Wall clock time and date at job start Mon Mar 30 2020 00:42:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52995 * 109.47567 * 2 1 4 4 C 1.53000 * 109.47568 * 184.67732 * 3 2 1 5 5 H 1.08997 * 109.46908 * 177.23022 * 4 3 2 6 6 N 1.46897 * 109.46959 * 57.23098 * 4 3 2 7 7 C 1.46901 * 111.00316 * 84.62422 * 6 4 3 8 8 C 1.50699 * 109.47067 * 185.25941 * 7 6 4 9 9 O 1.21284 * 120.00020 * 359.97438 * 8 7 6 10 10 N 1.34778 * 119.99640 * 179.97438 * 8 7 6 11 11 C 1.46497 * 119.99868 * 179.97438 * 10 8 7 12 12 C 1.50701 * 109.47543 * 180.02562 * 11 10 8 13 13 H 1.08001 * 119.99442 * 359.97438 * 12 11 10 14 14 C 1.37873 * 120.00510 * 180.02562 * 12 11 10 15 15 N 1.31508 * 119.99990 * 179.97438 * 14 12 11 16 16 Si 1.86801 * 120.00019 * 359.97438 * 14 12 11 17 17 H 1.48492 * 109.47024 * 90.00103 * 16 14 12 18 18 H 1.48492 * 109.47039 * 210.00639 * 16 14 12 19 19 H 1.48505 * 109.46770 * 330.00272 * 16 14 12 20 20 C 1.52998 * 109.46955 * 297.23029 * 4 3 2 21 21 C 1.53778 * 113.61551 * 279.13727 * 20 4 3 22 22 C 1.53954 * 87.02071 * 220.04696 * 21 20 4 23 23 C 1.53781 * 113.61634 * 181.52701 * 20 4 3 24 24 H 1.09000 * 109.47191 * 60.00225 * 1 2 3 25 25 H 1.09002 * 109.47445 * 179.97438 * 1 2 3 26 26 H 1.08996 * 109.46995 * 299.99879 * 1 2 3 27 27 H 1.09008 * 109.46661 * 239.99826 * 2 1 3 28 28 H 1.09004 * 109.47503 * 120.00655 * 2 1 3 29 29 H 1.09008 * 109.46888 * 304.67973 * 3 2 1 30 30 H 1.08998 * 109.46746 * 64.67025 * 3 2 1 31 31 H 1.00907 * 111.00042 * 208.57771 * 6 4 3 32 32 H 1.09005 * 109.46929 * 305.25674 * 7 6 4 33 33 H 1.08996 * 109.46743 * 65.25757 * 7 6 4 34 34 H 0.96999 * 120.00321 * 0.02562 * 10 8 7 35 35 H 1.09007 * 109.47512 * 300.00196 * 11 10 8 36 36 H 1.09001 * 109.47450 * 60.00130 * 11 10 8 37 37 H 0.97003 * 120.00037 * 179.97438 * 15 14 12 38 38 H 1.09004 * 112.84900 * 50.33108 * 20 4 3 39 39 H 1.09001 * 113.61209 * 334.56599 * 21 20 4 40 40 H 1.09003 * 113.61674 * 105.47081 * 21 20 4 41 41 H 1.09000 * 113.53973 * 270.81206 * 22 21 20 42 42 H 1.09000 * 113.74504 * 139.93793 * 22 21 20 43 43 H 1.08995 * 113.61817 * 254.53296 * 23 20 4 44 44 H 1.09004 * 113.60695 * 25.43342 * 23 20 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5655 1.4440 -0.1176 5 1 3.9250 2.4718 -0.1671 6 7 3.9634 0.7268 -1.3363 7 6 3.9268 1.6152 -2.5057 8 6 4.2140 0.8177 -3.7516 9 8 4.4286 -0.3735 -3.6732 10 7 4.2325 1.4281 -4.9531 11 6 4.5123 0.6529 -6.1643 12 6 4.4747 1.5642 -7.3640 13 1 4.2630 2.6156 -7.2369 14 6 4.7093 1.0556 -8.6238 15 7 4.6760 1.8508 -9.6707 16 14 5.0747 -0.7631 -8.8437 17 1 3.8036 -1.5015 -9.0532 18 1 5.9570 -0.9517 -10.0231 19 1 5.7541 -1.2818 -7.6293 20 6 4.1719 0.7499 1.1036 21 6 4.2610 1.6534 2.3447 22 6 5.6373 1.0167 2.6103 23 6 5.7096 0.7308 1.1010 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.8932 -0.5139 -0.8901 28 1 1.8934 -0.5139 0.8899 29 1 1.6099 1.9799 -0.8452 30 1 1.7466 1.9315 0.9289 31 1 4.8753 0.3086 -1.2284 32 1 2.9396 2.0706 -2.5853 33 1 4.6790 2.3959 -2.3925 34 1 4.0612 2.3808 -5.0158 35 1 5.4998 0.1982 -6.0847 36 1 3.7607 -0.1284 -6.2774 37 1 4.8415 1.4930 -10.5570 38 1 3.7234 -0.2233 1.3033 39 1 4.3100 2.7164 2.1083 40 1 3.5174 1.4222 3.1075 41 1 5.5896 0.1167 3.2234 42 1 6.3893 1.7256 2.9569 43 1 6.1338 -0.2442 0.8612 44 1 6.1552 1.5410 0.5240 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000324954141.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:42:13 Heat of formation + Delta-G solvation = -59.364629 kcal Electronic energy + Delta-G solvation = -20682.497300 eV Core-core repulsion = 17633.626561 eV Total energy + Delta-G solvation = -3048.870740 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.80165 -40.07495 -36.97405 -36.10181 -34.58586 -34.37720 -30.99102 -29.76609 -27.36627 -26.15802 -25.91853 -23.80982 -23.27568 -21.51580 -21.02662 -19.97677 -19.15442 -17.93439 -17.13365 -17.11885 -16.42116 -16.27725 -15.96578 -15.49283 -15.33269 -14.98618 -14.70921 -14.43150 -14.23855 -14.08953 -13.65072 -13.29667 -13.22556 -13.07695 -12.84015 -12.73374 -12.70012 -12.55509 -12.07853 -11.94062 -11.66175 -11.60968 -11.50349 -11.13408 -11.06204 -10.92635 -10.86880 -10.71504 -9.90721 -9.26595 -8.40853 -6.47706 1.32097 1.34201 1.46889 1.77960 2.27286 2.37138 2.94608 3.26737 3.72172 3.74182 3.93162 3.96554 4.04680 4.18626 4.32003 4.32745 4.38293 4.45309 4.51582 4.62832 4.79233 4.86758 4.88171 4.91855 4.95754 4.97090 5.03087 5.08071 5.11278 5.15897 5.20427 5.26009 5.34098 5.42237 5.52809 5.54329 5.65709 5.68258 6.03257 6.14104 6.43126 6.53634 6.89276 7.15822 7.46023 8.73920 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.024794 B = 0.003588 C = 0.003378 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1129.038597 B = 7802.466912 C = 8287.150416 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.115 4.115 3 C -0.103 4.103 4 C 0.100 3.900 5 H 0.053 0.947 6 N -0.677 5.677 7 C 0.055 3.945 8 C 0.498 3.502 9 O -0.585 6.585 10 N -0.709 5.709 11 C 0.233 3.767 12 C -0.547 4.547 13 H 0.060 0.940 14 C 0.026 3.974 15 N -0.931 5.931 16 Si 0.938 3.062 17 H -0.266 1.266 18 H -0.272 1.272 19 H -0.262 1.262 20 C -0.109 4.109 21 C -0.125 4.125 22 C -0.137 4.137 23 C -0.148 4.148 24 H 0.044 0.956 25 H 0.048 0.952 26 H 0.061 0.939 27 H 0.051 0.949 28 H 0.060 0.940 29 H 0.053 0.947 30 H 0.077 0.923 31 H 0.345 0.655 32 H 0.114 0.886 33 H 0.080 0.920 34 H 0.408 0.592 35 H 0.011 0.989 36 H 0.008 0.992 37 H 0.272 0.728 38 H 0.092 0.908 39 H 0.085 0.915 40 H 0.074 0.926 41 H 0.082 0.918 42 H 0.071 0.929 43 H 0.060 0.940 44 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.762 1.217 26.100 26.274 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.152 4.152 3 C -0.141 4.141 4 C -0.009 4.009 5 H 0.071 0.929 6 N -0.310 5.310 7 C -0.077 4.077 8 C 0.285 3.715 9 O -0.465 6.465 10 N -0.360 5.360 11 C 0.109 3.891 12 C -0.584 4.584 13 H 0.078 0.922 14 C -0.174 4.174 15 N -0.570 5.570 16 Si 0.761 3.239 17 H -0.191 1.191 18 H -0.197 1.197 19 H -0.186 1.186 20 C -0.128 4.128 21 C -0.163 4.163 22 C -0.175 4.175 23 C -0.186 4.186 24 H 0.063 0.937 25 H 0.067 0.933 26 H 0.080 0.920 27 H 0.070 0.930 28 H 0.078 0.922 29 H 0.071 0.929 30 H 0.095 0.905 31 H 0.164 0.836 32 H 0.132 0.868 33 H 0.098 0.902 34 H 0.243 0.757 35 H 0.029 0.971 36 H 0.026 0.974 37 H 0.082 0.918 38 H 0.110 0.890 39 H 0.104 0.896 40 H 0.093 0.907 41 H 0.101 0.899 42 H 0.090 0.910 43 H 0.079 0.921 44 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -3.215 0.135 25.824 26.024 hybrid contribution 0.885 0.188 -0.839 1.234 sum -2.330 0.323 24.985 25.096 Atomic orbital electron populations 1.21782 0.96228 1.01295 1.01536 1.21381 0.94993 0.97152 1.01703 1.21562 0.93915 0.96996 1.01641 1.21619 0.95960 0.95445 0.87877 0.92914 1.60065 1.35562 1.33437 1.01920 1.21766 1.04239 0.93967 0.87774 1.21373 0.76254 0.88204 0.85676 1.90629 1.51107 1.17379 1.87385 1.46035 1.70623 1.13101 1.06200 1.19048 0.94891 0.92009 0.83105 1.21306 1.49930 0.96213 0.90992 0.92219 1.25598 0.94030 1.02400 0.95376 1.69979 1.49914 1.37550 0.99564 0.85854 0.79320 0.80180 0.78515 1.19073 1.19704 1.18587 1.22724 0.95296 1.00140 0.94591 1.22924 0.97418 0.99178 0.96790 1.22805 0.97800 1.01206 0.95670 1.22970 0.96174 1.01675 0.97761 0.93657 0.93279 0.91951 0.93016 0.92154 0.92855 0.90451 0.83562 0.86771 0.90227 0.75663 0.97113 0.97394 0.91832 0.89024 0.89637 0.90684 0.89913 0.91005 0.92083 0.90553 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.76 9.91 71.98 0.71 -2.04 16 2 C -0.11 -2.31 5.46 30.59 0.17 -2.14 16 3 C -0.10 -1.80 5.01 30.59 0.15 -1.64 16 4 C 0.10 1.77 2.08 44.92 0.09 1.87 16 5 H 0.05 0.86 7.70 -2.39 -0.02 0.84 16 6 N -0.68 -16.44 4.87 -495.59 -2.42 -18.86 16 7 C 0.05 1.38 5.94 85.56 0.51 1.89 16 8 C 0.50 18.51 7.88 87.66 0.69 19.20 16 9 O -0.58 -26.75 16.32 -3.04 -0.05 -26.80 16 10 N -0.71 -28.41 5.55 -466.78 -2.59 -31.00 16 11 C 0.23 11.63 4.50 85.63 0.39 12.01 16 12 C -0.55 -30.46 9.83 25.60 0.25 -30.21 16 13 H 0.06 3.48 7.84 -2.91 -0.02 3.45 16 14 C 0.03 1.50 5.47 84.65 0.46 1.96 16 15 N -0.93 -55.96 13.96 21.44 0.30 -55.66 16 16 Si 0.94 44.64 27.47 68.60 1.88 46.53 16 17 H -0.27 -12.29 7.11 99.48 0.71 -11.58 16 18 H -0.27 -12.37 7.11 99.48 0.71 -11.66 16 19 H -0.26 -12.40 6.54 99.48 0.65 -11.75 16 20 C -0.11 -1.70 3.02 -10.27 -0.03 -1.73 16 21 C -0.13 -1.51 7.62 31.18 0.24 -1.28 16 22 C -0.14 -1.73 8.09 31.18 0.25 -1.48 16 23 C -0.15 -2.33 6.58 31.12 0.20 -2.12 16 24 H 0.04 0.88 8.14 -2.39 -0.02 0.86 16 25 H 0.05 0.89 8.14 -2.39 -0.02 0.87 16 26 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 27 H 0.05 1.38 7.38 -2.38 -0.02 1.36 16 28 H 0.06 1.12 6.60 -2.39 -0.02 1.11 16 29 H 0.05 0.99 7.42 -2.38 -0.02 0.98 16 30 H 0.08 1.09 8.14 -2.39 -0.02 1.07 16 31 H 0.34 8.94 7.32 -89.69 -0.66 8.28 16 32 H 0.11 2.52 7.35 -2.38 -0.02 2.51 16 33 H 0.08 1.64 8.14 -2.39 -0.02 1.62 16 34 H 0.41 14.17 8.32 -92.71 -0.77 13.40 16 35 H 0.01 0.57 7.20 -2.38 -0.02 0.56 16 36 H 0.01 0.42 7.57 -2.39 -0.02 0.41 16 37 H 0.27 15.24 8.31 -92.71 -0.77 14.47 16 38 H 0.09 1.60 6.43 -2.38 -0.02 1.58 16 39 H 0.09 0.96 7.99 -2.39 -0.02 0.94 16 40 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 41 H 0.08 0.99 8.14 -2.39 -0.02 0.97 16 42 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 43 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 44 H 0.08 1.22 8.10 -2.38 -0.02 1.20 16 Total: -1.00 -67.19 349.11 0.71 -66.48 By element: Atomic # 1 Polarization: 25.52 SS G_CDS: -0.51 Total: 25.02 kcal Atomic # 6 Polarization: -9.80 SS G_CDS: 4.09 Total: -5.71 kcal Atomic # 7 Polarization: -100.81 SS G_CDS: -4.71 Total: -105.52 kcal Atomic # 8 Polarization: -26.75 SS G_CDS: -0.05 Total: -26.80 kcal Atomic # 14 Polarization: 44.64 SS G_CDS: 1.88 Total: 46.53 kcal Total: -67.19 0.71 -66.48 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000324954141.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.118 kcal (2) G-P(sol) polarization free energy of solvation -67.193 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.075 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.710 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.482 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.365 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds