Wall clock time and date at job start Mon Mar 30 2020 00:38:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53001 * 109.47200 * 2 1 4 4 C 1.53001 * 109.46817 * 119.99983 * 2 1 3 5 5 H 1.09001 * 108.44984 * 297.26101 * 4 2 1 6 6 C 1.52575 * 108.39062 * 179.64074 * 4 2 1 7 7 C 1.50872 * 109.35827 * 153.82126 * 6 4 2 8 8 C 1.54302 * 110.23411 * 91.79978 * 7 6 4 9 9 N 1.47603 * 111.94060 * 319.69829 * 8 7 6 10 10 C 1.34774 * 118.63793 * 137.77823 * 9 8 7 11 11 O 1.21588 * 120.00839 * 4.75888 * 10 9 8 12 12 N 1.34777 * 119.99629 * 184.75023 * 10 9 8 13 13 C 1.46501 * 120.00276 * 174.80072 * 12 10 9 14 14 C 1.50699 * 109.47774 * 180.02562 * 13 12 10 15 15 H 1.08001 * 119.99627 * 0.02562 * 14 13 12 16 16 C 1.37874 * 120.00433 * 179.97438 * 14 13 12 17 17 N 1.31517 * 119.99961 * 0.02562 * 16 14 13 18 18 Si 1.86793 * 120.00081 * 180.02562 * 16 14 13 19 19 H 1.48505 * 109.47189 * 270.00147 * 18 16 14 20 20 H 1.48505 * 109.47153 * 30.00249 * 18 16 14 21 21 H 1.48496 * 109.47362 * 150.00408 * 18 16 14 22 22 C 1.44568 * 122.71427 * 317.49700 * 9 8 7 23 23 C 1.47097 * 108.51421 * 54.95206 * 4 2 1 24 24 H 1.09002 * 109.46820 * 300.00344 * 1 2 3 25 25 H 1.08997 * 109.46609 * 60.00160 * 1 2 3 26 26 H 1.09002 * 109.47160 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.47330 * 239.99780 * 2 1 3 28 28 H 1.09003 * 109.46993 * 186.07305 * 3 2 1 29 29 H 1.08999 * 109.46781 * 306.07411 * 3 2 1 30 30 H 1.08998 * 109.46725 * 66.07367 * 3 2 1 31 31 H 1.08995 * 109.48396 * 273.78951 * 6 4 2 32 32 H 1.09004 * 109.48432 * 33.85478 * 6 4 2 33 33 H 1.09009 * 109.36553 * 212.07426 * 7 6 4 34 34 H 1.09003 * 109.37149 * 331.82372 * 7 6 4 35 35 H 1.08998 * 109.13863 * 199.00995 * 8 7 6 36 36 H 1.09000 * 108.95817 * 80.26946 * 8 7 6 37 37 H 0.97003 * 120.00463 * 354.80994 * 12 10 9 38 38 H 1.09000 * 109.47116 * 60.00307 * 13 12 10 39 39 H 1.09006 * 109.47233 * 300.00918 * 13 12 10 40 40 H 0.96998 * 119.99970 * 180.02562 * 17 16 14 41 41 H 1.09001 * 109.45103 * 211.02544 * 22 9 8 42 42 H 1.09004 * 109.45382 * 330.94606 * 22 9 8 43 43 H 1.08996 * 109.32768 * 63.63652 * 23 4 2 44 44 H 1.08996 * 109.18389 * 304.07083 * 23 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7213 1.2493 5 1 1.7084 -0.1668 2.1272 6 6 3.5654 -0.7148 1.2199 7 6 4.0932 -0.8046 2.6304 8 6 4.3268 -2.2792 3.0200 9 7 3.2501 -3.1581 2.5230 10 6 3.5839 -4.3493 1.9880 11 8 4.7424 -4.7184 2.0007 12 7 2.6335 -5.1316 1.4392 13 6 3.0098 -6.3723 0.7570 14 6 1.7713 -7.0549 0.2364 15 1 0.8009 -6.6090 0.3972 16 6 1.8770 -8.2483 -0.4460 17 7 3.0588 -8.7911 -0.6423 18 14 0.3419 -9.0940 -1.0920 19 1 -0.1865 -10.0187 -0.0570 20 1 -0.6869 -8.0730 -1.4153 21 1 0.6785 -9.8628 -2.3170 22 6 1.8521 -2.7966 2.5916 23 6 1.4404 -2.0639 1.2909 24 1 -0.3633 0.5139 0.8900 25 1 -0.3632 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 1.8934 -0.5139 -0.8900 28 1 3.1247 1.4444 -0.1087 29 1 1.5906 1.9867 -0.8306 30 1 1.7682 1.9239 0.9394 31 1 3.9216 -1.5684 0.6432 32 1 3.9163 0.2083 0.7583 33 1 5.0344 -0.2590 2.6997 34 1 3.3690 -0.3646 3.3161 35 1 4.3755 -2.3586 4.1060 36 1 5.2764 -2.6103 2.5997 37 1 1.7003 -4.8731 1.4957 38 1 3.5210 -7.0318 1.4583 39 1 3.6746 -6.1419 -0.0756 40 1 3.1332 -9.6304 -1.1227 41 1 1.2494 -3.6975 2.7069 42 1 1.6886 -2.1393 3.4457 43 1 1.7819 -2.6383 0.4298 44 1 0.3549 -1.9726 1.2562 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000334537706.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:38:32 Heat of formation + Delta-G solvation = -68.583421 kcal Electronic energy + Delta-G solvation = -21743.680397 eV Core-core repulsion = 18694.409901 eV Total energy + Delta-G solvation = -3049.270496 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.59629 -39.58300 -36.66745 -36.20112 -34.63899 -33.52325 -32.34741 -29.46484 -28.40931 -27.16733 -25.97722 -24.68852 -22.85243 -21.83257 -20.71427 -20.53877 -19.32250 -18.03308 -17.46888 -16.86030 -16.57208 -16.10772 -15.66930 -15.46357 -15.16758 -14.98298 -14.50905 -14.34396 -13.95020 -13.79389 -13.73252 -13.55442 -13.14417 -12.89947 -12.82475 -12.72147 -12.61691 -12.38896 -12.19719 -12.08585 -11.75548 -11.71177 -11.47250 -11.31284 -11.16531 -10.94501 -10.90948 -10.79720 -9.98610 -9.31473 -8.28249 -6.45058 1.42763 1.46009 1.56914 1.85037 2.24957 2.39026 3.06576 3.25139 3.69728 3.79913 3.89509 4.06279 4.18574 4.27257 4.40156 4.43215 4.49266 4.59161 4.74116 4.78995 4.87458 4.91934 4.94332 4.96407 5.07334 5.09200 5.14299 5.15835 5.23486 5.26068 5.31195 5.35059 5.41077 5.48565 5.50080 5.60002 5.66718 5.68965 5.84569 5.85852 6.16709 6.66397 7.22263 7.26029 7.72536 8.84372 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.019544 B = 0.005029 C = 0.004270 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1432.303003 B = 5566.404075 C = 6556.441617 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.097 4.097 3 C -0.144 4.144 4 C -0.071 4.071 5 H 0.088 0.912 6 C -0.116 4.116 7 C -0.116 4.116 8 C 0.125 3.875 9 N -0.615 5.615 10 C 0.685 3.315 11 O -0.653 6.653 12 N -0.723 5.723 13 C 0.286 3.714 14 C -0.553 4.553 15 H 0.082 0.918 16 C 0.005 3.995 17 N -0.931 5.931 18 Si 0.986 3.014 19 H -0.270 1.270 20 H -0.255 1.255 21 H -0.283 1.283 22 C 0.108 3.892 23 C -0.137 4.137 24 H 0.067 0.933 25 H 0.052 0.948 26 H 0.055 0.945 27 H 0.045 0.955 28 H 0.055 0.945 29 H 0.053 0.947 30 H 0.065 0.935 31 H 0.025 0.975 32 H 0.081 0.919 33 H 0.088 0.912 34 H 0.090 0.910 35 H 0.070 0.930 36 H 0.053 0.947 37 H 0.402 0.598 38 H -0.018 1.018 39 H -0.019 1.019 40 H 0.269 0.731 41 H 0.070 0.930 42 H 0.110 0.890 43 H 0.035 0.965 44 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.512 22.195 5.688 24.112 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.116 4.116 3 C -0.201 4.201 4 C -0.089 4.089 5 H 0.106 0.894 6 C -0.153 4.153 7 C -0.154 4.154 8 C 0.003 3.997 9 N -0.352 5.352 10 C 0.386 3.614 11 O -0.536 6.536 12 N -0.378 5.378 13 C 0.163 3.837 14 C -0.591 4.591 15 H 0.100 0.900 16 C -0.195 4.195 17 N -0.570 5.570 18 Si 0.809 3.191 19 H -0.195 1.195 20 H -0.179 1.179 21 H -0.209 1.209 22 C -0.015 4.015 23 C -0.175 4.175 24 H 0.086 0.914 25 H 0.071 0.929 26 H 0.074 0.926 27 H 0.063 0.937 28 H 0.074 0.926 29 H 0.072 0.928 30 H 0.085 0.915 31 H 0.044 0.956 32 H 0.100 0.900 33 H 0.106 0.894 34 H 0.109 0.891 35 H 0.088 0.912 36 H 0.072 0.928 37 H 0.239 0.761 38 H 0.000 1.000 39 H -0.001 1.001 40 H 0.078 0.922 41 H 0.088 0.912 42 H 0.128 0.872 43 H 0.054 0.946 44 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -6.608 21.815 5.618 23.476 hybrid contribution -0.323 -1.041 -0.655 1.271 sum -6.931 20.774 4.963 22.455 Atomic orbital electron populations 1.21929 0.94592 1.01886 1.02179 1.21227 0.96326 0.96566 0.97456 1.21885 1.00871 0.95113 1.02240 1.20066 0.94305 0.95584 0.98922 0.89388 1.21230 0.95871 1.01231 0.97000 1.21789 1.03192 0.93335 0.97102 1.21868 0.89099 0.90297 0.98478 1.46925 1.08270 1.15883 1.64073 1.16443 0.84530 0.81727 0.78676 1.90802 1.20690 1.75391 1.66748 1.45462 1.09043 1.24461 1.58825 1.18375 0.95596 0.80234 0.89501 1.21559 0.93182 1.07289 1.37072 0.90011 1.26070 1.00178 0.97580 0.95655 1.70152 1.25728 1.19603 1.41519 0.85139 0.77957 0.78390 0.77609 1.19494 1.17858 1.20898 1.21731 0.79841 1.00443 0.99479 1.21494 1.02247 0.96673 0.97110 0.91409 0.92875 0.92629 0.93673 0.92643 0.92763 0.91548 0.95623 0.90049 0.89361 0.89143 0.91162 0.92821 0.76078 0.99955 1.00078 0.92239 0.91174 0.87218 0.94625 0.88293 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.23 8.65 71.98 0.62 -1.61 16 2 C -0.10 -1.68 2.47 -10.79 -0.03 -1.70 16 3 C -0.14 -2.01 8.76 71.98 0.63 -1.38 16 4 C -0.07 -1.26 1.31 -12.77 -0.02 -1.27 16 5 H 0.09 1.20 7.36 -2.39 -0.02 1.19 16 6 C -0.12 -2.41 4.83 29.76 0.14 -2.27 16 7 C -0.12 -2.09 5.71 30.34 0.17 -1.92 16 8 C 0.12 3.35 6.11 86.61 0.53 3.88 16 9 N -0.61 -19.52 2.23 -835.50 -1.86 -21.38 16 10 C 0.69 30.84 8.19 179.06 1.47 32.30 16 11 O -0.65 -35.95 15.66 -3.99 -0.06 -36.01 16 12 N -0.72 -33.40 5.38 -482.29 -2.60 -35.99 16 13 C 0.29 16.61 5.43 85.63 0.47 17.08 16 14 C -0.55 -31.05 9.28 25.60 0.24 -30.81 16 15 H 0.08 4.15 7.60 -2.91 -0.02 4.13 16 16 C 0.00 0.26 5.46 84.65 0.46 0.73 16 17 N -0.93 -57.45 13.29 21.45 0.28 -57.17 16 18 Si 0.99 42.95 29.54 68.60 2.03 44.98 16 19 H -0.27 -11.31 7.11 99.48 0.71 -10.60 16 20 H -0.25 -10.29 7.11 99.48 0.71 -9.58 16 21 H -0.28 -12.21 7.11 99.48 0.71 -11.50 16 22 C 0.11 2.48 5.07 87.38 0.44 2.92 16 23 C -0.14 -2.93 4.59 29.40 0.13 -2.80 16 24 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 25 H 0.05 0.77 8.14 -2.39 -0.02 0.75 16 26 H 0.05 0.90 6.20 -2.39 -0.01 0.89 16 27 H 0.04 0.99 8.14 -2.39 -0.02 0.97 16 28 H 0.05 0.80 6.21 -2.39 -0.01 0.78 16 29 H 0.05 0.72 8.14 -2.39 -0.02 0.70 16 30 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 31 H 0.02 0.75 7.49 -2.39 -0.02 0.73 16 32 H 0.08 1.46 5.55 -2.39 -0.01 1.44 16 33 H 0.09 1.34 8.14 -2.38 -0.02 1.32 16 34 H 0.09 1.18 7.32 -2.39 -0.02 1.17 16 35 H 0.07 1.65 8.14 -2.39 -0.02 1.63 16 36 H 0.05 1.81 7.01 -2.39 -0.02 1.79 16 37 H 0.40 15.73 5.97 -92.71 -0.55 15.17 16 38 H -0.02 -1.14 8.14 -2.39 -0.02 -1.16 16 39 H -0.02 -1.22 8.14 -2.38 -0.02 -1.24 16 40 H 0.27 15.42 8.31 -92.71 -0.77 14.65 16 41 H 0.07 1.68 6.37 -2.39 -0.02 1.66 16 42 H 0.11 1.78 8.07 -2.39 -0.02 1.76 16 43 H 0.03 1.03 8.14 -2.39 -0.02 1.01 16 44 H 0.10 1.71 5.86 -2.39 -0.01 1.70 16 Total: -1.00 -74.97 334.01 3.47 -71.50 By element: Atomic # 1 Polarization: 20.49 SS G_CDS: 0.42 Total: 20.91 kcal Atomic # 6 Polarization: 7.89 SS G_CDS: 5.27 Total: 13.16 kcal Atomic # 7 Polarization: -110.36 SS G_CDS: -4.17 Total: -114.54 kcal Atomic # 8 Polarization: -35.95 SS G_CDS: -0.06 Total: -36.01 kcal Atomic # 14 Polarization: 42.95 SS G_CDS: 2.03 Total: 44.98 kcal Total: -74.97 3.47 -71.50 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000334537706.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.917 kcal (2) G-P(sol) polarization free energy of solvation -74.974 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.057 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.474 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.500 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.583 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds