Wall clock time and date at job start Mon Mar 30 2020 00:52:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53006 * 109.47039 * 2 1 4 4 C 1.53001 * 109.46787 * 119.99544 * 2 1 3 5 5 H 1.08990 * 109.47369 * 305.42281 * 4 2 1 6 6 C 1.50706 * 109.46690 * 65.42666 * 4 2 1 7 7 O 1.21280 * 119.99750 * 113.40430 * 6 4 2 8 8 N 1.34777 * 119.99958 * 293.39528 * 6 4 2 9 9 C 1.46490 * 119.99916 * 175.95459 * 8 6 4 10 10 C 1.50705 * 109.47150 * 180.02562 * 9 8 6 11 11 H 1.07995 * 119.99699 * 359.97438 * 10 9 8 12 12 C 1.37873 * 119.99908 * 180.02562 * 10 9 8 13 13 N 1.31515 * 120.00607 * 359.97438 * 12 10 9 14 14 Si 1.86805 * 119.99869 * 180.02562 * 12 10 9 15 15 H 1.48502 * 109.47109 * 359.97438 * 14 12 10 16 16 H 1.48498 * 109.47524 * 119.99819 * 14 12 10 17 17 H 1.48498 * 109.47117 * 239.99578 * 14 12 10 18 18 N 1.46899 * 109.46914 * 185.42069 * 4 2 1 19 19 C 1.46850 * 111.00363 * 299.21066 * 18 4 2 20 20 C 1.53038 * 109.52426 * 174.16019 * 19 18 4 21 21 C 1.53121 * 109.27684 * 59.17994 * 20 19 18 22 22 C 1.53115 * 109.16178 * 302.34380 * 21 20 19 23 23 C 1.46846 * 111.00034 * 175.00317 * 18 4 2 24 24 H 1.09003 * 109.46732 * 56.70671 * 1 2 3 25 25 H 1.09002 * 109.47329 * 296.70349 * 1 2 3 26 26 H 1.08998 * 109.46817 * 176.69863 * 1 2 3 27 27 H 1.09003 * 109.47358 * 240.00001 * 2 1 3 28 28 H 1.08993 * 109.46981 * 59.99862 * 3 2 1 29 29 H 1.08996 * 109.46822 * 179.97438 * 3 2 1 30 30 H 1.09002 * 109.46791 * 299.99480 * 3 2 1 31 31 H 0.97002 * 119.99926 * 355.95927 * 8 6 4 32 32 H 1.09004 * 109.47523 * 299.99843 * 9 8 6 33 33 H 1.09005 * 109.47613 * 60.00391 * 9 8 6 34 34 H 0.97000 * 120.00256 * 179.97438 * 13 12 10 35 35 H 1.08995 * 109.46239 * 294.17772 * 19 18 4 36 36 H 1.09003 * 109.45899 * 54.14904 * 19 18 4 37 37 H 1.09008 * 109.50020 * 299.24323 * 20 19 18 38 38 H 1.08994 * 109.53761 * 179.14363 * 20 19 18 39 39 H 1.09002 * 109.52177 * 182.43973 * 21 20 19 40 40 H 1.08998 * 109.57297 * 62.28521 * 21 20 19 41 41 H 1.08997 * 109.50942 * 297.71338 * 22 21 20 42 42 H 1.08998 * 109.53503 * 177.61490 * 22 21 20 43 43 H 1.09003 * 109.46087 * 305.85768 * 23 18 4 44 44 H 1.09007 * 109.46443 * 65.83349 * 23 18 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0399 -0.7212 1.2493 5 1 1.5995 -0.2665 2.1365 6 6 1.6502 -2.1755 1.1840 7 8 2.5055 -3.0280 1.0720 8 7 0.3512 -2.5287 1.2502 9 6 -0.0345 -3.9337 1.0978 10 6 -1.5321 -4.0586 1.2108 11 1 -2.1360 -3.1793 1.3797 12 6 -2.1310 -5.2954 1.0996 13 7 -1.3955 -6.3662 0.8944 14 14 -3.9874 -5.4502 1.2390 15 1 -4.5802 -4.1079 1.4673 16 1 -4.5320 -6.0252 -0.0171 17 1 -4.3257 -6.3405 2.3783 18 7 3.5031 -0.6089 1.3166 19 6 4.1330 -1.2290 0.1439 20 6 5.6404 -0.9667 0.1744 21 6 6.2291 -1.5506 1.4618 22 6 5.5225 -0.9238 2.6669 23 6 4.0185 -1.1873 2.5640 24 1 -0.3633 0.5641 -0.8590 25 1 -0.3634 0.4618 0.9181 26 1 -0.3633 -1.0260 -0.0592 27 1 1.8934 -0.5138 -0.8900 28 1 1.6767 1.9563 0.8899 29 1 3.1300 1.4425 0.0005 30 1 1.6767 1.9563 -0.8901 31 1 -0.3283 -1.8525 1.3987 32 1 0.2871 -4.2949 0.1209 33 1 0.4400 -4.5276 1.8791 34 1 -1.8169 -7.2365 0.8166 35 1 3.9509 -2.3035 0.1595 36 1 3.7085 -0.8019 -0.7647 37 1 5.8236 0.1074 0.1450 38 1 6.1103 -1.4398 -0.6878 39 1 7.2952 -1.3282 1.5084 40 1 6.0814 -2.6304 1.4739 41 1 5.7038 0.1510 2.6767 42 1 5.9075 -1.3661 3.5857 43 1 3.5108 -0.7300 3.4133 44 1 3.8371 -2.2621 2.5682 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000331214522.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:52:28 Heat of formation + Delta-G solvation = -66.668715 kcal Electronic energy + Delta-G solvation = -22047.337350 eV Core-core repulsion = 18998.149881 eV Total energy + Delta-G solvation = -3049.187469 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.74454 -38.96726 -36.92978 -36.15977 -34.38169 -33.18497 -31.68166 -29.87265 -27.80804 -27.71464 -24.90231 -24.19812 -23.75650 -21.66705 -20.94855 -20.69784 -18.87325 -17.67266 -17.51772 -16.82234 -16.38726 -16.08042 -15.90103 -15.48783 -15.08392 -14.87943 -14.52911 -14.26452 -14.07960 -13.94479 -13.75682 -13.46969 -13.05616 -12.94449 -12.90431 -12.84168 -12.78730 -12.25531 -12.18341 -11.83735 -11.79994 -11.71145 -11.56249 -11.47153 -11.23846 -11.09178 -11.03870 -10.82409 -9.77609 -9.07815 -8.31939 -6.49183 1.40959 1.41932 1.55617 1.67962 2.30366 2.58668 2.87281 3.02835 3.72185 3.87918 3.92176 4.00954 4.10016 4.13206 4.33899 4.40143 4.49809 4.56902 4.64913 4.72258 4.83672 4.90962 4.95370 4.98997 5.02121 5.06535 5.10821 5.14042 5.17414 5.21472 5.26652 5.28247 5.30428 5.43933 5.45952 5.53858 5.62085 5.69606 5.82399 6.00248 6.10752 6.62246 6.86923 7.20605 7.45599 8.80212 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.025035 B = 0.004913 C = 0.004377 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1118.156868 B = 5698.168223 C = 6395.090896 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.077 4.077 3 C -0.123 4.123 4 C 0.077 3.923 5 H 0.120 0.880 6 C 0.467 3.533 7 O -0.590 6.590 8 N -0.704 5.704 9 C 0.267 3.733 10 C -0.554 4.554 11 H 0.083 0.917 12 C 0.004 3.996 13 N -0.932 5.932 14 Si 0.984 3.016 15 H -0.251 1.251 16 H -0.278 1.278 17 H -0.279 1.279 18 N -0.488 5.488 19 C 0.026 3.974 20 C -0.106 4.106 21 C -0.121 4.121 22 C -0.104 4.104 23 C 0.038 3.962 24 H 0.077 0.923 25 H 0.077 0.923 26 H 0.046 0.954 27 H 0.054 0.946 28 H 0.064 0.936 29 H 0.063 0.937 30 H 0.062 0.938 31 H 0.407 0.593 32 H -0.016 1.016 33 H -0.018 1.018 34 H 0.268 0.732 35 H 0.040 0.960 36 H 0.070 0.930 37 H 0.081 0.919 38 H 0.067 0.933 39 H 0.082 0.918 40 H 0.035 0.965 41 H 0.083 0.917 42 H 0.071 0.929 43 H 0.078 0.922 44 H 0.016 0.984 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.513 17.752 0.521 19.695 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.096 4.096 3 C -0.180 4.180 4 C -0.036 4.036 5 H 0.138 0.862 6 C 0.253 3.747 7 O -0.472 6.472 8 N -0.357 5.357 9 C 0.144 3.856 10 C -0.592 4.592 11 H 0.101 0.899 12 C -0.195 4.195 13 N -0.571 5.571 14 Si 0.807 3.193 15 H -0.175 1.175 16 H -0.204 1.204 17 H -0.205 1.205 18 N -0.210 5.210 19 C -0.101 4.101 20 C -0.144 4.144 21 C -0.159 4.159 22 C -0.142 4.142 23 C -0.090 4.090 24 H 0.096 0.904 25 H 0.096 0.904 26 H 0.065 0.935 27 H 0.072 0.928 28 H 0.083 0.917 29 H 0.082 0.918 30 H 0.081 0.919 31 H 0.246 0.754 32 H 0.002 0.998 33 H 0.000 1.000 34 H 0.077 0.923 35 H 0.058 0.942 36 H 0.089 0.911 37 H 0.099 0.901 38 H 0.085 0.915 39 H 0.100 0.900 40 H 0.054 0.946 41 H 0.102 0.898 42 H 0.090 0.910 43 H 0.096 0.904 44 H 0.035 0.965 Dipole moment (debyes) X Y Z Total from point charges 9.229 17.475 0.414 19.767 hybrid contribution -1.315 -1.865 0.038 2.283 sum 7.914 15.610 0.452 17.507 Atomic orbital electron populations 1.22187 0.94089 1.02223 1.03950 1.21037 0.96213 0.97966 0.94386 1.21608 1.01817 0.92375 1.02189 1.22114 0.90552 0.88467 1.02479 0.86219 1.22838 0.82452 0.93662 0.75704 1.90544 1.49951 1.54503 1.52200 1.46730 1.07887 1.10531 1.70536 1.18489 0.95129 0.78481 0.93488 1.21626 0.91359 0.94834 1.51341 0.89919 1.26067 1.04686 0.94931 0.93819 1.70147 1.38246 0.99627 1.49057 0.85124 0.77362 0.79084 0.77751 1.17475 1.20384 1.20472 1.62551 1.01548 1.54238 1.02711 1.22489 0.95817 0.98835 0.92995 1.21518 0.93198 1.01947 0.97709 1.21569 1.00292 0.98856 0.95161 1.21495 0.92482 1.02057 0.98122 1.22273 0.97440 0.97230 0.92027 0.90429 0.90377 0.93536 0.92779 0.91651 0.91756 0.91924 0.75395 0.99826 1.00023 0.92273 0.94180 0.91115 0.90087 0.91452 0.89989 0.94614 0.89820 0.90991 0.90399 0.96521 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.87 8.12 71.98 0.58 -3.29 16 2 C -0.08 -1.89 1.97 -10.79 -0.02 -1.91 16 3 C -0.12 -2.27 8.98 71.98 0.65 -1.63 16 4 C 0.08 2.23 1.81 44.17 0.08 2.31 16 5 H 0.12 3.02 8.08 -2.39 -0.02 3.00 16 6 C 0.47 19.05 6.41 87.66 0.56 19.61 16 7 O -0.59 -29.07 11.69 -3.03 -0.04 -29.11 16 8 N -0.70 -30.45 4.34 -466.79 -2.02 -32.47 16 9 C 0.27 14.94 5.43 85.64 0.47 15.40 16 10 C -0.55 -30.42 9.28 25.60 0.24 -30.18 16 11 H 0.08 4.11 7.60 -2.91 -0.02 4.09 16 12 C 0.00 0.25 5.46 84.65 0.46 0.71 16 13 N -0.93 -56.84 13.29 21.45 0.28 -56.55 16 14 Si 0.98 42.50 29.54 68.60 2.03 44.53 16 15 H -0.25 -9.98 7.11 99.48 0.71 -9.27 16 16 H -0.28 -11.80 7.11 99.48 0.71 -11.09 16 17 H -0.28 -11.86 7.11 99.48 0.71 -11.16 16 18 N -0.49 -13.61 3.66 -875.49 -3.21 -16.82 16 19 C 0.03 0.79 4.63 86.33 0.40 1.19 16 20 C -0.11 -2.49 6.09 30.65 0.19 -2.30 16 21 C -0.12 -2.82 6.00 30.67 0.18 -2.63 16 22 C -0.10 -2.33 6.09 30.65 0.19 -2.14 16 23 C 0.04 1.10 5.08 86.33 0.44 1.54 16 24 H 0.08 1.54 8.14 -2.39 -0.02 1.52 16 25 H 0.08 1.49 8.14 -2.39 -0.02 1.47 16 26 H 0.05 1.38 5.34 -2.39 -0.01 1.37 16 27 H 0.05 1.54 6.59 -2.39 -0.02 1.52 16 28 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 29 H 0.06 1.26 7.35 -2.39 -0.02 1.24 16 30 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 31 H 0.41 14.91 5.93 -92.71 -0.55 14.36 16 32 H -0.02 -1.02 8.14 -2.39 -0.02 -1.04 16 33 H -0.02 -1.15 8.14 -2.38 -0.02 -1.17 16 34 H 0.27 15.23 8.31 -92.71 -0.77 14.46 16 35 H 0.04 1.59 5.23 -2.39 -0.01 1.58 16 36 H 0.07 2.03 6.15 -2.39 -0.01 2.01 16 37 H 0.08 1.63 8.14 -2.38 -0.02 1.61 16 38 H 0.07 1.48 8.14 -2.39 -0.02 1.46 16 39 H 0.08 1.51 8.14 -2.39 -0.02 1.49 16 40 H 0.03 1.00 8.14 -2.39 -0.02 0.98 16 41 H 0.08 1.61 8.14 -2.39 -0.02 1.59 16 42 H 0.07 1.46 8.14 -2.39 -0.02 1.44 16 43 H 0.08 2.00 8.08 -2.39 -0.02 1.98 16 44 H 0.02 0.62 6.15 -2.38 -0.01 0.61 16 Total: -1.00 -69.52 331.69 1.87 -67.65 By element: Atomic # 1 Polarization: 25.68 SS G_CDS: 0.42 Total: 26.10 kcal Atomic # 6 Polarization: -7.74 SS G_CDS: 4.41 Total: -3.33 kcal Atomic # 7 Polarization: -100.90 SS G_CDS: -4.95 Total: -105.84 kcal Atomic # 8 Polarization: -29.07 SS G_CDS: -0.04 Total: -29.11 kcal Atomic # 14 Polarization: 42.50 SS G_CDS: 2.03 Total: 44.53 kcal Total: -69.52 1.87 -67.65 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331214522.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.982 kcal (2) G-P(sol) polarization free energy of solvation -69.525 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.543 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.875 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.650 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.669 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds