Wall clock time and date at job start Mon Mar 30 2020 00:40:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52992 * 109.47981 * 2 1 4 4 C 1.53008 * 109.46878 * 120.00392 * 2 1 3 5 5 H 1.09000 * 112.77787 * 189.40991 * 4 2 1 6 6 C 1.53492 * 113.46342 * 320.18551 * 4 2 1 7 7 C 1.53239 * 83.43002 * 140.68077 * 6 4 2 8 8 N 1.47060 * 113.47030 * 58.62418 * 4 2 1 9 9 C 1.34774 * 136.05941 * 38.06421 * 8 4 2 10 10 O 1.21588 * 120.00122 * 354.93066 * 9 8 4 11 11 N 1.34779 * 120.00103 * 174.92805 * 9 8 4 12 12 C 1.46504 * 119.99854 * 180.02562 * 11 9 8 13 13 C 1.52999 * 109.46974 * 180.02562 * 12 11 9 14 14 C 1.52997 * 109.47122 * 299.99786 * 13 12 11 15 15 C 1.53000 * 109.47350 * 59.99601 * 13 12 11 16 16 C 1.50696 * 109.47258 * 179.97438 * 13 12 11 17 17 H 1.08004 * 119.99500 * 359.97438 * 16 13 12 18 18 C 1.37871 * 120.00283 * 179.97438 * 16 13 12 19 19 N 1.31519 * 120.00163 * 359.97438 * 18 16 13 20 20 Si 1.86801 * 120.00120 * 180.02562 * 18 16 13 21 21 H 1.48496 * 109.47496 * 59.99986 * 20 18 16 22 22 H 1.48509 * 109.47044 * 179.97438 * 20 18 16 23 23 H 1.48497 * 109.46994 * 299.99863 * 20 18 16 24 24 H 1.09004 * 109.47195 * 66.97544 * 1 2 3 25 25 H 1.08995 * 109.47961 * 186.98129 * 1 2 3 26 26 H 1.09007 * 109.46885 * 306.98801 * 1 2 3 27 27 H 1.09010 * 109.47152 * 239.99462 * 2 1 3 28 28 H 1.09000 * 109.47750 * 180.02562 * 3 2 1 29 29 H 1.09007 * 109.46739 * 300.00035 * 3 2 1 30 30 H 1.09001 * 109.46887 * 59.99385 * 3 2 1 31 31 H 1.09004 * 114.21208 * 254.43761 * 6 4 2 32 32 H 1.09003 * 114.20574 * 27.26599 * 6 4 2 33 33 H 1.08995 * 113.38594 * 219.29139 * 7 6 4 34 34 H 1.09001 * 113.46737 * 88.92557 * 7 6 4 35 35 H 0.97001 * 120.00008 * 0.02562 * 11 9 8 36 36 H 1.09005 * 109.46661 * 299.99681 * 12 11 9 37 37 H 1.08997 * 109.47406 * 60.00122 * 12 11 9 38 38 H 1.09009 * 109.47003 * 59.99793 * 14 13 12 39 39 H 1.09000 * 109.47711 * 179.97438 * 14 13 12 40 40 H 1.09009 * 109.47142 * 300.00370 * 14 13 12 41 41 H 1.09007 * 109.47017 * 60.00302 * 15 13 12 42 42 H 1.09000 * 109.47483 * 180.02562 * 15 13 12 43 43 H 1.08997 * 109.47395 * 300.00659 * 15 13 12 44 44 H 0.97000 * 120.00126 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0401 1.4423 0.0000 4 6 2.0399 -0.7214 1.2493 5 1 3.1153 -0.6128 1.3898 6 6 1.2239 -0.4090 2.5113 7 6 1.4345 -1.8986 2.8028 8 7 1.5730 -2.1119 1.3543 9 6 1.3599 -3.1313 0.4988 10 8 1.4839 -2.9566 -0.6980 11 7 1.0094 -4.3444 0.9700 12 6 0.7783 -5.4527 0.0400 13 6 0.3954 -6.7075 0.8271 14 6 1.5301 -7.0743 1.7857 15 6 -0.8808 -6.4383 1.6269 16 6 0.1571 -7.8473 -0.1294 17 1 0.2673 -7.6920 -1.1925 18 6 -0.2016 -9.0882 0.3525 19 7 -0.3353 -9.2775 1.6471 20 14 -0.4962 -10.5013 -0.8332 21 1 0.7422 -10.7624 -1.6098 22 1 -0.8668 -11.7196 -0.0691 23 1 -1.5979 -10.1455 -1.7632 24 1 -0.3634 0.4020 -0.9458 25 1 -0.3635 -1.0199 0.1249 26 1 -0.3633 0.6183 0.8209 27 1 1.8933 -0.5140 -0.8900 28 1 3.1301 1.4423 -0.0005 29 1 1.6768 1.9562 -0.8901 30 1 1.6768 1.9562 0.8899 31 1 1.7229 0.2605 3.2119 32 1 0.1864 -0.1374 2.3167 33 1 0.5575 -2.3838 3.2312 34 1 2.3470 -2.1069 3.3614 35 1 0.9101 -4.4838 1.9248 36 1 -0.0304 -5.1915 -0.6426 37 1 1.6874 -5.6442 -0.5300 38 1 1.7020 -6.2497 2.4776 39 1 1.2572 -7.9680 2.3469 40 1 2.4394 -7.2661 1.2159 41 1 -1.6893 -6.1770 0.9440 42 1 -1.1534 -7.3321 2.1881 43 1 -0.7090 -5.6137 2.3188 44 1 -0.5873 -10.1506 1.9862 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000332030929.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:40:10 Heat of formation + Delta-G solvation = -5.863702 kcal Electronic energy + Delta-G solvation = -21603.060454 eV Core-core repulsion = 18556.509689 eV Total energy + Delta-G solvation = -3046.550765 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.62934 -38.21564 -36.14028 -34.47440 -33.06628 -30.90254 -29.14635 -27.21545 -25.94476 -25.69482 -25.41389 -24.54383 -22.27513 -20.60112 -19.00260 -18.65619 -17.44424 -16.13193 -15.93936 -15.64277 -14.78053 -14.75022 -14.32519 -13.84057 -13.62006 -13.17459 -13.06689 -12.82537 -12.50645 -12.39494 -12.33960 -12.13228 -11.61093 -11.44182 -11.34056 -11.15963 -10.99115 -10.84594 -10.80614 -10.70616 -10.35007 -10.25727 -10.16836 -9.59741 -9.53875 -9.26172 -8.76938 -8.62198 -8.37240 -8.06225 -5.99570 -4.09493 2.82995 3.32036 3.35937 3.40087 3.69620 4.23224 4.38585 4.51195 4.78927 4.92664 4.96389 5.08317 5.19721 5.27047 5.39798 5.43724 5.54938 5.56832 5.66184 5.81381 5.86091 5.88276 6.11361 6.13848 6.29207 6.38963 6.40527 6.44320 6.54837 6.84362 6.86005 6.98003 7.06291 7.16707 7.40510 7.58801 7.67398 7.72975 8.03694 8.15578 8.41679 8.55339 8.90234 9.14737 9.56043 11.01846 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.038586 B = 0.004065 C = 0.003879 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 725.480597 B = 6886.221988 C = 7216.174616 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.103 4.103 3 C -0.142 4.142 4 C 0.159 3.841 5 H 0.084 0.916 6 C -0.157 4.157 7 C 0.098 3.902 8 N -0.666 5.666 9 C 0.728 3.272 10 O -0.594 6.594 11 N -0.731 5.731 12 C 0.151 3.849 13 C 0.056 3.944 14 C -0.128 4.128 15 C -0.128 4.128 16 C -0.505 4.505 17 H 0.057 0.943 18 C 0.066 3.934 19 N -0.887 5.887 20 Si 0.894 3.106 21 H -0.277 1.277 22 H -0.288 1.288 23 H -0.277 1.277 24 H 0.049 0.951 25 H 0.058 0.942 26 H 0.052 0.948 27 H 0.086 0.914 28 H 0.053 0.947 29 H 0.055 0.945 30 H 0.054 0.946 31 H 0.084 0.916 32 H 0.100 0.900 33 H 0.074 0.926 34 H 0.078 0.922 35 H 0.392 0.608 36 H 0.051 0.949 37 H 0.051 0.949 38 H 0.004 0.996 39 H 0.085 0.915 40 H 0.026 0.974 41 H 0.026 0.974 42 H 0.085 0.915 43 H 0.004 0.996 44 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.010 17.683 4.941 18.605 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.122 4.122 3 C -0.200 4.200 4 C 0.055 3.945 5 H 0.102 0.898 6 C -0.195 4.195 7 C -0.026 4.026 8 N -0.407 5.407 9 C 0.431 3.569 10 O -0.472 6.472 11 N -0.385 5.385 12 C 0.028 3.972 13 C 0.055 3.945 14 C -0.186 4.186 15 C -0.186 4.186 16 C -0.544 4.544 17 H 0.075 0.925 18 C -0.135 4.135 19 N -0.525 5.525 20 Si 0.722 3.278 21 H -0.203 1.203 22 H -0.213 1.213 23 H -0.203 1.203 24 H 0.068 0.932 25 H 0.077 0.923 26 H 0.070 0.930 27 H 0.105 0.895 28 H 0.072 0.928 29 H 0.074 0.926 30 H 0.073 0.927 31 H 0.103 0.897 32 H 0.118 0.882 33 H 0.092 0.908 34 H 0.096 0.904 35 H 0.227 0.773 36 H 0.069 0.931 37 H 0.070 0.930 38 H 0.023 0.977 39 H 0.103 0.897 40 H 0.045 0.955 41 H 0.045 0.955 42 H 0.103 0.897 43 H 0.023 0.977 44 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 3.003 17.397 4.000 18.101 hybrid contribution -0.118 -0.996 -0.119 1.010 sum 2.885 16.400 3.880 17.098 Atomic orbital electron populations 1.21787 0.94882 1.02070 1.00784 1.21254 0.96591 0.95597 0.98769 1.21763 1.00758 0.95709 1.01735 1.22504 0.97900 0.79318 0.94792 0.89800 1.23594 1.02219 0.96213 0.97453 1.22779 1.01505 0.94956 0.83326 1.48825 1.71465 1.12599 1.07831 1.15434 0.78112 0.79324 0.84015 1.90868 1.60323 1.82770 1.13280 1.45484 1.73358 1.08671 1.11023 1.21575 0.99532 0.84808 0.91240 1.18356 0.92484 0.90241 0.93373 1.21808 0.97623 1.00660 0.98527 1.21805 0.98262 0.99896 0.98629 1.20952 1.46692 0.93948 0.92801 0.92475 1.24874 0.95031 0.98454 0.95127 1.69799 1.47972 1.23126 1.11641 0.86629 0.78742 0.81468 0.80987 1.20286 1.21349 1.20277 0.93159 0.92273 0.92958 0.89534 0.92803 0.92574 0.92685 0.89710 0.88197 0.90754 0.90374 0.77321 0.93065 0.93049 0.97654 0.89661 0.95503 0.95497 0.89675 0.97671 0.92992 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.65 8.18 37.15 0.30 -1.35 16 2 C -0.10 -1.22 2.64 -90.62 -0.24 -1.46 16 3 C -0.14 -1.23 9.16 37.15 0.34 -0.89 16 4 C 0.16 1.80 3.84 -72.40 -0.28 1.52 16 5 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 6 C -0.16 -1.32 7.65 -26.35 -0.20 -1.53 16 7 C 0.10 1.01 8.28 -8.64 -0.07 0.94 16 8 N -0.67 -9.63 2.99 -183.39 -0.55 -10.18 16 9 C 0.73 13.92 8.21 -86.92 -0.71 13.21 16 10 O -0.59 -13.44 15.88 5.29 0.08 -13.35 16 11 N -0.73 -14.10 4.96 -65.22 -0.32 -14.42 16 12 C 0.15 3.39 4.50 -4.04 -0.02 3.37 16 13 C 0.06 1.34 0.50 -155.66 -0.08 1.26 16 14 C -0.13 -2.97 8.08 37.16 0.30 -2.67 16 15 C -0.13 -2.96 8.08 37.16 0.30 -2.66 16 16 C -0.51 -13.49 8.01 -34.44 -0.28 -13.77 16 17 H 0.06 1.54 7.74 -52.48 -0.41 1.13 16 18 C 0.07 1.76 5.15 -17.82 -0.09 1.67 16 19 N -0.89 -23.87 9.35 55.43 0.52 -23.35 16 20 Si 0.89 20.97 29.54 -169.99 -5.02 15.95 16 21 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 22 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 23 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 24 H 0.05 0.59 8.14 -51.93 -0.42 0.16 16 25 H 0.06 0.89 7.12 -51.93 -0.37 0.52 16 26 H 0.05 0.51 6.53 -51.93 -0.34 0.17 16 27 H 0.09 1.32 7.33 -51.92 -0.38 0.94 16 28 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 29 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 30 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 31 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 32 H 0.10 0.86 5.73 -51.93 -0.30 0.57 16 33 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 34 H 0.08 0.70 8.14 -51.93 -0.42 0.27 16 35 H 0.39 6.95 5.89 -40.82 -0.24 6.71 16 36 H 0.05 1.20 8.14 -51.93 -0.42 0.78 16 37 H 0.05 1.21 8.14 -51.93 -0.42 0.79 16 38 H 0.00 0.09 6.86 -51.92 -0.36 -0.26 16 39 H 0.08 2.16 6.07 -51.93 -0.32 1.85 16 40 H 0.03 0.61 8.14 -51.92 -0.42 0.19 16 41 H 0.03 0.61 8.14 -51.92 -0.42 0.19 16 42 H 0.08 2.15 6.07 -51.93 -0.32 1.84 16 43 H 0.00 0.09 6.86 -51.93 -0.36 -0.27 16 44 H 0.26 6.77 8.31 -40.82 -0.34 6.43 16 LS Contribution 338.55 15.07 5.10 5.10 Total: -1.00 -29.70 338.55 -8.50 -38.20 By element: Atomic # 1 Polarization: 11.99 SS G_CDS: -7.58 Total: 4.41 kcal Atomic # 6 Polarization: -1.63 SS G_CDS: -0.72 Total: -2.35 kcal Atomic # 7 Polarization: -47.60 SS G_CDS: -0.35 Total: -47.95 kcal Atomic # 8 Polarization: -13.44 SS G_CDS: 0.08 Total: -13.35 kcal Atomic # 14 Polarization: 20.97 SS G_CDS: -5.02 Total: 15.95 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -29.70 -8.50 -38.20 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000332030929.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.335 kcal (2) G-P(sol) polarization free energy of solvation -29.701 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.633 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.497 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.198 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.864 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds