Wall clock time and date at job start Mon Mar 30 2020 01:05:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53002 * 109.47308 * 2 1 4 4 C 1.52999 * 109.47419 * 119.99866 * 2 1 3 5 5 N 1.46900 * 109.47438 * 182.30270 * 4 2 1 6 6 C 1.46900 * 110.99890 * 169.71629 * 5 4 2 7 7 C 1.50702 * 109.46757 * 196.37153 * 6 5 4 8 8 O 1.21286 * 120.00643 * 5.50280 * 7 6 5 9 9 N 1.34779 * 119.99517 * 185.49799 * 7 6 5 10 10 C 1.37102 * 119.99866 * 180.02562 * 9 7 6 11 11 H 1.08004 * 119.99868 * 0.02562 * 10 9 7 12 12 C 1.38950 * 120.00043 * 179.97438 * 10 9 7 13 13 N 1.31409 * 120.00097 * 0.02562 * 12 10 9 14 14 Si 1.86801 * 119.99949 * 180.02562 * 12 10 9 15 15 H 1.48496 * 109.47224 * 90.00160 * 14 12 10 16 16 H 1.48492 * 109.47067 * 210.00456 * 14 12 10 17 17 H 1.48504 * 109.46912 * 330.00326 * 14 12 10 18 18 C 1.46896 * 111.00278 * 293.67166 * 5 4 2 19 19 C 1.54267 * 110.03145 * 78.97531 * 18 5 4 20 20 C 1.54965 * 104.16244 * 217.13757 * 19 18 5 21 21 C 1.54885 * 102.77516 * 37.89022 * 20 19 18 22 22 C 1.53882 * 110.03117 * 321.76290 * 18 5 4 23 23 H 1.09000 * 109.47001 * 299.99920 * 1 2 3 24 24 H 1.09001 * 109.46903 * 59.99798 * 1 2 3 25 25 H 1.08993 * 109.46814 * 179.97438 * 1 2 3 26 26 H 1.09002 * 109.47509 * 240.00023 * 2 1 3 27 27 H 1.08997 * 109.47595 * 179.97438 * 3 2 1 28 28 H 1.09001 * 109.47304 * 299.99957 * 3 2 1 29 29 H 1.09000 * 109.47025 * 60.00094 * 3 2 1 30 30 H 1.09005 * 109.46780 * 62.30633 * 4 2 1 31 31 H 1.08997 * 109.47202 * 302.30656 * 4 2 1 32 32 H 1.08996 * 109.47307 * 316.37370 * 6 5 4 33 33 H 1.08999 * 109.46846 * 76.37668 * 6 5 4 34 34 H 0.96991 * 120.00574 * 0.02562 * 9 7 6 35 35 H 0.96998 * 120.00291 * 180.02562 * 13 12 10 36 36 H 1.08995 * 110.01971 * 200.36982 * 18 5 4 37 37 H 1.09004 * 110.49003 * 335.78719 * 19 18 5 38 38 H 1.09002 * 110.48438 * 98.43078 * 19 18 5 39 39 H 1.08995 * 110.71850 * 279.57747 * 20 19 18 40 40 H 1.09002 * 110.92453 * 156.30163 * 20 19 18 41 41 H 1.09006 * 110.48431 * 203.40504 * 21 20 19 42 42 H 1.08999 * 110.60059 * 80.82022 * 21 20 19 43 43 H 1.09000 * 110.02727 * 238.56787 * 22 18 5 44 44 H 1.08995 * 110.03059 * 359.97438 * 22 18 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0401 -0.7212 1.2492 5 7 3.5080 -0.6732 1.2774 6 6 4.0251 -1.1360 2.5721 7 6 5.4620 -0.7068 2.7216 8 8 5.9721 0.0067 1.8838 9 7 6.1801 -1.1157 3.7863 10 6 7.4871 -0.7247 3.9226 11 1 7.9411 -0.0888 3.1770 12 6 8.2273 -1.1458 5.0205 13 7 7.6748 -1.9192 5.9280 14 14 10.0079 -0.6126 5.2066 15 1 10.0663 0.6605 5.9687 16 1 10.7650 -1.6613 5.9359 17 1 10.6078 -0.4131 3.8629 18 6 4.0816 -1.4528 0.1723 19 6 4.0108 -0.6425 -1.1385 20 6 3.6943 -1.7030 -2.2232 21 6 2.7112 -2.6537 -1.4961 22 6 3.2559 -2.7313 -0.0549 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 -1.0276 -0.0005 26 1 1.8934 -0.5138 -0.8900 27 1 3.1300 1.4426 0.0005 28 1 1.6768 1.9564 -0.8900 29 1 1.6767 1.9563 0.8900 30 1 1.7109 -1.7602 1.2288 31 1 1.6434 -0.2318 2.1387 32 1 3.4309 -0.7028 3.3766 33 1 3.9639 -2.2233 2.6201 34 1 5.7723 -1.6864 4.4561 35 1 8.1914 -2.2128 6.6947 36 1 5.1165 -1.7115 0.3960 37 1 3.2136 0.0991 -1.0861 38 1 4.9676 -0.1616 -1.3418 39 1 4.5989 -2.2347 -2.5182 40 1 3.2182 -1.2437 -3.0895 41 1 2.7200 -3.6397 -1.9609 42 1 1.7030 -2.2397 -1.5011 43 1 3.8905 -3.6104 0.0576 44 1 2.4300 -2.7735 0.6550 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000343088845.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:05:59 Heat of formation + Delta-G solvation = -41.951115 kcal Electronic energy + Delta-G solvation = -21986.975741 eV Core-core repulsion = 18938.860108 eV Total energy + Delta-G solvation = -3048.115633 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.33107 -39.67636 -36.31509 -35.99575 -35.00890 -33.22762 -29.95034 -29.48176 -28.19668 -27.71637 -26.63850 -24.43023 -22.07454 -21.28060 -20.70848 -20.02515 -19.69581 -17.85368 -17.55948 -16.84660 -16.54813 -16.02117 -15.47429 -15.35992 -15.23642 -14.94670 -14.59176 -14.18053 -13.97017 -13.56677 -13.39793 -13.31752 -12.96511 -12.85814 -12.67247 -12.46322 -12.41737 -12.13498 -12.06404 -11.94310 -11.83746 -11.73099 -11.64089 -11.54521 -11.46349 -11.09985 -10.63611 -10.26727 -9.98700 -8.98727 -8.45711 -5.94209 1.37213 1.40023 1.52965 2.09138 2.28583 2.80696 3.21027 3.43158 3.76427 3.77403 3.98693 3.99771 4.18384 4.28275 4.37113 4.45086 4.51166 4.53606 4.61817 4.68897 4.70046 4.76227 4.85793 4.88021 4.89411 4.94910 5.08339 5.11505 5.13831 5.21172 5.25737 5.31024 5.36401 5.40870 5.46230 5.54329 5.62399 5.72189 5.96293 6.22343 6.36970 6.63149 7.14829 7.59094 8.16008 8.71986 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.027954 B = 0.004569 C = 0.004384 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1001.417429 B = 6127.035593 C = 6385.924620 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.107 4.107 3 C -0.143 4.143 4 C 0.048 3.952 5 N -0.520 5.520 6 C 0.056 3.944 7 C 0.443 3.557 8 O -0.612 6.612 9 N -0.579 5.579 10 C -0.331 4.331 11 H 0.076 0.924 12 C -0.013 4.013 13 N -0.923 5.923 14 Si 0.992 3.008 15 H -0.271 1.271 16 H -0.270 1.270 17 H -0.274 1.274 18 C 0.089 3.911 19 C -0.140 4.140 20 C -0.122 4.122 21 C -0.112 4.112 22 C -0.166 4.166 23 H 0.053 0.947 24 H 0.064 0.936 25 H 0.062 0.938 26 H 0.097 0.903 27 H 0.047 0.953 28 H 0.058 0.942 29 H 0.045 0.955 30 H 0.061 0.939 31 H 0.071 0.929 32 H 0.105 0.895 33 H 0.062 0.938 34 H 0.394 0.606 35 H 0.277 0.723 36 H 0.035 0.965 37 H 0.115 0.885 38 H 0.033 0.967 39 H 0.056 0.944 40 H 0.084 0.916 41 H 0.074 0.926 42 H 0.083 0.917 43 H 0.052 0.948 44 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.620 -1.795 -11.452 19.451 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.125 4.125 3 C -0.200 4.200 4 C -0.079 4.079 5 N -0.243 5.243 6 C -0.075 4.075 7 C 0.230 3.770 8 O -0.497 6.497 9 N -0.217 5.217 10 C -0.460 4.460 11 H 0.094 0.906 12 C -0.213 4.213 13 N -0.564 5.564 14 Si 0.815 3.185 15 H -0.196 1.196 16 H -0.195 1.195 17 H -0.199 1.199 18 C -0.020 4.020 19 C -0.177 4.177 20 C -0.160 4.160 21 C -0.149 4.149 22 C -0.204 4.204 23 H 0.072 0.928 24 H 0.083 0.917 25 H 0.081 0.919 26 H 0.114 0.886 27 H 0.066 0.934 28 H 0.077 0.923 29 H 0.064 0.936 30 H 0.078 0.922 31 H 0.090 0.910 32 H 0.123 0.877 33 H 0.080 0.920 34 H 0.228 0.772 35 H 0.086 0.914 36 H 0.054 0.946 37 H 0.133 0.867 38 H 0.052 0.948 39 H 0.075 0.925 40 H 0.103 0.897 41 H 0.093 0.907 42 H 0.102 0.898 43 H 0.071 0.929 44 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -15.053 -0.905 -11.878 19.196 hybrid contribution 1.080 -0.834 1.082 1.741 sum -13.973 -1.739 -10.796 17.743 Atomic orbital electron populations 1.21788 0.93620 1.02243 1.02220 1.21596 0.96168 0.96297 0.98488 1.21811 1.01128 0.96048 1.01018 1.22544 0.85649 1.00103 0.99606 1.61752 1.07151 1.54718 1.00678 1.21719 0.92572 0.99108 0.94121 1.20846 0.89394 0.84037 0.82705 1.90485 1.73299 1.41791 1.44127 1.41955 1.11394 1.46156 1.22192 1.19628 0.88366 1.29980 1.08049 0.90590 1.26006 1.04106 0.96403 0.94749 1.69673 1.39220 1.35302 1.12200 0.84949 0.77020 0.78216 0.78272 1.19611 1.19456 1.19924 1.22180 0.96460 0.91686 0.91692 1.23094 1.02259 0.99283 0.93055 1.22519 0.99291 0.96573 0.97648 1.22321 0.99156 0.99949 0.93465 1.22982 1.00499 0.97375 0.99557 0.92821 0.91692 0.91864 0.88556 0.93378 0.92265 0.93554 0.92182 0.91023 0.87660 0.92036 0.77206 0.91375 0.94609 0.86747 0.94807 0.92526 0.89692 0.90700 0.89807 0.92873 0.89336 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.14 9.19 71.98 0.66 -1.48 16 2 C -0.11 -2.20 2.26 -10.79 -0.02 -2.23 16 3 C -0.14 -3.44 7.99 71.98 0.57 -2.86 16 4 C 0.05 1.15 3.97 86.30 0.34 1.49 16 5 N -0.52 -17.10 3.24 -871.28 -2.82 -19.92 16 6 C 0.06 2.05 5.40 85.56 0.46 2.51 16 7 C 0.44 22.02 7.17 87.66 0.63 22.65 16 8 O -0.61 -35.19 15.05 -3.05 -0.05 -35.24 16 9 N -0.58 -30.85 5.29 -306.98 -1.62 -32.47 16 10 C -0.33 -19.36 9.68 84.04 0.81 -18.55 16 11 H 0.08 4.76 7.16 -2.91 -0.02 4.74 16 12 C -0.01 -0.73 5.50 84.93 0.47 -0.26 16 13 N -0.92 -50.97 13.05 21.66 0.28 -50.69 16 14 Si 0.99 44.07 29.55 68.60 2.03 46.10 16 15 H -0.27 -11.66 7.11 99.48 0.71 -10.95 16 16 H -0.27 -11.30 7.11 99.48 0.71 -10.59 16 17 H -0.27 -12.28 7.11 99.48 0.71 -11.58 16 18 C 0.09 2.89 2.39 45.64 0.11 3.00 16 19 C -0.14 -4.06 5.46 31.70 0.17 -3.89 16 20 C -0.12 -2.67 6.70 31.91 0.21 -2.46 16 21 C -0.11 -2.12 6.19 31.67 0.20 -1.93 16 22 C -0.17 -4.09 5.63 31.32 0.18 -3.91 16 23 H 0.05 0.82 8.14 -2.39 -0.02 0.80 16 24 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 25 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 26 H 0.10 1.95 2.65 -2.39 -0.01 1.94 16 27 H 0.05 1.49 6.17 -2.39 -0.01 1.47 16 28 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 29 H 0.05 1.12 8.14 -2.39 -0.02 1.10 16 30 H 0.06 1.27 5.09 -2.38 -0.01 1.26 16 31 H 0.07 1.69 7.85 -2.39 -0.02 1.67 16 32 H 0.11 3.42 7.80 -2.39 -0.02 3.40 16 33 H 0.06 2.05 7.86 -2.39 -0.02 2.03 16 34 H 0.39 20.00 7.90 -92.71 -0.73 19.27 16 35 H 0.28 14.29 8.31 -92.71 -0.77 13.52 16 36 H 0.04 1.51 6.73 -2.39 -0.02 1.49 16 37 H 0.11 3.05 2.43 -2.39 -0.01 3.04 16 38 H 0.03 1.16 8.14 -2.39 -0.02 1.14 16 39 H 0.06 1.30 8.14 -2.39 -0.02 1.28 16 40 H 0.08 1.49 8.14 -2.39 -0.02 1.47 16 41 H 0.07 1.24 8.14 -2.38 -0.02 1.22 16 42 H 0.08 1.33 6.78 -2.39 -0.02 1.31 16 43 H 0.05 1.38 8.14 -2.39 -0.02 1.37 16 44 H 0.09 1.98 4.83 -2.39 -0.01 1.97 16 Total: -1.00 -67.82 328.01 2.88 -64.94 By element: Atomic # 1 Polarization: 34.93 SS G_CDS: 0.26 Total: 35.20 kcal Atomic # 6 Polarization: -12.71 SS G_CDS: 4.79 Total: -7.92 kcal Atomic # 7 Polarization: -98.91 SS G_CDS: -4.16 Total: -103.07 kcal Atomic # 8 Polarization: -35.19 SS G_CDS: -0.05 Total: -35.24 kcal Atomic # 14 Polarization: 44.07 SS G_CDS: 2.03 Total: 46.10 kcal Total: -67.82 2.88 -64.94 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343088845.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.985 kcal (2) G-P(sol) polarization free energy of solvation -67.816 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.832 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.880 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.936 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.951 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds