Wall clock time and date at job start Mon Mar 30 2020 01:05:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53002 * 109.47308 * 2 1 4 4 C 1.52999 * 109.47419 * 119.99866 * 2 1 3 5 5 N 1.46900 * 109.47438 * 182.30270 * 4 2 1 6 6 C 1.46900 * 110.99890 * 169.71629 * 5 4 2 7 7 C 1.50702 * 109.46757 * 196.37153 * 6 5 4 8 8 O 1.21286 * 120.00643 * 5.50280 * 7 6 5 9 9 N 1.34779 * 119.99517 * 185.49799 * 7 6 5 10 10 C 1.37102 * 119.99866 * 180.02562 * 9 7 6 11 11 H 1.08004 * 119.99868 * 0.02562 * 10 9 7 12 12 C 1.38950 * 120.00043 * 179.97438 * 10 9 7 13 13 N 1.31409 * 120.00097 * 0.02562 * 12 10 9 14 14 Si 1.86801 * 119.99949 * 180.02562 * 12 10 9 15 15 H 1.48496 * 109.47224 * 90.00160 * 14 12 10 16 16 H 1.48492 * 109.47067 * 210.00456 * 14 12 10 17 17 H 1.48504 * 109.46912 * 330.00326 * 14 12 10 18 18 C 1.46896 * 111.00278 * 293.67166 * 5 4 2 19 19 C 1.54267 * 110.03145 * 78.97531 * 18 5 4 20 20 C 1.54965 * 104.16244 * 217.13757 * 19 18 5 21 21 C 1.54885 * 102.77516 * 37.89022 * 20 19 18 22 22 C 1.53882 * 110.03117 * 321.76290 * 18 5 4 23 23 H 1.09000 * 109.47001 * 299.99920 * 1 2 3 24 24 H 1.09001 * 109.46903 * 59.99798 * 1 2 3 25 25 H 1.08993 * 109.46814 * 179.97438 * 1 2 3 26 26 H 1.09002 * 109.47509 * 240.00023 * 2 1 3 27 27 H 1.08997 * 109.47595 * 179.97438 * 3 2 1 28 28 H 1.09001 * 109.47304 * 299.99957 * 3 2 1 29 29 H 1.09000 * 109.47025 * 60.00094 * 3 2 1 30 30 H 1.09005 * 109.46780 * 62.30633 * 4 2 1 31 31 H 1.08997 * 109.47202 * 302.30656 * 4 2 1 32 32 H 1.08996 * 109.47307 * 316.37370 * 6 5 4 33 33 H 1.08999 * 109.46846 * 76.37668 * 6 5 4 34 34 H 0.96991 * 120.00574 * 0.02562 * 9 7 6 35 35 H 0.96998 * 120.00291 * 180.02562 * 13 12 10 36 36 H 1.08995 * 110.01971 * 200.36982 * 18 5 4 37 37 H 1.09004 * 110.49003 * 335.78719 * 19 18 5 38 38 H 1.09002 * 110.48438 * 98.43078 * 19 18 5 39 39 H 1.08995 * 110.71850 * 279.57747 * 20 19 18 40 40 H 1.09002 * 110.92453 * 156.30163 * 20 19 18 41 41 H 1.09006 * 110.48431 * 203.40504 * 21 20 19 42 42 H 1.08999 * 110.60059 * 80.82022 * 21 20 19 43 43 H 1.09000 * 110.02727 * 238.56787 * 22 18 5 44 44 H 1.08995 * 110.03059 * 359.97438 * 22 18 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0401 -0.7212 1.2492 5 7 3.5080 -0.6732 1.2774 6 6 4.0251 -1.1360 2.5721 7 6 5.4620 -0.7068 2.7216 8 8 5.9721 0.0067 1.8838 9 7 6.1801 -1.1157 3.7863 10 6 7.4871 -0.7247 3.9226 11 1 7.9411 -0.0888 3.1770 12 6 8.2273 -1.1458 5.0205 13 7 7.6748 -1.9192 5.9280 14 14 10.0079 -0.6126 5.2066 15 1 10.0663 0.6605 5.9687 16 1 10.7650 -1.6613 5.9359 17 1 10.6078 -0.4131 3.8629 18 6 4.0816 -1.4528 0.1723 19 6 4.0108 -0.6425 -1.1385 20 6 3.6943 -1.7030 -2.2232 21 6 2.7112 -2.6537 -1.4961 22 6 3.2559 -2.7313 -0.0549 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 -1.0276 -0.0005 26 1 1.8934 -0.5138 -0.8900 27 1 3.1300 1.4426 0.0005 28 1 1.6768 1.9564 -0.8900 29 1 1.6767 1.9563 0.8900 30 1 1.7109 -1.7602 1.2288 31 1 1.6434 -0.2318 2.1387 32 1 3.4309 -0.7028 3.3766 33 1 3.9639 -2.2233 2.6201 34 1 5.7723 -1.6864 4.4561 35 1 8.1914 -2.2128 6.6947 36 1 5.1165 -1.7115 0.3960 37 1 3.2136 0.0991 -1.0861 38 1 4.9676 -0.1616 -1.3418 39 1 4.5989 -2.2347 -2.5182 40 1 3.2182 -1.2437 -3.0895 41 1 2.7200 -3.6397 -1.9609 42 1 1.7030 -2.2397 -1.5011 43 1 3.8905 -3.6104 0.0576 44 1 2.4300 -2.7735 0.6550 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000343088845.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:05:59 Heat of formation + Delta-G solvation = -22.960470 kcal Electronic energy + Delta-G solvation = -21986.152245 eV Core-core repulsion = 18938.860108 eV Total energy + Delta-G solvation = -3047.292137 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.10794 -37.81801 -35.30316 -34.20121 -33.51843 -31.14166 -28.89806 -28.05459 -27.06996 -26.78057 -24.81947 -23.06185 -21.06340 -20.01158 -19.18378 -18.66408 -17.75526 -16.64506 -16.00264 -15.42429 -14.77578 -14.40780 -14.22894 -13.94691 -13.78655 -13.70278 -13.50252 -12.88344 -12.50837 -12.33897 -11.98842 -11.95422 -11.61507 -11.48721 -11.34748 -11.08344 -11.02182 -10.91545 -10.81638 -10.70193 -10.62316 -10.45492 -10.35772 -10.16113 -10.02047 -9.61872 -9.41696 -8.33837 -7.89431 -7.68905 -6.36134 -3.76502 3.21251 3.29246 3.35167 4.00103 4.04192 4.28937 4.81742 4.83062 4.92274 4.97424 5.08492 5.20043 5.26778 5.32929 5.46973 5.63465 5.66458 5.69293 5.72408 5.76088 5.81712 5.87451 5.89218 5.91697 5.99491 6.02739 6.05471 6.09308 6.13717 6.19404 6.30748 6.33805 6.40170 6.46056 6.61308 6.70152 6.76841 7.47776 7.55227 7.60311 8.13174 8.69329 9.24816 9.62249 10.15012 10.81964 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.027954 B = 0.004569 C = 0.004384 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1001.417429 B = 6127.035593 C = 6385.924620 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.112 4.112 3 C -0.145 4.145 4 C 0.049 3.951 5 N -0.503 5.503 6 C 0.044 3.956 7 C 0.446 3.554 8 O -0.573 6.573 9 N -0.569 5.569 10 C -0.296 4.296 11 H 0.102 0.898 12 C 0.021 3.979 13 N -0.904 5.904 14 Si 0.928 3.072 15 H -0.279 1.279 16 H -0.284 1.284 17 H -0.270 1.270 18 C 0.090 3.910 19 C -0.139 4.139 20 C -0.128 4.128 21 C -0.120 4.120 22 C -0.171 4.171 23 H 0.052 0.948 24 H 0.052 0.948 25 H 0.049 0.951 26 H 0.095 0.905 27 H 0.081 0.919 28 H 0.041 0.959 29 H 0.049 0.951 30 H 0.044 0.956 31 H 0.068 0.932 32 H 0.085 0.915 33 H 0.046 0.954 34 H 0.391 0.609 35 H 0.270 0.730 36 H 0.086 0.914 37 H 0.104 0.896 38 H 0.065 0.935 39 H 0.063 0.937 40 H 0.061 0.939 41 H 0.058 0.942 42 H 0.065 0.935 43 H 0.060 0.940 44 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.570 -1.110 -10.895 17.438 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.130 4.130 3 C -0.202 4.202 4 C -0.079 4.079 5 N -0.225 5.225 6 C -0.088 4.088 7 C 0.231 3.769 8 O -0.456 6.456 9 N -0.207 5.207 10 C -0.425 4.425 11 H 0.120 0.880 12 C -0.180 4.180 13 N -0.546 5.546 14 Si 0.756 3.244 15 H -0.205 1.205 16 H -0.210 1.210 17 H -0.195 1.195 18 C -0.018 4.018 19 C -0.177 4.177 20 C -0.166 4.166 21 C -0.158 4.158 22 C -0.210 4.210 23 H 0.071 0.929 24 H 0.071 0.929 25 H 0.068 0.932 26 H 0.112 0.888 27 H 0.099 0.901 28 H 0.060 0.940 29 H 0.068 0.932 30 H 0.062 0.938 31 H 0.086 0.914 32 H 0.104 0.896 33 H 0.064 0.936 34 H 0.224 0.776 35 H 0.080 0.920 36 H 0.105 0.895 37 H 0.121 0.879 38 H 0.084 0.916 39 H 0.081 0.919 40 H 0.080 0.920 41 H 0.076 0.924 42 H 0.083 0.917 43 H 0.079 0.921 44 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -12.974 -0.205 -11.328 17.225 hybrid contribution 0.439 -1.088 0.923 1.492 sum -12.535 -1.292 -10.405 16.342 Atomic orbital electron populations 1.21838 0.95902 1.01140 1.01550 1.21625 0.94444 0.97572 0.99361 1.21857 1.03335 0.94724 1.00295 1.22411 0.88214 0.98803 0.98450 1.61774 1.04858 1.54235 1.01671 1.21874 0.96494 0.98194 0.92201 1.19796 0.87339 0.85538 0.84213 1.90517 1.71784 1.40243 1.43038 1.41885 1.11766 1.45644 1.21396 1.19682 0.86721 1.28625 1.07512 0.88023 1.25229 1.00308 0.96853 0.95615 1.69612 1.37760 1.35247 1.12006 0.85884 0.81979 0.78066 0.78514 1.20464 1.21014 1.19481 1.22267 0.98615 0.89790 0.91163 1.23087 1.03502 0.98404 0.92675 1.22533 0.98957 0.97292 0.97776 1.22337 0.98838 0.99185 0.95451 1.23048 1.00820 0.99638 0.97499 0.92907 0.92850 0.93187 0.88770 0.90055 0.93989 0.93229 0.93839 0.91368 0.89641 0.93604 0.77628 0.91999 0.89538 0.87861 0.91613 0.91856 0.92001 0.92363 0.91671 0.92101 0.90479 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.39 9.19 37.16 0.34 -1.05 16 2 C -0.11 -1.29 2.26 -90.62 -0.21 -1.49 16 3 C -0.15 -1.83 7.99 37.16 0.30 -1.53 16 4 C 0.05 0.64 3.97 -3.82 -0.02 0.62 16 5 N -0.50 -8.27 3.24 -226.74 -0.73 -9.00 16 6 C 0.04 0.80 5.40 -4.97 -0.03 0.77 16 7 C 0.45 10.64 7.17 -10.98 -0.08 10.56 16 8 O -0.57 -15.56 15.05 5.55 0.08 -15.48 16 9 N -0.57 -14.63 5.29 -10.96 -0.06 -14.69 16 10 C -0.30 -8.34 9.68 -14.93 -0.14 -8.49 16 11 H 0.10 3.01 7.16 -52.48 -0.38 2.63 16 12 C 0.02 0.57 5.50 -17.47 -0.10 0.47 16 13 N -0.90 -24.95 13.05 55.50 0.72 -24.22 16 14 Si 0.93 21.35 29.55 -169.99 -5.02 16.33 16 15 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 16 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 17 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 18 C 0.09 1.45 2.39 -66.59 -0.16 1.29 16 19 C -0.14 -2.00 5.46 -25.03 -0.14 -2.14 16 20 C -0.13 -1.49 6.70 -24.70 -0.17 -1.66 16 21 C -0.12 -1.33 6.19 -25.07 -0.16 -1.49 16 22 C -0.17 -2.25 5.63 -25.61 -0.14 -2.39 16 23 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 24 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 25 H 0.05 0.44 8.14 -51.93 -0.42 0.01 16 26 H 0.09 1.09 2.65 -51.93 -0.14 0.95 16 27 H 0.08 1.24 6.17 -51.93 -0.32 0.92 16 28 H 0.04 0.46 8.14 -51.93 -0.42 0.04 16 29 H 0.05 0.63 8.14 -51.93 -0.42 0.20 16 30 H 0.04 0.54 5.09 -51.93 -0.26 0.27 16 31 H 0.07 0.88 7.85 -51.93 -0.41 0.47 16 32 H 0.09 1.42 7.80 -51.93 -0.40 1.02 16 33 H 0.05 0.77 7.86 -51.93 -0.41 0.37 16 34 H 0.39 9.65 7.90 -40.82 -0.32 9.33 16 35 H 0.27 7.06 8.31 -40.82 -0.34 6.72 16 36 H 0.09 1.71 6.73 -51.93 -0.35 1.36 16 37 H 0.10 1.40 2.43 -51.93 -0.13 1.27 16 38 H 0.07 1.06 8.14 -51.93 -0.42 0.63 16 39 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 40 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 41 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 42 H 0.06 0.66 6.78 -51.93 -0.35 0.31 16 43 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 44 H 0.08 0.97 4.83 -51.93 -0.25 0.72 16 LS Contribution 328.01 15.07 4.94 4.94 Total: -1.00 -30.10 328.01 -7.84 -37.94 By element: Atomic # 1 Polarization: 17.79 SS G_CDS: -7.08 Total: 10.70 kcal Atomic # 6 Polarization: -5.82 SS G_CDS: -0.69 Total: -6.51 kcal Atomic # 7 Polarization: -47.85 SS G_CDS: -0.07 Total: -47.92 kcal Atomic # 8 Polarization: -15.56 SS G_CDS: 0.08 Total: -15.48 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -5.02 Total: 16.33 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -30.10 -7.84 -37.94 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343088845.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.978 kcal (2) G-P(sol) polarization free energy of solvation -30.102 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.125 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.836 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.938 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.960 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds