 7.44207 8.16444 8.54862 8.76793 8.99418 9.39776 10.91200 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.024794 B = 0.003588 C = 0.003378 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1129.038597 B = 7802.466912 C = 8287.150416 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.118 4.118 3 C -0.106 4.106 4 C 0.097 3.903 5 H 0.042 0.958 6 N -0.663 5.663 7 C 0.041 3.959 8 C 0.499 3.501 9 O -0.544 6.544 10 N -0.709 5.709 11 C 0.222 3.778 12 C -0.543 4.543 13 H 0.079 0.921 14 C 0.077 3.923 15 N -0.893 5.893 16 Si 0.877 3.123 17 H -0.273 1.273 18 H -0.284 1.284 19 H -0.261 1.261 20 C -0.109 4.109 21 C -0.133 4.133 22 C -0.141 4.141 23 C -0.144 4.144 24 H 0.051 0.949 25 H 0.049 0.951 26 H 0.046 0.954 27 H 0.083 0.917 28 H 0.054 0.946 29 H 0.058 0.942 30 H 0.058 0.942 31 H 0.350 0.650 32 H 0.096 0.904 33 H 0.053 0.947 34 H 0.395 0.605 35 H 0.024 0.976 36 H 0.020 0.980 37 H 0.267 0.733 38 H 0.100 0.900 39 H 0.079 0.921 40 H 0.066 0.934 41 H 0.079 0.921 42 H 0.065 0.935 43 H 0.070 0.930 44 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.558 0.926 24.152 24.304 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.156 4.156 3 C -0.144 4.144 4 C -0.013 4.013 5 H 0.060 0.940 6 N -0.296 5.296 7 C -0.092 4.092 8 C 0.283 3.717 9 O -0.422 6.422 10 N -0.359 5.359 11 C 0.099 3.901 12 C -0.581 4.581 13 H 0.097 0.903 14 C -0.127 4.127 15 N -0.531 5.531 16 Si 0.704 3.296 17 H -0.198 1.198 18 H -0.209 1.209 19 H -0.185 1.185 20 C -0.128 4.128 21 C -0.171 4.171 22 C -0.178 4.178 23 C -0.182 4.182 24 H 0.070 0.930 25 H 0.069 0.931 26 H 0.065 0.935 27 H 0.101 0.899 28 H 0.072 0.928 29 H 0.077 0.923 30 H 0.077 0.923 31 H 0.170 0.830 32 H 0.114 0.886 33 H 0.071 0.929 34 H 0.228 0.772 35 H 0.042 0.958 36 H 0.038 0.962 37 H 0.077 0.923 38 H 0.118 0.882 39 H 0.097 0.903 40 H 0.085 0.915 41 H 0.097 0.903 42 H 0.084 0.916 43 H 0.089 0.911 44 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -2.998 -0.189 23.850 24.038 hybrid contribution 0.838 0.242 -0.271 0.913 sum -2.160 0.053 23.579 23.677 Atomic orbital electron populations 1.21796 0.96867 1.01200 1.01130 1.21456 0.94438 0.96700 1.02985 1.21559 0.94162 0.97694 1.00949 1.21559 0.95821 0.95149 0.88772 0.93983 1.60065 1.35697 1.32760 1.01085 1.21850 1.02568 0.94446 0.90334 1.20433 0.78019 0.88362 0.84853 1.90651 1.49525 1.15269 1.86776 1.46172 1.70220 1.12637 1.06821 1.19459 0.95996 0.92469 0.82126 1.21105 1.50596 0.96600 0.89810 0.90298 1.24800 0.94115 0.98203 0.95543 1.69882 1.48699 1.35572 0.98911 0.86805 0.79132 0.85277 0.78412 1.19830 1.20927 1.18511 1.22762 0.95424 1.00191 0.94410 1.22949 0.97349 0.99214 0.97616 1.22808 0.97528 1.00861 0.96652 1.22956 0.96330 1.02205 0.96674 0.92965 0.93141 0.93522 0.89858 0.92765 0.92286 0.92307 0.83018 0.88559 0.92892 0.77165 0.95842 0.96199 0.92277 0.88217 0.90255 0.91516 0.90276 0.91645 0.91125 0.90399 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.50 9.91 37.15 0.37 -1.13 16 2 C -0.12 -1.26 5.46 -26.74 -0.15 -1.41 16 3 C -0.11 -1.04 5.01 -26.73 -0.13 -1.17 16 4 C 0.10 0.96 2.08 -67.72 -0.14 0.82 16 5 H 0.04 0.41 7.70 -51.93 -0.40 0.01 16 6 N -0.66 -8.48 4.87 -108.00 -0.53 -9.01 16 7 C 0.04 0.55 5.94 -4.98 -0.03 0.52 16 8 C 0.50 9.46 7.88 -10.99 -0.09 9.37 16 9 O -0.54 -12.43 16.32 5.55 0.09 -12.34 16 10 N -0.71 -14.38 5.55 -61.47 -0.34 -14.72 16 11 C 0.22 5.51 4.50 -5.19 -0.02 5.49 16 12 C -0.54 -15.00 9.83 -34.44 -0.34 -15.34 16 13 H 0.08 2.26 7.84 -52.49 -0.41 1.85 16 14 C 0.08 2.19 5.47 -17.82 -0.10 2.10 16 15 N -0.89 -26.66 13.96 55.43 0.77 -25.89 16 16 Si 0.88 21.64 27.47 -169.99 -4.67 16.97 16 17 H -0.27 -6.64 7.11 56.52 0.40 -6.24 16 18 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 19 H -0.26 -6.41 6.54 56.52 0.37 -6.04 16 20 C -0.11 -0.96 3.02 -89.81 -0.27 -1.23 16 21 C -0.13 -0.99 7.62 -25.83 -0.20 -1.19 16 22 C -0.14 -1.04 8.09 -25.83 -0.21 -1.25 16 23 C -0.14 -1.23 6.58 -25.92 -0.17 -1.41 16 24 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 25 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 26 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 27 H 0.08 1.12 7.38 -51.92 -0.38 0.74 16 28 H 0.05 0.54 6.60 -51.93 -0.34 0.20 16 29 H 0.06 0.62 7.42 -51.92 -0.39 0.23 16 30 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 31 H 0.35 4.67 7.32 -39.29 -0.29 4.38 16 32 H 0.10 1.19 7.35 -51.93 -0.38 0.80 16 33 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 34 H 0.40 7.02 8.32 -40.82 -0.34 6.68 16 35 H 0.02 0.62 7.20 -51.93 -0.37 0.24 16 36 H 0.02 0.52 7.57 -51.93 -0.39 0.13 16 37 H 0.27 7.46 8.31 -40.82 -0.34 7.12 16 38 H 0.10 0.94 6.43 -51.93 -0.33 0.60 16 39 H 0.08 0.57 7.99 -51.93 -0.41 0.16 16 40 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 41 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 42 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 43 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 44 H 0.08 0.69 8.10 -51.93 -0.42 0.26 16 LS Contribution 349.11 15.07 5.26 5.26 Total: -1.00 -31.28 349.11 -8.73 -40.00 By element: Atomic # 1 Polarization: 13.37 SS G_CDS: -7.84 Total: 5.53 kcal Atomic # 6 Polarization: -4.34 SS G_CDS: -1.48 Total: -5.82 kcal Atomic # 7 Polarization: -49.52 SS G_CDS: -0.09 Total: -49.62 kcal Atomic # 8 Polarization: -12.43 SS G_CDS: 0.09 Total: -12.34 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -4.67 Total: 16.97 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -31.28 -8.73 -40.00 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000324954141.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.489 kcal (2) G-P(sol) polarization free energy of solvation -31.277 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.788 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.726 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.003 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.514 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds