Wall clock time and date at job start Mon Mar 30 2020 00:37:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53002 * 109.47321 * 2 1 4 4 C 1.53002 * 109.47095 * 174.92724 * 3 2 1 5 5 H 1.08999 * 109.70519 * 298.64427 * 4 3 2 6 6 C 1.53630 * 109.66322 * 59.24033 * 4 3 2 7 7 C 1.53035 * 109.24107 * 174.54848 * 6 4 3 8 8 C 1.53038 * 109.54016 * 298.50734 * 7 6 4 9 9 C 1.53192 * 109.31165 * 61.36626 * 8 7 6 10 10 N 1.46924 * 109.58702 * 178.28755 * 4 3 2 11 11 C 1.34781 * 120.63182 * 6.63400 * 10 4 3 12 12 O 1.21587 * 119.99431 * 5.09441 * 11 10 4 13 13 N 1.34773 * 119.99946 * 185.10369 * 11 10 4 14 14 C 1.46503 * 119.99473 * 174.90825 * 13 11 10 15 15 C 1.53005 * 109.46838 * 179.97438 * 14 13 11 16 16 C 1.50694 * 109.46970 * 179.97438 * 15 14 13 17 17 H 1.07999 * 120.00196 * 0.02562 * 16 15 14 18 18 C 1.37885 * 120.00120 * 180.02562 * 16 15 14 19 19 N 1.31508 * 120.00286 * 180.02562 * 18 16 15 20 20 Si 1.86799 * 119.99692 * 0.02562 * 18 16 15 21 21 H 1.48501 * 109.47171 * 270.00358 * 20 18 16 22 22 H 1.48503 * 109.47442 * 29.99977 * 20 18 16 23 23 H 1.48501 * 109.47342 * 150.00340 * 20 18 16 24 24 H 1.09006 * 109.46651 * 59.99689 * 1 2 3 25 25 H 1.08993 * 109.47220 * 179.97438 * 1 2 3 26 26 H 1.08997 * 109.47088 * 299.99968 * 1 2 3 27 27 H 1.09005 * 109.46947 * 240.00359 * 2 1 3 28 28 H 1.08998 * 109.47237 * 120.00210 * 2 1 3 29 29 H 1.09003 * 109.47101 * 54.93398 * 3 2 1 30 30 H 1.08993 * 109.47442 * 294.92957 * 3 2 1 31 31 H 1.08999 * 109.63509 * 54.55480 * 6 4 3 32 32 H 1.09003 * 109.45307 * 294.43186 * 6 4 3 33 33 H 1.09010 * 109.46180 * 178.49118 * 7 6 4 34 34 H 1.08997 * 109.45544 * 58.52565 * 7 6 4 35 35 H 1.09002 * 109.49856 * 301.41540 * 8 7 6 36 36 H 1.08995 * 109.52683 * 181.33236 * 8 7 6 37 37 H 1.08999 * 109.59084 * 185.58082 * 9 8 7 38 38 H 1.09006 * 109.58707 * 65.15443 * 9 8 7 39 39 H 0.96994 * 120.00285 * 354.89752 * 13 11 10 40 40 H 1.08991 * 109.47563 * 59.99467 * 14 13 11 41 41 H 1.09003 * 109.47028 * 299.98693 * 14 13 11 42 42 H 1.09004 * 109.46655 * 59.99638 * 15 14 13 43 43 H 1.08995 * 109.47007 * 299.99715 * 15 14 13 44 44 H 0.96996 * 120.00078 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5647 1.4443 0.1275 5 1 3.8553 0.9796 1.0697 6 6 4.1826 0.6687 -1.0459 7 6 5.7068 0.7912 -0.9846 8 6 6.1077 2.2623 -1.1158 9 6 5.5116 3.0559 0.0511 10 7 4.0607 2.8267 0.0866 11 6 3.2014 3.8650 0.0874 12 8 2.0086 3.6667 0.2156 13 7 3.6641 5.1228 -0.0540 14 6 2.7240 6.2409 -0.1652 15 6 3.5030 7.5493 -0.3148 16 6 2.5360 8.6993 -0.4298 17 1 1.4722 8.5155 -0.3988 18 6 3.0094 9.9862 -0.5746 19 7 2.1655 10.9899 -0.6745 20 14 4.8493 10.3040 -0.6289 21 1 5.3519 10.5392 0.7485 22 1 5.5383 9.1250 -1.2126 23 1 5.1206 11.5004 -1.4658 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.8933 -0.5138 -0.8901 28 1 1.8933 -0.5138 0.8899 29 1 1.6045 1.9819 0.8412 30 1 1.7528 1.9295 -0.9318 31 1 3.8220 1.0814 -1.9881 32 1 3.8989 -0.3815 -0.9764 33 1 6.1501 0.2199 -1.8003 34 1 6.0643 0.4010 -0.0317 35 1 5.7290 2.6600 -2.0574 36 1 7.1942 2.3470 -1.0959 37 1 5.7103 4.1183 -0.0901 38 1 5.9577 2.7199 0.9872 39 1 4.6195 5.2879 -0.0820 40 1 2.1062 6.2868 0.7316 41 1 2.0874 6.0950 -1.0379 42 1 4.1211 7.5035 -1.2115 43 1 4.1394 7.6951 0.5580 44 1 2.4985 11.8953 -0.7760 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000352085588.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:37:12 Heat of formation + Delta-G solvation = -58.783264 kcal Electronic energy + Delta-G solvation = -21300.146121 eV Core-core repulsion = 18251.300592 eV Total energy + Delta-G solvation = -3048.845530 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.70707 -38.74455 -36.89086 -35.88217 -34.71204 -33.77162 -32.16205 -31.40562 -27.98723 -26.75587 -25.34421 -23.87463 -22.69991 -22.08065 -21.63197 -20.54798 -18.98295 -18.70219 -17.27521 -16.77325 -16.28668 -16.02265 -15.63545 -15.40742 -15.38720 -15.25225 -14.69014 -14.60440 -14.46715 -14.05504 -14.00393 -13.43131 -13.30430 -13.03573 -12.81950 -12.45211 -12.33519 -12.17316 -12.05528 -12.00595 -11.79527 -11.76602 -11.60396 -11.50565 -11.41035 -11.26037 -10.79076 -10.19321 -10.05049 -9.38686 -8.30267 -6.37657 1.38420 1.41356 1.52634 1.69208 2.19213 2.36698 2.98099 3.04593 3.78461 3.85846 3.94680 4.10120 4.19443 4.24747 4.31725 4.35206 4.39277 4.44242 4.57855 4.60843 4.74588 4.76675 4.81515 4.94715 5.00866 5.03301 5.07962 5.09296 5.16712 5.18235 5.24589 5.30575 5.40154 5.42382 5.45279 5.53209 5.55133 5.70669 5.83877 5.99023 6.22951 6.69305 7.04665 7.26808 7.65045 8.86672 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.023171 B = 0.004291 C = 0.003703 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1208.134617 B = 6523.215218 C = 7559.677045 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.123 4.123 3 C -0.102 4.102 4 C 0.161 3.839 5 H 0.082 0.918 6 C -0.126 4.126 7 C -0.115 4.115 8 C -0.132 4.132 9 C 0.103 3.897 10 N -0.626 5.626 11 C 0.694 3.306 12 O -0.622 6.622 13 N -0.738 5.738 14 C 0.166 3.834 15 C -0.010 4.010 16 C -0.539 4.539 17 H 0.028 0.972 18 C 0.005 3.995 19 N -0.950 5.950 20 Si 0.960 3.040 21 H -0.264 1.264 22 H -0.237 1.237 23 H -0.285 1.285 24 H 0.040 0.960 25 H 0.069 0.931 26 H 0.042 0.958 27 H 0.072 0.928 28 H 0.073 0.927 29 H 0.061 0.939 30 H 0.035 0.965 31 H 0.048 0.952 32 H 0.094 0.906 33 H 0.078 0.922 34 H 0.077 0.923 35 H 0.052 0.948 36 H 0.098 0.902 37 H 0.079 0.921 38 H 0.088 0.912 39 H 0.404 0.596 40 H 0.039 0.961 41 H 0.038 0.962 42 H 0.035 0.965 43 H 0.034 0.966 44 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.360 -25.207 0.573 28.080 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.161 4.161 3 C -0.140 4.140 4 C 0.058 3.942 5 H 0.100 0.900 6 C -0.165 4.165 7 C -0.153 4.153 8 C -0.170 4.170 9 C -0.020 4.020 10 N -0.364 5.364 11 C 0.396 3.604 12 O -0.504 6.504 13 N -0.396 5.396 14 C 0.042 3.958 15 C -0.048 4.048 16 C -0.578 4.578 17 H 0.046 0.954 18 C -0.192 4.192 19 N -0.590 5.590 20 Si 0.782 3.218 21 H -0.189 1.189 22 H -0.160 1.160 23 H -0.211 1.211 24 H 0.059 0.941 25 H 0.088 0.912 26 H 0.061 0.939 27 H 0.091 0.909 28 H 0.091 0.909 29 H 0.080 0.920 30 H 0.054 0.946 31 H 0.067 0.933 32 H 0.112 0.888 33 H 0.096 0.904 34 H 0.096 0.904 35 H 0.071 0.929 36 H 0.116 0.884 37 H 0.098 0.902 38 H 0.106 0.894 39 H 0.242 0.758 40 H 0.057 0.943 41 H 0.056 0.944 42 H 0.053 0.947 43 H 0.052 0.948 44 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 11.487 -25.160 0.626 27.665 hybrid contribution 0.229 1.164 -0.128 1.194 sum 11.717 -23.996 0.498 26.708 Atomic orbital electron populations 1.21728 0.96329 1.01749 1.00946 1.21675 0.95788 0.95998 1.02638 1.21928 0.93907 0.95834 1.02283 1.21392 0.94003 0.79529 0.99257 0.90016 1.22098 0.96539 1.00825 0.97015 1.21515 0.94471 0.95919 1.03350 1.21919 1.01818 0.95930 0.97372 1.21918 0.78558 1.01002 1.00479 1.47461 1.06392 1.04877 1.77663 1.16247 0.85039 0.81198 0.77902 1.90919 1.16314 1.83936 1.59185 1.45469 1.10607 1.05020 1.78477 1.20824 0.91263 0.84426 0.99309 1.19622 0.95994 0.91368 0.97775 1.21238 0.93537 0.92075 1.50934 0.95387 1.26081 1.04100 0.95423 0.93637 1.70073 1.37423 1.00206 1.51345 0.85531 0.78498 0.78723 0.79075 1.18920 1.16049 1.21124 0.94110 0.91173 0.93924 0.90892 0.90879 0.92026 0.94576 0.93304 0.88807 0.90378 0.90399 0.92925 0.88383 0.90229 0.89419 0.75813 0.94261 0.94366 0.94667 0.94783 0.92291 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.12 9.91 71.98 0.71 -2.41 16 2 C -0.12 -2.40 5.42 30.59 0.17 -2.23 16 3 C -0.10 -2.75 3.17 30.60 0.10 -2.65 16 4 C 0.16 3.48 3.04 45.12 0.14 3.62 16 5 H 0.08 1.53 8.14 -2.39 -0.02 1.51 16 6 C -0.13 -2.03 4.85 30.82 0.15 -1.88 16 7 C -0.12 -1.35 5.88 30.62 0.18 -1.17 16 8 C -0.13 -1.78 6.08 30.67 0.19 -1.59 16 9 C 0.10 1.76 6.43 86.36 0.56 2.32 16 10 N -0.63 -15.78 2.97 -812.06 -2.41 -18.19 16 11 C 0.69 24.18 8.14 179.05 1.46 25.64 16 12 O -0.62 -26.43 11.89 -3.99 -0.05 -26.48 16 13 N -0.74 -25.32 5.47 -478.53 -2.62 -27.93 16 14 C 0.17 7.17 5.62 86.38 0.49 7.66 16 15 C -0.01 -0.45 4.16 29.85 0.12 -0.32 16 16 C -0.54 -31.41 9.66 25.60 0.25 -31.17 16 17 H 0.03 1.83 7.99 -2.91 -0.02 1.81 16 18 C 0.00 0.27 5.47 84.66 0.46 0.74 16 19 N -0.95 -59.84 13.96 21.45 0.30 -59.54 16 20 Si 0.96 42.64 27.47 68.60 1.88 44.53 16 21 H -0.26 -11.21 7.11 99.48 0.71 -10.50 16 22 H -0.24 -9.38 6.54 99.48 0.65 -8.73 16 23 H -0.29 -12.56 7.11 99.48 0.71 -11.85 16 24 H 0.04 0.93 8.14 -2.38 -0.02 0.91 16 25 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 26 H 0.04 0.97 8.14 -2.39 -0.02 0.95 16 27 H 0.07 1.19 6.85 -2.38 -0.02 1.18 16 28 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 29 H 0.06 2.11 6.23 -2.39 -0.01 2.09 16 30 H 0.04 1.20 7.23 -2.39 -0.02 1.18 16 31 H 0.05 0.97 8.14 -2.39 -0.02 0.95 16 32 H 0.09 1.15 6.88 -2.39 -0.02 1.13 16 33 H 0.08 0.75 8.14 -2.38 -0.02 0.73 16 34 H 0.08 0.74 8.14 -2.39 -0.02 0.72 16 35 H 0.05 0.89 8.14 -2.39 -0.02 0.87 16 36 H 0.10 0.89 8.14 -2.39 -0.02 0.87 16 37 H 0.08 1.35 5.56 -2.39 -0.01 1.33 16 38 H 0.09 1.18 8.14 -2.38 -0.02 1.17 16 39 H 0.40 11.21 5.93 -92.71 -0.55 10.66 16 40 H 0.04 1.84 8.14 -2.39 -0.02 1.82 16 41 H 0.04 1.78 8.14 -2.39 -0.02 1.76 16 42 H 0.04 1.52 7.20 -2.39 -0.02 1.50 16 43 H 0.03 1.45 7.57 -2.39 -0.02 1.43 16 44 H 0.27 15.63 8.31 -92.71 -0.77 14.86 16 Total: -1.00 -72.85 335.95 2.43 -70.43 By element: Atomic # 1 Polarization: 20.28 SS G_CDS: 0.35 Total: 20.64 kcal Atomic # 6 Polarization: -8.41 SS G_CDS: 4.96 Total: -3.45 kcal Atomic # 7 Polarization: -100.94 SS G_CDS: -4.73 Total: -105.67 kcal Atomic # 8 Polarization: -26.43 SS G_CDS: -0.05 Total: -26.48 kcal Atomic # 14 Polarization: 42.64 SS G_CDS: 1.88 Total: 44.53 kcal Total: -72.85 2.43 -70.43 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000352085588.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.642 kcal (2) G-P(sol) polarization free energy of solvation -72.854 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.212 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.428 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.426 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.783 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds