Wall clock time and date at job start Mon Mar 30 2020 00:29:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53002 * 109.47026 * 2 1 4 4 C 1.53006 * 109.47342 * 119.99463 * 2 1 3 5 5 C 1.50702 * 109.46847 * 64.99992 * 4 2 1 6 6 O 1.21282 * 119.99970 * 0.02562 * 5 4 2 7 7 N 1.34774 * 120.00101 * 180.02562 * 5 4 2 8 8 C 1.46494 * 120.00169 * 180.02562 * 7 5 4 9 9 C 1.52996 * 109.47280 * 179.97438 * 8 7 5 10 10 C 1.53349 * 109.42091 * 295.12817 * 9 8 7 11 11 C 1.53196 * 109.15353 * 178.67328 * 10 9 8 12 12 N 1.46928 * 108.89135 * 54.57497 * 11 10 9 13 13 C 1.36936 * 120.63013 * 126.29699 * 12 11 10 14 14 H 1.07999 * 120.00022 * 331.83633 * 13 12 11 15 15 C 1.38813 * 120.00005 * 151.82709 * 13 12 11 16 16 N 1.31618 * 120.00004 * 343.09585 * 15 13 12 17 17 Si 1.86806 * 119.99953 * 163.09475 * 15 13 12 18 18 H 1.48494 * 109.47083 * 60.00061 * 17 15 13 19 19 H 1.48500 * 109.46851 * 180.02562 * 17 15 13 20 20 H 1.48503 * 109.47024 * 300.00112 * 17 15 13 21 21 C 1.46924 * 118.73859 * 306.32337 * 12 11 10 22 22 C 1.53044 * 109.46279 * 174.99967 * 9 8 7 23 23 H 1.08997 * 109.46645 * 180.02562 * 1 2 3 24 24 H 1.08997 * 109.47492 * 300.00377 * 1 2 3 25 25 H 1.08997 * 109.46822 * 60.00908 * 1 2 3 26 26 H 1.08997 * 109.47492 * 239.99623 * 2 1 3 27 27 H 1.09000 * 109.47399 * 179.97438 * 3 2 1 28 28 H 1.09004 * 109.46946 * 299.99232 * 3 2 1 29 29 H 1.08997 * 109.47293 * 59.99501 * 3 2 1 30 30 H 1.09000 * 109.46810 * 305.00788 * 4 2 1 31 31 H 1.08997 * 109.47247 * 185.00024 * 4 2 1 32 32 H 0.96999 * 119.99862 * 0.02562 * 7 5 4 33 33 H 1.08996 * 109.47191 * 59.99822 * 8 7 5 34 34 H 1.08998 * 109.47122 * 300.00127 * 8 7 5 35 35 H 1.09003 * 109.46065 * 55.02896 * 9 8 7 36 36 H 1.08998 * 109.68701 * 58.70817 * 10 9 8 37 37 H 1.09000 * 109.47234 * 298.50885 * 10 9 8 38 38 H 1.08996 * 109.58345 * 294.72319 * 11 10 9 39 39 H 1.08994 * 109.58644 * 174.43734 * 11 10 9 40 40 H 0.96996 * 119.99787 * 179.97438 * 16 15 13 41 41 H 1.09000 * 109.58664 * 173.39523 * 21 12 11 42 42 H 1.08996 * 109.58580 * 293.67452 * 21 12 11 43 43 H 1.08992 * 109.49619 * 61.43154 * 22 9 8 44 44 H 1.08999 * 109.52313 * 301.35168 * 22 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7212 1.2493 5 6 1.6414 -2.1732 1.1891 6 8 1.0117 -2.5903 0.2401 7 7 1.9845 -3.0084 2.1897 8 6 1.5974 -4.4200 2.1308 9 6 2.1073 -5.1412 3.3801 10 6 3.6408 -5.1372 3.3810 11 6 4.1445 -5.8313 4.6504 12 7 3.5429 -7.1693 4.7317 13 6 4.3295 -8.2801 4.8811 14 1 5.3406 -8.2808 4.5016 15 6 3.8275 -9.4052 5.5207 16 7 2.7475 -9.3109 6.2671 17 14 4.6847 -11.0530 5.3221 18 1 6.0793 -10.9488 5.8215 19 1 3.9558 -12.0870 6.0998 20 1 4.7000 -11.4332 3.8867 21 6 2.0812 -7.2928 4.6489 22 6 1.5975 -6.5842 3.3797 23 1 -0.3632 -1.0277 0.0005 24 1 -0.3634 0.5139 0.8899 25 1 -0.3633 0.5137 -0.8901 26 1 1.8934 -0.5139 -0.8899 27 1 3.1300 1.4426 0.0005 28 1 1.6767 1.9563 -0.8901 29 1 1.6766 1.9564 0.8899 30 1 1.6053 -0.2616 2.1370 31 1 3.1263 -0.6442 1.2952 32 1 2.4877 -2.6747 2.9488 33 1 2.0327 -4.8794 1.2435 34 1 0.5112 -4.4973 2.0842 35 1 1.7431 -4.6277 4.2700 36 1 4.0053 -4.1102 3.3589 37 1 4.0060 -5.6724 2.5044 38 1 3.8567 -5.2476 5.5247 39 1 5.2301 -5.9205 4.6118 40 1 2.3965 -10.0972 6.7136 41 1 1.8053 -8.3464 4.6068 42 1 1.6253 -6.8305 5.5244 43 1 1.9818 -7.1055 2.5031 44 1 0.5078 -6.5856 3.3551 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000330901435.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:29:41 Heat of formation + Delta-G solvation = -48.111590 kcal Electronic energy + Delta-G solvation = -20834.755311 eV Core-core repulsion = 17786.372540 eV Total energy + Delta-G solvation = -3048.382771 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -39.92366 -37.90572 -35.86715 -34.80157 -32.86014 -30.87326 -29.79875 -28.65106 -27.27495 -26.38034 -23.92202 -22.27210 -21.27954 -20.77519 -19.93914 -19.07943 -17.17675 -16.66654 -16.00779 -15.59884 -14.88222 -14.81692 -14.17559 -13.99468 -13.70197 -13.62555 -13.49528 -13.17033 -12.56534 -12.47038 -12.33119 -12.26617 -12.10291 -11.80451 -11.36333 -11.26665 -11.04668 -10.98159 -10.87238 -10.71908 -10.51215 -10.25696 -10.22359 -9.95365 -9.74491 -9.54413 -9.41047 -8.93814 -8.46675 -6.67155 -5.79216 -3.21735 2.67475 3.26120 3.38284 3.44100 3.45545 4.49558 4.55323 4.67798 4.72208 5.06626 5.17632 5.22650 5.29311 5.36992 5.38218 5.41213 5.44762 5.49938 5.60773 5.69942 5.77856 5.86887 5.91681 5.96428 6.05037 6.14651 6.17106 6.27951 6.31869 6.44148 6.51291 6.59989 6.69454 6.76229 6.80992 6.97445 7.36667 7.56147 7.65630 7.79036 8.27607 8.45341 9.21435 9.84940 10.41692 11.29345 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.051898 B = 0.003158 C = 0.003096 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 539.389122 B = 8865.435312 C = 9041.721707 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.081 4.081 3 C -0.148 4.148 4 C -0.139 4.139 5 C 0.508 3.492 6 O -0.543 6.543 7 N -0.727 5.727 8 C 0.123 3.877 9 C -0.090 4.090 10 C -0.127 4.127 11 C 0.145 3.855 12 N -0.592 5.592 13 C -0.253 4.253 14 H 0.064 0.936 15 C 0.002 3.998 16 N -0.904 5.904 17 Si 0.902 3.098 18 H -0.283 1.283 19 H -0.290 1.290 20 H -0.284 1.284 21 C 0.172 3.828 22 C -0.133 4.133 23 H 0.075 0.925 24 H 0.046 0.954 25 H 0.050 0.950 26 H 0.077 0.923 27 H 0.054 0.946 28 H 0.056 0.944 29 H 0.054 0.946 30 H 0.091 0.909 31 H 0.092 0.908 32 H 0.400 0.600 33 H 0.064 0.936 34 H 0.062 0.938 35 H 0.068 0.932 36 H 0.047 0.953 37 H 0.059 0.941 38 H 0.016 0.984 39 H 0.052 0.948 40 H 0.254 0.746 41 H 0.087 0.913 42 H 0.017 0.983 43 H 0.057 0.943 44 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.146 17.974 -8.249 19.892 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.100 4.100 3 C -0.205 4.205 4 C -0.179 4.179 5 C 0.295 3.705 6 O -0.421 6.421 7 N -0.378 5.378 8 C 0.000 4.000 9 C -0.109 4.109 10 C -0.166 4.166 11 C 0.019 3.981 12 N -0.315 5.315 13 C -0.383 4.383 14 H 0.082 0.918 15 C -0.196 4.196 16 N -0.548 5.548 17 Si 0.732 3.268 18 H -0.209 1.209 19 H -0.216 1.216 20 H -0.210 1.210 21 C 0.046 3.954 22 C -0.173 4.173 23 H 0.094 0.906 24 H 0.066 0.934 25 H 0.069 0.931 26 H 0.095 0.905 27 H 0.073 0.927 28 H 0.075 0.925 29 H 0.073 0.927 30 H 0.110 0.890 31 H 0.110 0.890 32 H 0.234 0.766 33 H 0.083 0.917 34 H 0.081 0.919 35 H 0.086 0.914 36 H 0.066 0.934 37 H 0.078 0.922 38 H 0.034 0.966 39 H 0.071 0.929 40 H 0.064 0.936 41 H 0.106 0.894 42 H 0.036 0.964 43 H 0.076 0.924 44 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -2.675 17.510 -8.815 19.786 hybrid contribution 0.666 -0.721 0.407 1.063 sum -2.009 16.789 -8.408 18.884 Atomic orbital electron populations 1.21959 0.94785 1.03462 1.00863 1.20853 0.96632 0.95203 0.97282 1.21868 1.00863 0.95905 1.01890 1.21790 1.02830 0.92396 1.00848 1.20708 0.79283 0.88297 0.82245 1.90659 1.40002 1.78119 1.33292 1.46165 1.57705 1.10404 1.23568 1.21555 0.99589 0.79569 0.99326 1.21362 0.96522 0.97148 0.95853 1.22127 0.94490 0.98961 1.01040 1.20884 0.96568 0.87388 0.93291 1.44037 1.02048 1.00747 1.84685 1.19142 0.97244 0.91324 1.30589 0.91810 1.25044 0.98420 0.99369 0.96799 1.70018 1.24578 1.28664 1.31535 0.86372 0.78926 0.83793 0.77697 1.20894 1.21622 1.21022 1.20759 0.83277 1.00470 0.90910 1.22172 0.98756 0.94008 1.02323 0.90622 0.93444 0.93075 0.90474 0.92697 0.92475 0.92685 0.89042 0.89010 0.76587 0.91750 0.91946 0.91377 0.93450 0.92224 0.96637 0.92933 0.93575 0.89446 0.96446 0.92420 0.93087 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.51 8.93 37.16 0.33 -1.18 16 2 C -0.08 -0.74 2.57 -90.62 -0.23 -0.97 16 3 C -0.15 -1.03 9.19 37.16 0.34 -0.68 16 4 C -0.14 -1.20 5.18 -27.88 -0.14 -1.35 16 5 C 0.51 6.32 7.55 -10.99 -0.08 6.24 16 6 O -0.54 -8.76 13.97 5.56 0.08 -8.68 16 7 N -0.73 -8.62 5.27 -60.30 -0.32 -8.94 16 8 C 0.12 1.74 5.07 -4.05 -0.02 1.72 16 9 C -0.09 -1.41 2.19 -90.42 -0.20 -1.60 16 10 C -0.13 -2.06 5.27 -26.45 -0.14 -2.20 16 11 C 0.15 2.94 6.51 -3.71 -0.02 2.92 16 12 N -0.59 -14.64 2.99 -172.32 -0.52 -15.16 16 13 C -0.25 -6.93 9.58 -15.06 -0.14 -7.07 16 14 H 0.06 1.71 7.88 -52.49 -0.41 1.30 16 15 C 0.00 0.06 4.92 -17.43 -0.09 -0.02 16 16 N -0.90 -26.14 11.20 55.49 0.62 -25.51 16 17 Si 0.90 21.66 29.59 -169.99 -5.03 16.63 16 18 H -0.28 -6.70 7.11 56.52 0.40 -6.29 16 19 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 20 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 21 C 0.17 4.02 5.30 -3.71 -0.02 4.00 16 22 C -0.13 -2.46 5.36 -26.61 -0.14 -2.60 16 23 H 0.07 0.94 5.95 -51.93 -0.31 0.63 16 24 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 25 H 0.05 0.46 8.14 -51.93 -0.42 0.03 16 26 H 0.08 0.82 7.95 -51.93 -0.41 0.40 16 27 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 28 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 29 H 0.05 0.35 8.14 -51.93 -0.42 -0.08 16 30 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 31 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 32 H 0.40 3.86 7.65 -40.82 -0.31 3.55 16 33 H 0.06 1.00 8.14 -51.93 -0.42 0.57 16 34 H 0.06 0.92 8.14 -51.93 -0.42 0.49 16 35 H 0.07 1.06 8.14 -51.93 -0.42 0.63 16 36 H 0.05 0.63 7.16 -51.93 -0.37 0.26 16 37 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 38 H 0.02 0.32 8.14 -51.93 -0.42 -0.11 16 39 H 0.05 1.05 7.93 -51.93 -0.41 0.64 16 40 H 0.25 7.13 8.31 -40.82 -0.34 6.79 16 41 H 0.09 2.31 6.06 -51.93 -0.31 2.00 16 42 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 43 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 44 H 0.05 0.86 8.14 -51.93 -0.42 0.43 16 LS Contribution 342.99 15.07 5.17 5.17 Total: -1.00 -30.80 342.99 -8.58 -39.38 By element: Atomic # 1 Polarization: 7.95 SS G_CDS: -8.02 Total: -0.07 kcal Atomic # 6 Polarization: -2.25 SS G_CDS: -0.56 Total: -2.81 kcal Atomic # 7 Polarization: -49.40 SS G_CDS: -0.21 Total: -49.62 kcal Atomic # 8 Polarization: -8.76 SS G_CDS: 0.08 Total: -8.68 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -5.03 Total: 16.63 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -30.80 -8.58 -39.38 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330901435.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.732 kcal (2) G-P(sol) polarization free energy of solvation -30.800 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.532 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.580 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.380 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.112 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds