Wall clock time and date at job start Mon Mar 30 2020 00:40:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52992 * 109.47981 * 2 1 4 4 C 1.53008 * 109.46878 * 120.00392 * 2 1 3 5 5 H 1.09000 * 112.77787 * 189.40991 * 4 2 1 6 6 C 1.53492 * 113.46342 * 320.18551 * 4 2 1 7 7 C 1.53239 * 83.43002 * 140.68077 * 6 4 2 8 8 N 1.47060 * 113.47030 * 58.62418 * 4 2 1 9 9 C 1.34774 * 136.05941 * 38.06421 * 8 4 2 10 10 O 1.21588 * 120.00122 * 354.93066 * 9 8 4 11 11 N 1.34779 * 120.00103 * 174.92805 * 9 8 4 12 12 C 1.46504 * 119.99854 * 180.02562 * 11 9 8 13 13 C 1.52999 * 109.46974 * 180.02562 * 12 11 9 14 14 C 1.52997 * 109.47122 * 299.99786 * 13 12 11 15 15 C 1.53000 * 109.47350 * 59.99601 * 13 12 11 16 16 C 1.50696 * 109.47258 * 179.97438 * 13 12 11 17 17 H 1.08004 * 119.99500 * 359.97438 * 16 13 12 18 18 C 1.37871 * 120.00283 * 179.97438 * 16 13 12 19 19 N 1.31519 * 120.00163 * 359.97438 * 18 16 13 20 20 Si 1.86801 * 120.00120 * 180.02562 * 18 16 13 21 21 H 1.48496 * 109.47496 * 59.99986 * 20 18 16 22 22 H 1.48509 * 109.47044 * 179.97438 * 20 18 16 23 23 H 1.48497 * 109.46994 * 299.99863 * 20 18 16 24 24 H 1.09004 * 109.47195 * 66.97544 * 1 2 3 25 25 H 1.08995 * 109.47961 * 186.98129 * 1 2 3 26 26 H 1.09007 * 109.46885 * 306.98801 * 1 2 3 27 27 H 1.09010 * 109.47152 * 239.99462 * 2 1 3 28 28 H 1.09000 * 109.47750 * 180.02562 * 3 2 1 29 29 H 1.09007 * 109.46739 * 300.00035 * 3 2 1 30 30 H 1.09001 * 109.46887 * 59.99385 * 3 2 1 31 31 H 1.09004 * 114.21208 * 254.43761 * 6 4 2 32 32 H 1.09003 * 114.20574 * 27.26599 * 6 4 2 33 33 H 1.08995 * 113.38594 * 219.29139 * 7 6 4 34 34 H 1.09001 * 113.46737 * 88.92557 * 7 6 4 35 35 H 0.97001 * 120.00008 * 0.02562 * 11 9 8 36 36 H 1.09005 * 109.46661 * 299.99681 * 12 11 9 37 37 H 1.08997 * 109.47406 * 60.00122 * 12 11 9 38 38 H 1.09009 * 109.47003 * 59.99793 * 14 13 12 39 39 H 1.09000 * 109.47711 * 179.97438 * 14 13 12 40 40 H 1.09009 * 109.47142 * 300.00370 * 14 13 12 41 41 H 1.09007 * 109.47017 * 60.00302 * 15 13 12 42 42 H 1.09000 * 109.47483 * 180.02562 * 15 13 12 43 43 H 1.08997 * 109.47395 * 300.00659 * 15 13 12 44 44 H 0.97000 * 120.00126 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0401 1.4423 0.0000 4 6 2.0399 -0.7214 1.2493 5 1 3.1153 -0.6128 1.3898 6 6 1.2239 -0.4090 2.5113 7 6 1.4345 -1.8986 2.8028 8 7 1.5730 -2.1119 1.3543 9 6 1.3599 -3.1313 0.4988 10 8 1.4839 -2.9566 -0.6980 11 7 1.0094 -4.3444 0.9700 12 6 0.7783 -5.4527 0.0400 13 6 0.3954 -6.7075 0.8271 14 6 1.5301 -7.0743 1.7857 15 6 -0.8808 -6.4383 1.6269 16 6 0.1571 -7.8473 -0.1294 17 1 0.2673 -7.6920 -1.1925 18 6 -0.2016 -9.0882 0.3525 19 7 -0.3353 -9.2775 1.6471 20 14 -0.4962 -10.5013 -0.8332 21 1 0.7422 -10.7624 -1.6098 22 1 -0.8668 -11.7196 -0.0691 23 1 -1.5979 -10.1455 -1.7632 24 1 -0.3634 0.4020 -0.9458 25 1 -0.3635 -1.0199 0.1249 26 1 -0.3633 0.6183 0.8209 27 1 1.8933 -0.5140 -0.8900 28 1 3.1301 1.4423 -0.0005 29 1 1.6768 1.9562 -0.8901 30 1 1.6768 1.9562 0.8899 31 1 1.7229 0.2605 3.2119 32 1 0.1864 -0.1374 2.3167 33 1 0.5575 -2.3838 3.2312 34 1 2.3470 -2.1069 3.3614 35 1 0.9101 -4.4838 1.9248 36 1 -0.0304 -5.1915 -0.6426 37 1 1.6874 -5.6442 -0.5300 38 1 1.7020 -6.2497 2.4776 39 1 1.2572 -7.9680 2.3469 40 1 2.4394 -7.2661 1.2159 41 1 -1.6893 -6.1770 0.9440 42 1 -1.1534 -7.3321 2.1881 43 1 -0.7090 -5.6137 2.3188 44 1 -0.5873 -10.1506 1.9862 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000332030929.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:40:09 Heat of formation + Delta-G solvation = -23.171332 kcal Electronic energy + Delta-G solvation = -21603.810970 eV Core-core repulsion = 18556.509689 eV Total energy + Delta-G solvation = -3047.301280 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.72738 -39.65663 -37.92740 -35.48062 -34.78368 -32.74091 -30.34120 -28.05611 -27.59296 -27.46324 -26.88817 -26.12221 -23.29418 -21.70219 -20.60546 -20.24230 -18.57125 -17.79613 -17.15758 -17.08420 -16.64391 -16.10531 -15.48110 -15.42123 -14.91247 -14.61449 -14.45927 -14.07494 -13.98152 -13.73970 -13.26240 -13.20155 -13.11010 -13.06309 -12.69212 -12.62904 -12.48288 -12.27909 -12.21697 -12.13076 -11.88001 -11.72985 -11.50948 -11.32270 -11.12278 -10.87953 -10.72646 -10.40953 -10.08944 -9.39353 -8.03207 -6.19185 1.43921 1.44340 1.51137 1.61779 2.24596 2.45184 3.09514 3.20131 3.51866 3.92043 4.05417 4.10462 4.25218 4.36496 4.44805 4.50027 4.62214 4.66782 4.67172 4.71555 4.79374 4.84379 4.96508 5.01894 5.02717 5.06831 5.09138 5.14460 5.16762 5.29264 5.32312 5.36827 5.48034 5.55182 5.63819 5.64537 5.65488 6.11975 6.18925 6.37833 6.42786 6.84145 7.15793 7.48405 7.68771 8.95817 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.038586 B = 0.004065 C = 0.003879 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 725.480597 B = 6886.221988 C = 7216.174616 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.104 4.104 3 C -0.133 4.133 4 C 0.147 3.853 5 H 0.099 0.901 6 C -0.131 4.131 7 C 0.092 3.908 8 N -0.672 5.672 9 C 0.721 3.279 10 O -0.640 6.640 11 N -0.727 5.727 12 C 0.170 3.830 13 C 0.052 3.948 14 C -0.116 4.116 15 C -0.116 4.116 16 C -0.532 4.532 17 H 0.043 0.957 18 C 0.030 3.970 19 N -0.899 5.899 20 Si 0.946 3.054 21 H -0.277 1.277 22 H -0.281 1.281 23 H -0.277 1.277 24 H 0.045 0.955 25 H 0.022 0.978 26 H 0.082 0.918 27 H 0.041 0.959 28 H 0.060 0.940 29 H 0.054 0.946 30 H 0.079 0.921 31 H 0.126 0.874 32 H 0.100 0.900 33 H 0.078 0.922 34 H 0.100 0.900 35 H 0.401 0.599 36 H 0.031 0.969 37 H 0.031 0.969 38 H 0.033 0.967 39 H 0.064 0.936 40 H 0.016 0.984 41 H 0.016 0.984 42 H 0.064 0.936 43 H 0.033 0.967 44 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.334 19.607 7.021 21.092 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.123 4.123 3 C -0.191 4.191 4 C 0.044 3.956 5 H 0.117 0.883 6 C -0.169 4.169 7 C -0.030 4.030 8 N -0.412 5.412 9 C 0.424 3.576 10 O -0.522 6.522 11 N -0.382 5.382 12 C 0.046 3.954 13 C 0.052 3.948 14 C -0.174 4.174 15 C -0.174 4.174 16 C -0.570 4.570 17 H 0.061 0.939 18 C -0.170 4.170 19 N -0.537 5.537 20 Si 0.773 3.227 21 H -0.203 1.203 22 H -0.206 1.206 23 H -0.203 1.203 24 H 0.064 0.936 25 H 0.042 0.958 26 H 0.101 0.899 27 H 0.059 0.941 28 H 0.079 0.921 29 H 0.073 0.927 30 H 0.098 0.902 31 H 0.144 0.856 32 H 0.118 0.882 33 H 0.097 0.903 34 H 0.118 0.882 35 H 0.238 0.762 36 H 0.049 0.951 37 H 0.050 0.950 38 H 0.052 0.948 39 H 0.083 0.917 40 H 0.035 0.965 41 H 0.035 0.965 42 H 0.083 0.917 43 H 0.052 0.948 44 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 3.333 19.366 6.142 20.588 hybrid contribution -0.202 -1.521 -0.749 1.707 sum 3.132 17.845 5.393 18.904 Atomic orbital electron populations 1.21749 0.95170 1.00305 1.01789 1.21222 0.96340 0.97416 0.97333 1.21700 1.01176 0.93312 1.02908 1.22921 0.99333 0.77348 0.95986 0.88344 1.23530 1.02013 0.95516 0.95806 1.23155 1.02855 0.96303 0.80698 1.48997 1.70051 1.12466 1.09674 1.15612 0.77983 0.79915 0.84069 1.90829 1.62126 1.83615 1.15641 1.45188 1.73864 1.08324 1.10801 1.21094 0.97740 0.85436 0.91173 1.18353 0.93185 0.89996 0.93293 1.21631 0.96678 1.00739 0.98354 1.21626 0.97394 0.99892 0.98453 1.21226 1.47496 0.95499 0.92787 0.93863 1.25448 0.94846 1.00216 0.96519 1.69896 1.47858 1.23496 1.12460 0.85799 0.78410 0.79166 0.79326 1.20288 1.20579 1.20273 0.93632 0.95828 0.89947 0.94059 0.92098 0.92665 0.90230 0.85629 0.88204 0.90342 0.88162 0.76243 0.95077 0.95014 0.94838 0.91688 0.96496 0.96504 0.91705 0.94840 0.92931 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.09 8.18 71.98 0.59 -2.50 16 2 C -0.10 -2.36 2.64 -10.80 -0.03 -2.39 16 3 C -0.13 -1.98 9.16 71.98 0.66 -1.32 16 4 C 0.15 2.99 3.84 41.79 0.16 3.15 16 5 H 0.10 1.75 8.14 -2.39 -0.02 1.73 16 6 C -0.13 -1.64 7.65 30.84 0.24 -1.40 16 7 C 0.09 1.57 8.28 83.09 0.69 2.26 16 8 N -0.67 -18.57 2.99 -852.37 -2.54 -21.12 16 9 C 0.72 27.93 8.21 179.05 1.47 29.40 16 10 O -0.64 -30.29 15.88 -3.99 -0.06 -30.35 16 11 N -0.73 -28.05 4.96 -478.52 -2.37 -30.42 16 12 C 0.17 7.84 4.50 86.38 0.39 8.23 16 13 C 0.05 2.53 0.50 -52.93 -0.03 2.51 16 14 C -0.12 -5.36 8.08 71.98 0.58 -4.77 16 15 C -0.12 -5.33 8.08 71.98 0.58 -4.75 16 16 C -0.53 -29.01 8.01 25.60 0.21 -28.80 16 17 H 0.04 2.41 7.74 -2.91 -0.02 2.39 16 18 C 0.03 1.59 5.15 84.65 0.44 2.02 16 19 N -0.90 -48.47 9.35 21.45 0.20 -48.27 16 20 Si 0.95 43.29 29.54 68.60 2.03 45.31 16 21 H -0.28 -12.61 7.11 99.48 0.71 -11.91 16 22 H -0.28 -12.43 7.11 99.48 0.71 -11.72 16 23 H -0.28 -12.60 7.11 99.48 0.71 -11.90 16 24 H 0.04 1.07 8.14 -2.38 -0.02 1.05 16 25 H 0.02 0.70 7.12 -2.39 -0.02 0.68 16 26 H 0.08 1.38 6.53 -2.38 -0.02 1.36 16 27 H 0.04 1.31 7.33 -2.38 -0.02 1.30 16 28 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 29 H 0.05 0.83 8.14 -2.38 -0.02 0.81 16 30 H 0.08 0.81 8.14 -2.39 -0.02 0.79 16 31 H 0.13 0.69 8.14 -2.39 -0.02 0.67 16 32 H 0.10 1.30 5.73 -2.39 -0.01 1.29 16 33 H 0.08 1.31 8.14 -2.39 -0.02 1.29 16 34 H 0.10 1.34 8.14 -2.39 -0.02 1.32 16 35 H 0.40 13.69 5.89 -92.71 -0.55 13.15 16 36 H 0.03 1.53 8.14 -2.38 -0.02 1.51 16 37 H 0.03 1.56 8.14 -2.39 -0.02 1.54 16 38 H 0.03 1.31 6.86 -2.38 -0.02 1.29 16 39 H 0.06 3.28 6.07 -2.39 -0.01 3.27 16 40 H 0.02 0.76 8.14 -2.38 -0.02 0.74 16 41 H 0.02 0.76 8.14 -2.38 -0.02 0.74 16 42 H 0.06 3.27 6.07 -2.39 -0.01 3.25 16 43 H 0.03 1.30 6.86 -2.39 -0.02 1.29 16 44 H 0.26 13.55 8.31 -92.71 -0.77 12.78 16 Total: -1.00 -67.33 338.55 3.61 -63.73 By element: Atomic # 1 Polarization: 19.09 SS G_CDS: 0.42 Total: 19.51 kcal Atomic # 6 Polarization: -4.33 SS G_CDS: 5.94 Total: 1.61 kcal Atomic # 7 Polarization: -95.09 SS G_CDS: -4.72 Total: -99.81 kcal Atomic # 8 Polarization: -30.29 SS G_CDS: -0.06 Total: -30.35 kcal Atomic # 14 Polarization: 43.29 SS G_CDS: 2.03 Total: 45.31 kcal Total: -67.33 3.61 -63.73 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000332030929.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.554 kcal (2) G-P(sol) polarization free energy of solvation -67.331 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.777 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.606 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.725 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.171 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds