Wall clock time and date at job start Mon Mar 30 2020 00:37:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52999 * 109.46954 * 2 1 4 4 C 1.52999 * 109.46864 * 120.00169 * 2 1 3 5 5 H 1.08999 * 110.00033 * 61.14140 * 4 2 1 6 6 C 1.54333 * 109.99188 * 300.10134 * 4 2 1 7 7 C 1.55154 * 103.02462 * 218.67074 * 6 4 2 8 8 C 1.54911 * 101.57932 * 35.30582 * 7 6 4 9 9 N 1.47027 * 109.87693 * 182.24137 * 4 2 1 10 10 C 1.37341 * 125.64811 * 298.38340 * 9 4 2 11 11 O 1.35098 * 119.99891 * 354.09802 * 10 9 4 12 12 N 1.30097 * 119.99793 * 174.08789 * 10 9 4 13 13 C 1.46503 * 119.99488 * 180.02562 * 12 10 9 14 14 C 1.53011 * 109.46830 * 115.00325 * 13 12 10 15 15 C 1.53002 * 109.46863 * 179.97438 * 14 13 12 16 16 C 1.50696 * 109.46751 * 179.97438 * 15 14 13 17 17 H 1.08001 * 120.00461 * 0.02562 * 16 15 14 18 18 C 1.37886 * 119.99718 * 179.72259 * 16 15 14 19 19 N 1.31510 * 119.99695 * 0.28284 * 18 16 15 20 20 Si 1.86796 * 120.00022 * 180.27999 * 18 16 15 21 21 H 1.48507 * 109.47058 * 359.97438 * 20 18 16 22 22 H 1.48500 * 109.47066 * 120.00095 * 20 18 16 23 23 H 1.48496 * 109.47008 * 240.00206 * 20 18 16 24 24 H 1.08997 * 109.47194 * 295.17801 * 1 2 3 25 25 H 1.09003 * 109.46811 * 55.18114 * 1 2 3 26 26 H 1.09001 * 109.46959 * 175.17623 * 1 2 3 27 27 H 1.09003 * 109.47017 * 239.99792 * 2 1 3 28 28 H 1.08992 * 109.46995 * 59.99813 * 3 2 1 29 29 H 1.09002 * 109.47018 * 180.02562 * 3 2 1 30 30 H 1.09007 * 109.47179 * 299.99657 * 3 2 1 31 31 H 1.09001 * 110.84865 * 100.19456 * 6 4 2 32 32 H 1.09009 * 110.66593 * 337.05263 * 6 4 2 33 33 H 1.08999 * 111.00359 * 277.23185 * 7 6 4 34 34 H 1.09004 * 111.03853 * 153.39426 * 7 6 4 35 35 H 1.09001 * 110.36508 * 204.15337 * 8 7 6 36 36 H 1.09002 * 110.45952 * 81.88203 * 8 7 6 37 37 H 0.96691 * 114.00109 * 4.44935 * 11 10 9 38 38 H 1.08995 * 109.47845 * 355.00232 * 13 12 10 39 39 H 1.09001 * 109.47240 * 234.99499 * 13 12 10 40 40 H 1.08996 * 109.47461 * 59.99604 * 14 13 12 41 41 H 1.09001 * 109.47018 * 299.99389 * 14 13 12 42 42 H 1.09004 * 109.46983 * 59.99998 * 15 14 13 43 43 H 1.08994 * 109.47313 * 300.00030 * 15 14 13 44 44 H 0.97006 * 119.99641 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 1 1.6981 -1.7563 1.2478 6 6 1.5300 -0.0046 2.5174 7 6 2.7454 -0.0873 3.4783 8 6 3.9317 0.0543 2.4922 9 7 3.5092 -0.6799 1.2856 10 6 4.3489 -1.2292 0.3479 11 8 3.8425 -1.9769 -0.6569 12 7 5.6320 -1.0295 0.4272 13 6 6.5277 -1.6150 -0.5734 14 6 7.1971 -0.4969 -1.3752 15 6 8.1329 -1.1084 -2.4198 16 6 8.7917 -0.0072 -3.2099 17 1 8.5659 1.0255 -2.9889 18 6 9.6876 -0.3180 -4.2109 19 7 9.9628 -1.5756 -4.4798 20 14 10.5101 1.0471 -5.1851 21 1 10.0332 2.3641 -4.6916 22 1 11.9827 0.9581 -5.0156 23 1 10.1679 0.9045 -6.6231 24 1 -0.3633 0.4372 0.9300 25 1 -0.3633 0.5868 -0.8437 26 1 -0.3633 -1.0240 -0.0864 27 1 1.8934 -0.5139 -0.8900 28 1 1.6766 1.9563 0.8899 29 1 3.1300 1.4425 -0.0005 30 1 1.6767 1.9563 -0.8901 31 1 0.6697 -0.5254 2.9378 32 1 1.2813 1.0339 2.2987 33 1 2.7747 -1.0497 3.9892 34 1 2.7335 0.7333 4.1957 35 1 4.8311 -0.3945 2.9139 36 1 4.1073 1.1037 2.2557 37 1 2.8764 -2.0129 -0.6719 38 1 5.9537 -2.2515 -1.2468 39 1 7.2913 -2.2107 -0.0733 40 1 7.7711 0.1396 -0.7019 41 1 6.4334 0.0988 -1.8754 42 1 7.5591 -1.7451 -3.0933 43 1 8.8964 -1.7039 -1.9194 44 1 10.5928 -1.7942 -5.1843 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000330590544.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:37:18 Heat of formation + Delta-G solvation = -37.624687 kcal Electronic energy + Delta-G solvation = -21038.182540 eV Core-core repulsion = 17990.254515 eV Total energy + Delta-G solvation = -3047.928025 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.41914 -37.94495 -35.18032 -34.63055 -33.03411 -31.86552 -30.31304 -28.35837 -27.38635 -26.44353 -24.03232 -22.60426 -22.13511 -20.24877 -20.10215 -19.58256 -17.94686 -16.61792 -16.23349 -15.72304 -15.19474 -14.64763 -14.38908 -14.29029 -13.98229 -13.77041 -13.64899 -13.16284 -12.82280 -12.48495 -12.33662 -12.27947 -12.07604 -11.85259 -11.62478 -11.46545 -11.37253 -11.18661 -10.94062 -10.80684 -10.70586 -10.64317 -10.45247 -9.76858 -9.56022 -9.26827 -8.94662 -8.81341 -8.23530 -7.58902 -5.88736 -3.90016 2.70831 3.02590 3.37998 3.44642 3.50120 3.95673 4.12791 4.30541 4.47860 4.55553 4.71358 4.78669 4.79637 5.01458 5.16481 5.18669 5.33702 5.38915 5.45695 5.46622 5.56171 5.58129 5.64541 5.72158 5.77130 5.83506 5.92878 5.95940 6.14274 6.18122 6.41120 6.45982 6.62626 6.85222 6.98931 7.17977 7.34829 7.82928 7.99656 8.07726 8.13668 8.55257 8.67359 9.17555 9.72945 11.22819 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.027902 B = 0.003506 C = 0.003396 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1003.281033 B = 7984.738419 C = 8242.183869 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.116 4.116 3 C -0.145 4.145 4 C 0.139 3.861 5 H 0.070 0.930 6 C -0.125 4.125 7 C -0.136 4.136 8 C 0.135 3.865 9 N -0.628 5.628 10 C 0.561 3.439 11 O -0.506 6.506 12 N -0.592 5.592 13 C 0.072 3.928 14 C -0.098 4.098 15 C 0.021 3.979 16 C -0.514 4.514 17 H 0.054 0.946 18 C 0.054 3.946 19 N -0.897 5.897 20 Si 0.891 3.109 21 H -0.273 1.273 22 H -0.284 1.284 23 H -0.285 1.285 24 H 0.059 0.941 25 H 0.059 0.941 26 H 0.055 0.945 27 H 0.070 0.930 28 H 0.057 0.943 29 H 0.062 0.938 30 H 0.054 0.946 31 H 0.079 0.921 32 H 0.084 0.916 33 H 0.074 0.926 34 H 0.083 0.917 35 H 0.080 0.920 36 H 0.062 0.938 37 H 0.384 0.616 38 H 0.043 0.957 39 H 0.065 0.935 40 H 0.050 0.950 41 H 0.039 0.961 42 H 0.014 0.986 43 H 0.016 0.984 44 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.101 2.433 15.640 28.004 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.135 4.135 3 C -0.203 4.203 4 C 0.035 3.965 5 H 0.088 0.912 6 C -0.163 4.163 7 C -0.174 4.174 8 C 0.013 3.987 9 N -0.360 5.360 10 C 0.250 3.750 11 O -0.299 6.299 12 N -0.339 5.339 13 C -0.057 4.057 14 C -0.136 4.136 15 C -0.016 4.016 16 C -0.553 4.553 17 H 0.073 0.927 18 C -0.146 4.146 19 N -0.537 5.537 20 Si 0.719 3.281 21 H -0.198 1.198 22 H -0.210 1.210 23 H -0.211 1.211 24 H 0.079 0.921 25 H 0.078 0.922 26 H 0.074 0.926 27 H 0.088 0.912 28 H 0.076 0.924 29 H 0.081 0.919 30 H 0.073 0.927 31 H 0.098 0.902 32 H 0.102 0.898 33 H 0.093 0.907 34 H 0.101 0.899 35 H 0.098 0.902 36 H 0.080 0.920 37 H 0.239 0.761 38 H 0.061 0.939 39 H 0.084 0.916 40 H 0.069 0.931 41 H 0.058 0.942 42 H 0.032 0.968 43 H 0.034 0.966 44 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -21.812 2.498 15.696 26.988 hybrid contribution -0.403 0.194 -1.306 1.381 sum -22.214 2.692 14.390 26.604 Atomic orbital electron populations 1.21829 0.94205 1.01959 1.02351 1.21649 0.96326 0.97958 0.97609 1.21830 1.02146 0.94773 1.01514 1.21637 0.79994 0.99028 0.95854 0.91246 1.22710 0.98075 1.01702 0.93827 1.22831 0.94495 1.02833 0.97289 1.21960 0.97392 0.96267 0.83131 1.46679 1.03584 1.60965 1.24750 1.20312 0.88078 0.85818 0.80806 1.85291 1.27277 1.68129 1.49220 1.72684 0.97075 1.32429 1.31737 1.21777 0.94296 0.97294 0.92344 1.21599 0.98248 0.96575 0.97211 1.19089 0.93696 0.96071 0.92762 1.21324 1.24042 0.93171 1.16729 0.92736 1.25036 0.96875 0.95363 0.97351 1.69989 1.35249 1.16750 1.31721 0.86550 0.79240 0.82470 0.79841 1.19770 1.21038 1.21103 0.92148 0.92220 0.92564 0.91219 0.92368 0.91864 0.92713 0.90203 0.89755 0.90743 0.89869 0.90201 0.91985 0.76150 0.93879 0.91643 0.93134 0.94191 0.96800 0.96584 0.93198 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.82 9.04 37.16 0.34 -0.48 16 2 C -0.12 -0.89 2.56 -90.62 -0.23 -1.12 16 3 C -0.15 -1.31 8.77 37.16 0.33 -0.99 16 4 C 0.14 1.08 2.21 -66.95 -0.15 0.93 16 5 H 0.07 0.48 8.03 -51.93 -0.42 0.07 16 6 C -0.13 -0.72 5.12 -24.89 -0.13 -0.85 16 7 C -0.14 -0.89 7.09 -24.58 -0.17 -1.07 16 8 C 0.13 1.37 6.89 -2.53 -0.02 1.36 16 9 N -0.63 -7.18 2.30 -165.58 -0.38 -7.56 16 10 C 0.56 8.82 8.46 -88.57 -0.75 8.07 16 11 O -0.51 -7.54 11.81 -17.00 -0.20 -7.74 16 12 N -0.59 -11.38 10.06 -62.52 -0.63 -12.00 16 13 C 0.07 1.56 6.33 -4.03 -0.03 1.53 16 14 C -0.10 -2.39 5.48 -26.72 -0.15 -2.53 16 15 C 0.02 0.61 4.97 -27.88 -0.14 0.47 16 16 C -0.51 -15.67 9.11 -34.44 -0.31 -15.99 16 17 H 0.05 1.63 7.74 -52.49 -0.41 1.22 16 18 C 0.05 1.64 5.46 -17.82 -0.10 1.55 16 19 N -0.90 -28.34 13.29 55.43 0.74 -27.60 16 20 Si 0.89 22.71 29.54 -169.99 -5.02 17.69 16 21 H -0.27 -6.82 7.11 56.52 0.40 -6.41 16 22 H -0.28 -7.12 7.11 56.52 0.40 -6.72 16 23 H -0.28 -7.13 7.11 56.52 0.40 -6.73 16 24 H 0.06 0.29 6.90 -51.93 -0.36 -0.07 16 25 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 26 H 0.06 0.27 8.14 -51.93 -0.42 -0.15 16 27 H 0.07 0.61 6.18 -51.93 -0.32 0.29 16 28 H 0.06 0.44 6.10 -51.93 -0.32 0.12 16 29 H 0.06 0.76 7.56 -51.93 -0.39 0.37 16 30 H 0.05 0.49 8.14 -51.93 -0.42 0.06 16 31 H 0.08 0.34 8.14 -51.93 -0.42 -0.08 16 32 H 0.08 0.46 5.50 -51.92 -0.29 0.18 16 33 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 34 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 35 H 0.08 0.94 8.09 -51.93 -0.42 0.52 16 36 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 37 H 0.38 3.87 5.88 45.56 0.27 4.14 16 38 H 0.04 0.94 6.74 -51.93 -0.35 0.59 16 39 H 0.07 1.41 8.14 -51.93 -0.42 0.99 16 40 H 0.05 1.24 8.14 -51.93 -0.42 0.81 16 41 H 0.04 0.98 8.14 -51.93 -0.42 0.56 16 42 H 0.01 0.41 8.14 -51.93 -0.42 -0.01 16 43 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 44 H 0.26 7.63 8.31 -40.82 -0.34 7.30 16 LS Contribution 344.55 15.07 5.19 5.19 Total: -1.00 -34.81 344.55 -9.02 -43.83 By element: Atomic # 1 Polarization: 4.52 SS G_CDS: -7.21 Total: -2.69 kcal Atomic # 6 Polarization: -7.61 SS G_CDS: -1.51 Total: -9.12 kcal Atomic # 7 Polarization: -46.89 SS G_CDS: -0.27 Total: -47.16 kcal Atomic # 8 Polarization: -7.54 SS G_CDS: -0.20 Total: -7.74 kcal Atomic # 14 Polarization: 22.71 SS G_CDS: -5.02 Total: 17.69 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -34.81 -9.02 -43.83 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330590544.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.205 kcal (2) G-P(sol) polarization free energy of solvation -34.810 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.605 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.019 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.830 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.625 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds