Wall clock time and date at job start Mon Mar 30 2020 00:38:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53001 * 109.47200 * 2 1 4 4 C 1.53001 * 109.46817 * 119.99983 * 2 1 3 5 5 H 1.09001 * 108.44984 * 297.26101 * 4 2 1 6 6 C 1.52575 * 108.39062 * 179.64074 * 4 2 1 7 7 C 1.50872 * 109.35827 * 153.82126 * 6 4 2 8 8 C 1.54302 * 110.23411 * 91.79978 * 7 6 4 9 9 N 1.47603 * 111.94060 * 319.69829 * 8 7 6 10 10 C 1.34774 * 118.63793 * 137.77823 * 9 8 7 11 11 O 1.21588 * 120.00839 * 4.75888 * 10 9 8 12 12 N 1.34777 * 119.99629 * 184.75023 * 10 9 8 13 13 C 1.46501 * 120.00276 * 174.80072 * 12 10 9 14 14 C 1.50699 * 109.47774 * 180.02562 * 13 12 10 15 15 H 1.08001 * 119.99627 * 0.02562 * 14 13 12 16 16 C 1.37874 * 120.00433 * 179.97438 * 14 13 12 17 17 N 1.31517 * 119.99961 * 0.02562 * 16 14 13 18 18 Si 1.86793 * 120.00081 * 180.02562 * 16 14 13 19 19 H 1.48505 * 109.47189 * 270.00147 * 18 16 14 20 20 H 1.48505 * 109.47153 * 30.00249 * 18 16 14 21 21 H 1.48496 * 109.47362 * 150.00408 * 18 16 14 22 22 C 1.44568 * 122.71427 * 317.49700 * 9 8 7 23 23 C 1.47097 * 108.51421 * 54.95206 * 4 2 1 24 24 H 1.09002 * 109.46820 * 300.00344 * 1 2 3 25 25 H 1.08997 * 109.46609 * 60.00160 * 1 2 3 26 26 H 1.09002 * 109.47160 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.47330 * 239.99780 * 2 1 3 28 28 H 1.09003 * 109.46993 * 186.07305 * 3 2 1 29 29 H 1.08999 * 109.46781 * 306.07411 * 3 2 1 30 30 H 1.08998 * 109.46725 * 66.07367 * 3 2 1 31 31 H 1.08995 * 109.48396 * 273.78951 * 6 4 2 32 32 H 1.09004 * 109.48432 * 33.85478 * 6 4 2 33 33 H 1.09009 * 109.36553 * 212.07426 * 7 6 4 34 34 H 1.09003 * 109.37149 * 331.82372 * 7 6 4 35 35 H 1.08998 * 109.13863 * 199.00995 * 8 7 6 36 36 H 1.09000 * 108.95817 * 80.26946 * 8 7 6 37 37 H 0.97003 * 120.00463 * 354.80994 * 12 10 9 38 38 H 1.09000 * 109.47116 * 60.00307 * 13 12 10 39 39 H 1.09006 * 109.47233 * 300.00918 * 13 12 10 40 40 H 0.96998 * 119.99970 * 180.02562 * 17 16 14 41 41 H 1.09001 * 109.45103 * 211.02544 * 22 9 8 42 42 H 1.09004 * 109.45382 * 330.94606 * 22 9 8 43 43 H 1.08996 * 109.32768 * 63.63652 * 23 4 2 44 44 H 1.08996 * 109.18389 * 304.07083 * 23 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7213 1.2493 5 1 1.7084 -0.1668 2.1272 6 6 3.5654 -0.7148 1.2199 7 6 4.0932 -0.8046 2.6304 8 6 4.3268 -2.2792 3.0200 9 7 3.2501 -3.1581 2.5230 10 6 3.5839 -4.3493 1.9880 11 8 4.7424 -4.7184 2.0007 12 7 2.6335 -5.1316 1.4392 13 6 3.0098 -6.3723 0.7570 14 6 1.7713 -7.0549 0.2364 15 1 0.8009 -6.6090 0.3972 16 6 1.8770 -8.2483 -0.4460 17 7 3.0588 -8.7911 -0.6423 18 14 0.3419 -9.0940 -1.0920 19 1 -0.1865 -10.0187 -0.0570 20 1 -0.6869 -8.0730 -1.4153 21 1 0.6785 -9.8628 -2.3170 22 6 1.8521 -2.7966 2.5916 23 6 1.4404 -2.0639 1.2909 24 1 -0.3633 0.5139 0.8900 25 1 -0.3632 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 1.8934 -0.5139 -0.8900 28 1 3.1247 1.4444 -0.1087 29 1 1.5906 1.9867 -0.8306 30 1 1.7682 1.9239 0.9394 31 1 3.9216 -1.5684 0.6432 32 1 3.9163 0.2083 0.7583 33 1 5.0344 -0.2590 2.6997 34 1 3.3690 -0.3646 3.3161 35 1 4.3755 -2.3586 4.1060 36 1 5.2764 -2.6103 2.5997 37 1 1.7003 -4.8731 1.4957 38 1 3.5210 -7.0318 1.4583 39 1 3.6746 -6.1419 -0.0756 40 1 3.1332 -9.6304 -1.1227 41 1 1.2494 -3.6975 2.7069 42 1 1.6886 -2.1393 3.4457 43 1 1.7819 -2.6383 0.4298 44 1 0.3549 -1.9726 1.2562 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000334537706.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:38:33 Heat of formation + Delta-G solvation = -48.635282 kcal Electronic energy + Delta-G solvation = -21742.815381 eV Core-core repulsion = 18694.409901 eV Total energy + Delta-G solvation = -3048.405480 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.24567 -38.31974 -35.41987 -34.26935 -33.05682 -31.91827 -31.35362 -27.97504 -27.10826 -26.04264 -24.91384 -22.78638 -21.63207 -20.70160 -19.86258 -18.91458 -17.85510 -16.05833 -15.99349 -15.60377 -15.10114 -14.70356 -14.38324 -14.29533 -14.03696 -13.59672 -13.22589 -12.90847 -12.77106 -12.55761 -12.41484 -12.09693 -11.93626 -11.85134 -11.56404 -11.49917 -11.15164 -10.96441 -10.91123 -10.85974 -10.69813 -10.44923 -10.26303 -10.20184 -10.07926 -9.32884 -9.24842 -8.68539 -8.27504 -7.64362 -6.11859 -4.18114 3.26645 3.28955 3.33587 3.37203 3.97739 4.34466 4.51342 4.66266 4.72523 4.86084 4.99348 5.11158 5.21000 5.21709 5.24189 5.30515 5.39170 5.49504 5.53447 5.62852 5.71157 5.76267 5.78707 5.83586 5.91140 5.95890 6.02063 6.06914 6.16603 6.18473 6.27368 6.32105 6.41549 6.55316 6.99394 7.21223 7.57535 7.60707 7.62583 7.92758 8.07373 8.81020 8.98141 9.38604 9.53430 10.98478 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.019544 B = 0.005029 C = 0.004270 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1432.303003 B = 5566.404075 C = 6556.441617 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.098 4.098 3 C -0.147 4.147 4 C -0.073 4.073 5 H 0.062 0.938 6 C -0.117 4.117 7 C -0.128 4.128 8 C 0.132 3.868 9 N -0.630 5.630 10 C 0.691 3.309 11 O -0.602 6.602 12 N -0.729 5.729 13 C 0.266 3.734 14 C -0.540 4.540 15 H 0.061 0.939 16 C 0.064 3.936 17 N -0.886 5.886 18 Si 0.903 3.097 19 H -0.279 1.279 20 H -0.273 1.273 21 H -0.285 1.285 22 C 0.117 3.883 23 C -0.144 4.144 24 H 0.052 0.948 25 H 0.050 0.950 26 H 0.062 0.938 27 H 0.069 0.931 28 H 0.057 0.943 29 H 0.050 0.950 30 H 0.052 0.948 31 H 0.068 0.932 32 H 0.066 0.934 33 H 0.070 0.930 34 H 0.061 0.939 35 H 0.052 0.948 36 H 0.087 0.913 37 H 0.386 0.614 38 H 0.024 0.976 39 H 0.023 0.977 40 H 0.265 0.735 41 H 0.073 0.927 42 H 0.071 0.929 43 H 0.071 0.929 44 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.583 19.884 4.713 20.943 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.116 4.116 3 C -0.204 4.204 4 C -0.091 4.091 5 H 0.081 0.919 6 C -0.154 4.154 7 C -0.167 4.167 8 C 0.008 3.992 9 N -0.369 5.369 10 C 0.392 3.608 11 O -0.481 6.481 12 N -0.383 5.383 13 C 0.145 3.855 14 C -0.578 4.578 15 H 0.079 0.921 16 C -0.140 4.140 17 N -0.523 5.523 18 Si 0.730 3.270 19 H -0.205 1.205 20 H -0.198 1.198 21 H -0.210 1.210 22 C -0.008 4.008 23 C -0.182 4.182 24 H 0.071 0.929 25 H 0.069 0.931 26 H 0.081 0.919 27 H 0.088 0.912 28 H 0.076 0.924 29 H 0.069 0.931 30 H 0.071 0.929 31 H 0.086 0.914 32 H 0.084 0.916 33 H 0.089 0.911 34 H 0.080 0.920 35 H 0.070 0.930 36 H 0.105 0.895 37 H 0.221 0.779 38 H 0.042 0.958 39 H 0.041 0.959 40 H 0.075 0.925 41 H 0.091 0.909 42 H 0.090 0.910 43 H 0.090 0.910 44 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -3.633 19.423 4.611 20.291 hybrid contribution -1.305 -0.387 -0.375 1.412 sum -4.938 19.036 4.235 20.117 Atomic orbital electron populations 1.21950 0.95482 1.02081 1.01280 1.21258 0.95596 0.95961 0.98789 1.21918 1.01061 0.96140 1.01329 1.20073 0.95242 0.96207 0.97584 0.91945 1.21227 0.94927 1.02351 0.96896 1.21817 1.01400 0.96129 0.97323 1.21622 0.91177 0.88594 0.97763 1.46883 1.06010 1.17913 1.66057 1.16189 0.85577 0.80330 0.78667 1.90846 1.18610 1.73820 1.64840 1.45870 1.07987 1.25618 1.58792 1.18957 0.96068 0.78904 0.91584 1.21216 0.92773 1.06852 1.36965 0.92070 1.24932 0.96396 0.96881 0.95761 1.69983 1.22702 1.18961 1.40679 0.86435 0.82623 0.79525 0.78429 1.20499 1.19791 1.21043 1.21384 0.82379 0.99596 0.97432 1.21534 1.00865 0.96516 0.99329 0.92926 0.93109 0.91931 0.91238 0.92394 0.93115 0.92918 0.91366 0.91560 0.91123 0.92040 0.92985 0.89492 0.77940 0.95799 0.95935 0.92517 0.90865 0.91036 0.90993 0.90521 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.33 8.65 37.16 0.32 -1.01 16 2 C -0.10 -0.94 2.47 -90.62 -0.22 -1.16 16 3 C -0.15 -1.23 8.76 37.16 0.33 -0.91 16 4 C -0.07 -0.74 1.31 -93.67 -0.12 -0.86 16 5 H 0.06 0.59 7.36 -51.93 -0.38 0.21 16 6 C -0.12 -1.30 4.83 -28.02 -0.14 -1.43 16 7 C -0.13 -1.33 5.71 -27.12 -0.15 -1.49 16 8 C 0.13 1.82 6.11 -2.76 -0.02 1.80 16 9 N -0.63 -10.05 2.23 -178.05 -0.40 -10.44 16 10 C 0.69 14.85 8.19 -86.92 -0.71 14.14 16 11 O -0.60 -15.49 15.66 5.29 0.08 -15.41 16 12 N -0.73 -16.14 5.38 -66.41 -0.36 -16.49 16 13 C 0.27 7.27 5.43 -5.19 -0.03 7.24 16 14 C -0.54 -14.86 9.28 -34.44 -0.32 -15.18 16 15 H 0.06 1.58 7.60 -52.49 -0.40 1.18 16 16 C 0.06 1.79 5.46 -17.82 -0.10 1.69 16 17 N -0.89 -26.43 13.29 55.43 0.74 -25.69 16 18 Si 0.90 21.03 29.54 -169.99 -5.02 16.01 16 19 H -0.28 -6.42 7.11 56.52 0.40 -6.01 16 20 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 21 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 22 C 0.12 1.47 5.07 -4.09 -0.02 1.45 16 23 C -0.14 -1.66 4.59 -28.58 -0.13 -1.79 16 24 H 0.05 0.43 8.14 -51.93 -0.42 0.00 16 25 H 0.05 0.43 8.14 -51.93 -0.42 0.00 16 26 H 0.06 0.58 6.20 -51.93 -0.32 0.26 16 27 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 28 H 0.06 0.48 6.21 -51.93 -0.32 0.16 16 29 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 30 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 31 H 0.07 0.98 7.49 -51.93 -0.39 0.59 16 32 H 0.07 0.66 5.55 -51.93 -0.29 0.37 16 33 H 0.07 0.64 8.14 -51.92 -0.42 0.22 16 34 H 0.06 0.57 7.32 -51.93 -0.38 0.19 16 35 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 36 H 0.09 1.40 7.01 -51.93 -0.36 1.04 16 37 H 0.39 7.46 5.97 -40.82 -0.24 7.22 16 38 H 0.02 0.73 8.14 -51.93 -0.42 0.30 16 39 H 0.02 0.68 8.14 -51.93 -0.42 0.26 16 40 H 0.27 7.41 8.31 -40.82 -0.34 7.07 16 41 H 0.07 0.95 6.37 -51.93 -0.33 0.61 16 42 H 0.07 0.75 8.07 -51.93 -0.42 0.33 16 43 H 0.07 1.04 8.14 -51.93 -0.42 0.61 16 44 H 0.08 0.77 5.86 -51.93 -0.30 0.47 16 LS Contribution 334.01 15.07 5.03 5.03 Total: -1.00 -32.13 334.01 -8.75 -40.87 By element: Atomic # 1 Polarization: 11.16 SS G_CDS: -7.51 Total: 3.65 kcal Atomic # 6 Polarization: 3.79 SS G_CDS: -1.32 Total: 2.48 kcal Atomic # 7 Polarization: -52.61 SS G_CDS: -0.02 Total: -52.63 kcal Atomic # 8 Polarization: -15.49 SS G_CDS: 0.08 Total: -15.41 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -5.02 Total: 16.01 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -32.13 -8.75 -40.87 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000334537706.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.765 kcal (2) G-P(sol) polarization free energy of solvation -32.125 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.890 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.745 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.871 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.635 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds