Wall clock time and date at job start Mon Mar 30 2020 00:37:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52999 * 109.46954 * 2 1 4 4 C 1.52999 * 109.46864 * 120.00169 * 2 1 3 5 5 H 1.08999 * 110.00033 * 61.14140 * 4 2 1 6 6 C 1.54333 * 109.99188 * 300.10134 * 4 2 1 7 7 C 1.55154 * 103.02462 * 218.67074 * 6 4 2 8 8 C 1.54911 * 101.57932 * 35.30582 * 7 6 4 9 9 N 1.47027 * 109.87693 * 182.24137 * 4 2 1 10 10 C 1.37341 * 125.64811 * 298.38340 * 9 4 2 11 11 O 1.35098 * 119.99891 * 354.09802 * 10 9 4 12 12 N 1.30097 * 119.99793 * 174.08789 * 10 9 4 13 13 C 1.46503 * 119.99488 * 180.02562 * 12 10 9 14 14 C 1.53011 * 109.46830 * 115.00325 * 13 12 10 15 15 C 1.53002 * 109.46863 * 179.97438 * 14 13 12 16 16 C 1.50696 * 109.46751 * 179.97438 * 15 14 13 17 17 H 1.08001 * 120.00461 * 0.02562 * 16 15 14 18 18 C 1.37886 * 119.99718 * 179.72259 * 16 15 14 19 19 N 1.31510 * 119.99695 * 0.28284 * 18 16 15 20 20 Si 1.86796 * 120.00022 * 180.27999 * 18 16 15 21 21 H 1.48507 * 109.47058 * 359.97438 * 20 18 16 22 22 H 1.48500 * 109.47066 * 120.00095 * 20 18 16 23 23 H 1.48496 * 109.47008 * 240.00206 * 20 18 16 24 24 H 1.08997 * 109.47194 * 295.17801 * 1 2 3 25 25 H 1.09003 * 109.46811 * 55.18114 * 1 2 3 26 26 H 1.09001 * 109.46959 * 175.17623 * 1 2 3 27 27 H 1.09003 * 109.47017 * 239.99792 * 2 1 3 28 28 H 1.08992 * 109.46995 * 59.99813 * 3 2 1 29 29 H 1.09002 * 109.47018 * 180.02562 * 3 2 1 30 30 H 1.09007 * 109.47179 * 299.99657 * 3 2 1 31 31 H 1.09001 * 110.84865 * 100.19456 * 6 4 2 32 32 H 1.09009 * 110.66593 * 337.05263 * 6 4 2 33 33 H 1.08999 * 111.00359 * 277.23185 * 7 6 4 34 34 H 1.09004 * 111.03853 * 153.39426 * 7 6 4 35 35 H 1.09001 * 110.36508 * 204.15337 * 8 7 6 36 36 H 1.09002 * 110.45952 * 81.88203 * 8 7 6 37 37 H 0.96691 * 114.00109 * 4.44935 * 11 10 9 38 38 H 1.08995 * 109.47845 * 355.00232 * 13 12 10 39 39 H 1.09001 * 109.47240 * 234.99499 * 13 12 10 40 40 H 1.08996 * 109.47461 * 59.99604 * 14 13 12 41 41 H 1.09001 * 109.47018 * 299.99389 * 14 13 12 42 42 H 1.09004 * 109.46983 * 59.99998 * 15 14 13 43 43 H 1.08994 * 109.47313 * 300.00030 * 15 14 13 44 44 H 0.97006 * 119.99641 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 1 1.6981 -1.7563 1.2478 6 6 1.5300 -0.0046 2.5174 7 6 2.7454 -0.0873 3.4783 8 6 3.9317 0.0543 2.4922 9 7 3.5092 -0.6799 1.2856 10 6 4.3489 -1.2292 0.3479 11 8 3.8425 -1.9769 -0.6569 12 7 5.6320 -1.0295 0.4272 13 6 6.5277 -1.6150 -0.5734 14 6 7.1971 -0.4969 -1.3752 15 6 8.1329 -1.1084 -2.4198 16 6 8.7917 -0.0072 -3.2099 17 1 8.5659 1.0255 -2.9889 18 6 9.6876 -0.3180 -4.2109 19 7 9.9628 -1.5756 -4.4798 20 14 10.5101 1.0471 -5.1851 21 1 10.0332 2.3641 -4.6916 22 1 11.9827 0.9581 -5.0156 23 1 10.1679 0.9045 -6.6231 24 1 -0.3633 0.4372 0.9300 25 1 -0.3633 0.5868 -0.8437 26 1 -0.3633 -1.0240 -0.0864 27 1 1.8934 -0.5139 -0.8900 28 1 1.6766 1.9563 0.8899 29 1 3.1300 1.4425 -0.0005 30 1 1.6767 1.9563 -0.8901 31 1 0.6697 -0.5254 2.9378 32 1 1.2813 1.0339 2.2987 33 1 2.7747 -1.0497 3.9892 34 1 2.7335 0.7333 4.1957 35 1 4.8311 -0.3945 2.9139 36 1 4.1073 1.1037 2.2557 37 1 2.8764 -2.0129 -0.6719 38 1 5.9537 -2.2515 -1.2468 39 1 7.2913 -2.2107 -0.0733 40 1 7.7711 0.1396 -0.7019 41 1 6.4334 0.0988 -1.8754 42 1 7.5591 -1.7451 -3.0933 43 1 8.8964 -1.7039 -1.9194 44 1 10.5928 -1.7942 -5.1843 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000330590544.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:37:17 Heat of formation + Delta-G solvation = -62.164562 kcal Electronic energy + Delta-G solvation = -21039.246669 eV Core-core repulsion = 17990.254515 eV Total energy + Delta-G solvation = -3048.992154 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.33895 -39.01162 -36.74344 -35.73254 -34.85580 -33.25784 -31.81690 -29.09936 -28.38610 -27.91184 -25.51771 -23.90088 -22.96860 -21.99311 -21.32597 -20.67337 -18.83880 -18.48301 -17.41403 -16.90760 -16.49069 -16.31920 -15.65602 -15.56779 -15.27514 -14.65183 -14.45046 -14.35532 -13.99691 -13.91891 -13.68201 -13.36236 -13.04022 -12.93758 -12.79148 -12.75441 -12.72019 -12.43542 -12.21153 -12.03595 -11.86477 -11.73934 -11.51213 -11.49142 -11.30077 -11.23694 -10.73304 -10.58868 -10.35689 -8.82239 -8.21826 -6.34373 1.37080 1.38927 1.52691 1.65567 1.77307 2.39703 2.92684 3.09696 3.50357 3.66749 3.86295 3.98690 4.12780 4.15705 4.24109 4.31221 4.43353 4.53730 4.57245 4.61231 4.74142 4.81581 4.92775 4.93499 4.96387 5.01592 5.03009 5.08661 5.12991 5.16389 5.19889 5.24757 5.30350 5.42821 5.47366 5.47456 5.65091 5.69700 5.80776 5.88772 6.22419 6.80639 6.95024 7.32857 7.34759 8.90350 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.027902 B = 0.003506 C = 0.003396 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1003.281033 B = 7984.738419 C = 8242.183869 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.113 4.113 3 C -0.143 4.143 4 C 0.131 3.869 5 H 0.087 0.913 6 C -0.117 4.117 7 C -0.123 4.123 8 C 0.125 3.875 9 N -0.620 5.620 10 C 0.574 3.426 11 O -0.518 6.518 12 N -0.634 5.634 13 C 0.088 3.912 14 C -0.080 4.080 15 C 0.028 3.972 16 C -0.545 4.545 17 H 0.055 0.945 18 C -0.002 4.002 19 N -0.933 5.933 20 Si 0.972 3.028 21 H -0.264 1.264 22 H -0.273 1.273 23 H -0.274 1.274 24 H 0.076 0.924 25 H 0.056 0.944 26 H 0.067 0.933 27 H 0.054 0.946 28 H 0.076 0.924 29 H 0.026 0.974 30 H 0.051 0.949 31 H 0.108 0.892 32 H 0.091 0.909 33 H 0.079 0.921 34 H 0.103 0.897 35 H 0.059 0.941 36 H 0.055 0.945 37 H 0.405 0.595 38 H 0.032 0.968 39 H 0.057 0.943 40 H 0.045 0.955 41 H 0.032 0.968 42 H -0.011 1.011 43 H -0.007 1.007 44 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.420 3.559 16.558 30.545 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.133 4.133 3 C -0.201 4.201 4 C 0.029 3.971 5 H 0.105 0.895 6 C -0.154 4.154 7 C -0.161 4.161 8 C 0.003 3.997 9 N -0.351 5.351 10 C 0.263 3.737 11 O -0.314 6.314 12 N -0.385 5.385 13 C -0.042 4.042 14 C -0.118 4.118 15 C -0.009 4.009 16 C -0.583 4.583 17 H 0.074 0.926 18 C -0.199 4.199 19 N -0.573 5.573 20 Si 0.795 3.205 21 H -0.188 1.188 22 H -0.199 1.199 23 H -0.199 1.199 24 H 0.095 0.905 25 H 0.075 0.925 26 H 0.086 0.914 27 H 0.072 0.928 28 H 0.095 0.905 29 H 0.045 0.955 30 H 0.070 0.930 31 H 0.126 0.874 32 H 0.109 0.891 33 H 0.098 0.902 34 H 0.122 0.878 35 H 0.077 0.923 36 H 0.073 0.927 37 H 0.262 0.738 38 H 0.051 0.949 39 H 0.075 0.925 40 H 0.064 0.936 41 H 0.051 0.949 42 H 0.008 0.992 43 H 0.012 0.988 44 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -24.213 3.627 16.644 29.605 hybrid contribution 0.185 -0.183 -1.563 1.585 sum -24.028 3.444 15.080 28.577 Atomic orbital electron populations 1.21785 0.91919 1.02879 1.03115 1.21623 0.98090 0.96680 0.96909 1.21811 0.99725 0.96148 1.02386 1.22015 0.77379 1.00519 0.97207 0.89527 1.22760 0.98371 1.02201 0.92107 1.22793 0.92669 1.03975 0.96708 1.22133 0.98661 0.95409 0.83517 1.46977 1.05016 1.59333 1.23777 1.20452 0.87969 0.84467 0.80799 1.85240 1.29368 1.67734 1.49049 1.72648 0.98594 1.35368 1.31882 1.21378 0.94635 0.95770 0.92398 1.21334 0.97162 0.97104 0.96202 1.18963 0.93493 0.95375 0.93107 1.21674 1.25215 0.93537 1.17914 0.92628 1.26053 0.97229 0.98360 0.98289 1.70119 1.35717 1.19152 1.32345 0.85309 0.78176 0.78882 0.78121 1.18795 1.19875 1.19927 0.90536 0.92530 0.91404 0.92781 0.90483 0.95457 0.92959 0.87367 0.89094 0.90246 0.87837 0.92275 0.92651 0.73784 0.94933 0.92503 0.93639 0.94939 0.99243 0.98813 0.92598 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.11 9.04 71.98 0.65 -0.46 16 2 C -0.11 -1.52 2.56 -10.79 -0.03 -1.55 16 3 C -0.14 -2.44 8.77 71.98 0.63 -1.81 16 4 C 0.13 1.70 2.21 45.34 0.10 1.80 16 5 H 0.09 0.90 8.03 -2.39 -0.02 0.88 16 6 C -0.12 -0.88 5.12 31.78 0.16 -0.72 16 7 C -0.12 -1.25 7.09 31.99 0.23 -1.02 16 8 C 0.12 2.46 6.89 86.86 0.60 3.06 16 9 N -0.62 -13.70 2.30 -788.24 -1.82 -15.52 16 10 C 0.57 18.29 8.46 179.63 1.52 19.81 16 11 O -0.52 -15.51 11.81 -83.73 -0.99 -16.50 16 12 N -0.63 -25.32 10.06 -465.96 -4.69 -30.01 16 13 C 0.09 4.02 6.33 86.38 0.55 4.57 16 14 C -0.08 -4.07 5.48 30.60 0.17 -3.90 16 15 C 0.03 1.69 4.97 29.85 0.15 1.84 16 16 C -0.55 -34.17 9.11 25.60 0.23 -33.94 16 17 H 0.06 3.38 7.74 -2.91 -0.02 3.36 16 18 C 0.00 -0.11 5.46 84.66 0.46 0.35 16 19 N -0.93 -60.02 13.29 21.45 0.28 -59.73 16 20 Si 0.97 46.86 29.54 68.60 2.03 48.89 16 21 H -0.26 -12.24 7.11 99.48 0.71 -11.53 16 22 H -0.27 -12.66 7.11 99.48 0.71 -11.96 16 23 H -0.27 -12.68 7.11 99.48 0.71 -11.97 16 24 H 0.08 0.39 6.90 -2.39 -0.02 0.38 16 25 H 0.06 0.52 8.14 -2.39 -0.02 0.50 16 26 H 0.07 0.42 8.14 -2.39 -0.02 0.40 16 27 H 0.05 0.89 6.18 -2.39 -0.01 0.88 16 28 H 0.08 0.99 6.10 -2.39 -0.01 0.97 16 29 H 0.03 0.65 7.56 -2.39 -0.02 0.63 16 30 H 0.05 0.90 8.14 -2.38 -0.02 0.88 16 31 H 0.11 0.33 8.14 -2.39 -0.02 0.31 16 32 H 0.09 0.61 5.50 -2.38 -0.01 0.60 16 33 H 0.08 0.78 8.14 -2.39 -0.02 0.76 16 34 H 0.10 0.69 8.14 -2.39 -0.02 0.68 16 35 H 0.06 1.41 8.09 -2.39 -0.02 1.40 16 36 H 0.06 1.16 8.14 -2.39 -0.02 1.15 16 37 H 0.40 7.82 5.88 -74.06 -0.44 7.38 16 38 H 0.03 1.50 6.74 -2.39 -0.02 1.48 16 39 H 0.06 2.60 8.14 -2.39 -0.02 2.58 16 40 H 0.04 2.33 8.14 -2.39 -0.02 2.31 16 41 H 0.03 1.66 8.14 -2.39 -0.02 1.64 16 42 H -0.01 -0.69 8.14 -2.38 -0.02 -0.71 16 43 H -0.01 -0.41 8.14 -2.39 -0.02 -0.43 16 44 H 0.27 15.79 8.31 -92.70 -0.77 15.02 16 Total: -1.00 -78.05 344.55 0.77 -77.28 By element: Atomic # 1 Polarization: 7.04 SS G_CDS: 0.53 Total: 7.57 kcal Atomic # 6 Polarization: -17.39 SS G_CDS: 5.42 Total: -11.97 kcal Atomic # 7 Polarization: -99.05 SS G_CDS: -6.22 Total: -105.27 kcal Atomic # 8 Polarization: -15.51 SS G_CDS: -0.99 Total: -16.50 kcal Atomic # 14 Polarization: 46.86 SS G_CDS: 2.03 Total: 48.89 kcal Total: -78.05 0.77 -77.28 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330590544.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.118 kcal (2) G-P(sol) polarization free energy of solvation -78.048 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.930 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.766 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.283 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.165 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds