Wall clock time and date at job start Mon Mar 30 2020 00:52:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53006 * 109.47039 * 2 1 4 4 C 1.53001 * 109.46787 * 119.99544 * 2 1 3 5 5 H 1.08990 * 109.47369 * 305.42281 * 4 2 1 6 6 C 1.50706 * 109.46690 * 65.42666 * 4 2 1 7 7 O 1.21280 * 119.99750 * 113.40430 * 6 4 2 8 8 N 1.34777 * 119.99958 * 293.39528 * 6 4 2 9 9 C 1.46490 * 119.99916 * 175.95459 * 8 6 4 10 10 C 1.50705 * 109.47150 * 180.02562 * 9 8 6 11 11 H 1.07995 * 119.99699 * 359.97438 * 10 9 8 12 12 C 1.37873 * 119.99908 * 180.02562 * 10 9 8 13 13 N 1.31515 * 120.00607 * 359.97438 * 12 10 9 14 14 Si 1.86805 * 119.99869 * 180.02562 * 12 10 9 15 15 H 1.48502 * 109.47109 * 359.97438 * 14 12 10 16 16 H 1.48498 * 109.47524 * 119.99819 * 14 12 10 17 17 H 1.48498 * 109.47117 * 239.99578 * 14 12 10 18 18 N 1.46899 * 109.46914 * 185.42069 * 4 2 1 19 19 C 1.46850 * 111.00363 * 299.21066 * 18 4 2 20 20 C 1.53038 * 109.52426 * 174.16019 * 19 18 4 21 21 C 1.53121 * 109.27684 * 59.17994 * 20 19 18 22 22 C 1.53115 * 109.16178 * 302.34380 * 21 20 19 23 23 C 1.46846 * 111.00034 * 175.00317 * 18 4 2 24 24 H 1.09003 * 109.46732 * 56.70671 * 1 2 3 25 25 H 1.09002 * 109.47329 * 296.70349 * 1 2 3 26 26 H 1.08998 * 109.46817 * 176.69863 * 1 2 3 27 27 H 1.09003 * 109.47358 * 240.00001 * 2 1 3 28 28 H 1.08993 * 109.46981 * 59.99862 * 3 2 1 29 29 H 1.08996 * 109.46822 * 179.97438 * 3 2 1 30 30 H 1.09002 * 109.46791 * 299.99480 * 3 2 1 31 31 H 0.97002 * 119.99926 * 355.95927 * 8 6 4 32 32 H 1.09004 * 109.47523 * 299.99843 * 9 8 6 33 33 H 1.09005 * 109.47613 * 60.00391 * 9 8 6 34 34 H 0.97000 * 120.00256 * 179.97438 * 13 12 10 35 35 H 1.08995 * 109.46239 * 294.17772 * 19 18 4 36 36 H 1.09003 * 109.45899 * 54.14904 * 19 18 4 37 37 H 1.09008 * 109.50020 * 299.24323 * 20 19 18 38 38 H 1.08994 * 109.53761 * 179.14363 * 20 19 18 39 39 H 1.09002 * 109.52177 * 182.43973 * 21 20 19 40 40 H 1.08998 * 109.57297 * 62.28521 * 21 20 19 41 41 H 1.08997 * 109.50942 * 297.71338 * 22 21 20 42 42 H 1.08998 * 109.53503 * 177.61490 * 22 21 20 43 43 H 1.09003 * 109.46087 * 305.85768 * 23 18 4 44 44 H 1.09007 * 109.46443 * 65.83349 * 23 18 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0399 -0.7212 1.2493 5 1 1.5995 -0.2665 2.1365 6 6 1.6502 -2.1755 1.1840 7 8 2.5055 -3.0280 1.0720 8 7 0.3512 -2.5287 1.2502 9 6 -0.0345 -3.9337 1.0978 10 6 -1.5321 -4.0586 1.2108 11 1 -2.1360 -3.1793 1.3797 12 6 -2.1310 -5.2954 1.0996 13 7 -1.3955 -6.3662 0.8944 14 14 -3.9874 -5.4502 1.2390 15 1 -4.5802 -4.1079 1.4673 16 1 -4.5320 -6.0252 -0.0171 17 1 -4.3257 -6.3405 2.3783 18 7 3.5031 -0.6089 1.3166 19 6 4.1330 -1.2290 0.1439 20 6 5.6404 -0.9667 0.1744 21 6 6.2291 -1.5506 1.4618 22 6 5.5225 -0.9238 2.6669 23 6 4.0185 -1.1873 2.5640 24 1 -0.3633 0.5641 -0.8590 25 1 -0.3634 0.4618 0.9181 26 1 -0.3633 -1.0260 -0.0592 27 1 1.8934 -0.5138 -0.8900 28 1 1.6767 1.9563 0.8899 29 1 3.1300 1.4425 0.0005 30 1 1.6767 1.9563 -0.8901 31 1 -0.3283 -1.8525 1.3987 32 1 0.2871 -4.2949 0.1209 33 1 0.4400 -4.5276 1.8791 34 1 -1.8169 -7.2365 0.8166 35 1 3.9509 -2.3035 0.1595 36 1 3.7085 -0.8019 -0.7647 37 1 5.8236 0.1074 0.1450 38 1 6.1103 -1.4398 -0.6878 39 1 7.2952 -1.3282 1.5084 40 1 6.0814 -2.6304 1.4739 41 1 5.7038 0.1510 2.6767 42 1 5.9075 -1.3661 3.5857 43 1 3.5108 -0.7300 3.4133 44 1 3.8371 -2.2621 2.5682 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000331214522.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:52:28 Heat of formation + Delta-G solvation = -47.268154 kcal Electronic energy + Delta-G solvation = -22046.496078 eV Core-core repulsion = 18998.149881 eV Total energy + Delta-G solvation = -3048.346197 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.33182 -37.57736 -35.71261 -34.31370 -32.47416 -31.97012 -30.57063 -28.09952 -26.78681 -26.20644 -23.25842 -23.05492 -22.29645 -20.15856 -19.73736 -19.40338 -17.13586 -16.29154 -15.80919 -15.10351 -14.96158 -14.60664 -14.34616 -14.29079 -13.88263 -13.62042 -13.16930 -12.87573 -12.83738 -12.38313 -12.14448 -12.08771 -11.98764 -11.84310 -11.68146 -11.08473 -10.98108 -10.96754 -10.78695 -10.73847 -10.59913 -10.46835 -10.28370 -10.17688 -9.96642 -9.58492 -9.39799 -8.74731 -7.86904 -7.67366 -6.19250 -4.26375 3.21385 3.27076 3.28820 3.31688 4.05981 4.10396 4.35867 4.87089 4.97118 5.05438 5.11144 5.12989 5.17121 5.31750 5.46231 5.51488 5.61279 5.65924 5.74613 5.78453 5.80282 5.85527 5.98949 6.01632 6.07067 6.09803 6.17657 6.19489 6.28802 6.33013 6.39370 6.45337 6.53904 6.65786 7.18218 7.30439 7.32406 7.43913 7.48609 7.64010 7.94442 8.59130 8.74982 9.06474 9.40670 10.90879 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.025035 B = 0.004913 C = 0.004377 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1118.156868 B = 5698.168223 C = 6395.090896 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.081 4.081 3 C -0.132 4.132 4 C 0.068 3.932 5 H 0.098 0.902 6 C 0.472 3.528 7 O -0.553 6.553 8 N -0.710 5.710 9 C 0.247 3.753 10 C -0.542 4.542 11 H 0.063 0.937 12 C 0.064 3.936 13 N -0.886 5.886 14 Si 0.902 3.098 15 H -0.271 1.271 16 H -0.282 1.282 17 H -0.282 1.282 18 N -0.506 5.506 19 C 0.025 3.975 20 C -0.111 4.111 21 C -0.120 4.120 22 C -0.110 4.110 23 C 0.042 3.958 24 H 0.059 0.941 25 H 0.057 0.943 26 H 0.076 0.924 27 H 0.073 0.927 28 H 0.051 0.949 29 H 0.067 0.933 30 H 0.046 0.954 31 H 0.392 0.608 32 H 0.025 0.975 33 H 0.025 0.975 34 H 0.265 0.735 35 H 0.084 0.916 36 H 0.066 0.934 37 H 0.061 0.939 38 H 0.060 0.940 39 H 0.056 0.944 40 H 0.061 0.939 41 H 0.064 0.936 42 H 0.061 0.939 43 H 0.064 0.936 44 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.225 14.491 0.105 17.178 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.100 4.100 3 C -0.190 4.190 4 C -0.045 4.045 5 H 0.116 0.884 6 C 0.256 3.744 7 O -0.433 6.433 8 N -0.360 5.360 9 C 0.126 3.874 10 C -0.581 4.581 11 H 0.081 0.919 12 C -0.140 4.140 13 N -0.523 5.523 14 Si 0.730 3.270 15 H -0.196 1.196 16 H -0.208 1.208 17 H -0.208 1.208 18 N -0.229 5.229 19 C -0.102 4.102 20 C -0.149 4.149 21 C -0.158 4.158 22 C -0.148 4.148 23 C -0.086 4.086 24 H 0.078 0.922 25 H 0.076 0.924 26 H 0.095 0.905 27 H 0.091 0.909 28 H 0.070 0.930 29 H 0.086 0.914 30 H 0.065 0.935 31 H 0.228 0.772 32 H 0.043 0.957 33 H 0.043 0.957 34 H 0.075 0.925 35 H 0.102 0.898 36 H 0.084 0.916 37 H 0.080 0.920 38 H 0.079 0.921 39 H 0.075 0.925 40 H 0.080 0.920 41 H 0.083 0.917 42 H 0.079 0.921 43 H 0.083 0.917 44 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 9.930 14.160 -0.007 17.295 hybrid contribution -1.625 -0.821 0.186 1.830 sum 8.305 13.339 0.179 15.715 Atomic orbital electron populations 1.22217 0.94688 1.03741 1.02044 1.21031 0.95753 0.96765 0.96476 1.21682 1.02127 0.94402 1.00768 1.21943 0.89918 0.92230 1.00405 0.88388 1.21742 0.83602 0.91556 0.77458 1.90525 1.49027 1.52637 1.51121 1.46939 1.06643 1.12554 1.69877 1.19097 0.95061 0.75904 0.97315 1.21255 0.91283 0.93891 1.51654 0.91908 1.24948 0.98855 0.95485 0.94663 1.69982 1.35569 0.98812 1.47936 0.86379 0.84550 0.78284 0.77824 1.19583 1.20774 1.20795 1.62414 1.02116 1.55461 1.02867 1.22556 0.93554 1.01581 0.92537 1.21531 0.95438 1.00717 0.97215 1.21550 0.98681 1.00445 0.95103 1.21506 0.94687 1.00879 0.97707 1.22205 0.95102 0.99734 0.91574 0.92154 0.92413 0.90486 0.90915 0.92967 0.91395 0.93454 0.77179 0.95693 0.95679 0.92509 0.89799 0.91553 0.92037 0.92133 0.92543 0.92014 0.91744 0.92064 0.91733 0.92307 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.14 8.12 37.16 0.30 -1.83 16 2 C -0.08 -1.06 1.97 -90.61 -0.18 -1.24 16 3 C -0.13 -1.45 8.98 37.16 0.33 -1.12 16 4 C 0.07 1.01 1.81 -68.86 -0.12 0.88 16 5 H 0.10 1.35 8.08 -51.93 -0.42 0.93 16 6 C 0.47 9.23 6.41 -10.98 -0.07 9.15 16 7 O -0.55 -12.64 11.69 5.56 0.06 -12.57 16 8 N -0.71 -14.75 4.34 -61.47 -0.27 -15.01 16 9 C 0.25 6.50 5.43 -5.20 -0.03 6.47 16 10 C -0.54 -14.61 9.28 -34.44 -0.32 -14.93 16 11 H 0.06 1.59 7.60 -52.49 -0.40 1.19 16 12 C 0.06 1.77 5.46 -17.82 -0.10 1.67 16 13 N -0.89 -26.03 13.29 55.43 0.74 -25.30 16 14 Si 0.90 20.76 29.54 -169.99 -5.02 15.74 16 15 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16 16 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 17 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 18 N -0.51 -7.26 3.66 -228.07 -0.84 -8.10 16 19 C 0.02 0.37 4.63 -3.83 -0.02 0.35 16 20 C -0.11 -1.38 6.09 -26.65 -0.16 -1.54 16 21 C -0.12 -1.46 6.00 -26.61 -0.16 -1.62 16 22 C -0.11 -1.33 6.09 -26.65 -0.16 -1.49 16 23 C 0.04 0.61 5.08 -3.83 -0.02 0.59 16 24 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 25 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 26 H 0.08 1.17 5.34 -51.93 -0.28 0.89 16 27 H 0.07 1.05 6.59 -51.93 -0.34 0.70 16 28 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 29 H 0.07 0.78 7.35 -51.93 -0.38 0.40 16 30 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.39 7.16 5.93 -40.82 -0.24 6.92 16 32 H 0.03 0.73 8.14 -51.93 -0.42 0.30 16 33 H 0.03 0.74 8.14 -51.93 -0.42 0.31 16 34 H 0.27 7.30 8.31 -40.82 -0.34 6.96 16 35 H 0.08 1.56 5.23 -51.93 -0.27 1.29 16 36 H 0.07 0.95 6.15 -51.93 -0.32 0.63 16 37 H 0.06 0.71 8.14 -51.92 -0.42 0.29 16 38 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 39 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 40 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 41 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 42 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 43 H 0.06 0.87 8.08 -51.93 -0.42 0.45 16 44 H 0.06 1.05 6.15 -51.93 -0.32 0.73 16 LS Contribution 331.69 15.07 5.00 5.00 Total: -1.00 -29.92 331.69 -8.63 -38.55 By element: Atomic # 1 Polarization: 13.94 SS G_CDS: -7.60 Total: 6.34 kcal Atomic # 6 Polarization: -3.94 SS G_CDS: -0.71 Total: -4.64 kcal Atomic # 7 Polarization: -48.04 SS G_CDS: -0.37 Total: -48.40 kcal Atomic # 8 Polarization: -12.64 SS G_CDS: 0.06 Total: -12.57 kcal Atomic # 14 Polarization: 20.76 SS G_CDS: -5.02 Total: 15.74 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -29.92 -8.63 -38.55 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331214522.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.718 kcal (2) G-P(sol) polarization free energy of solvation -29.922 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.641 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.628 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.550 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.268 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds