Wall clock time and date at job start Mon Mar 30 2020 00:43:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52995 * 109.47559 * 2 1 4 4 C 1.52997 * 109.47559 * 179.97438 * 3 2 1 5 5 H 1.09001 * 109.46680 * 304.99631 * 4 3 2 6 6 C 1.53000 * 109.47335 * 64.99637 * 4 3 2 7 7 C 1.53001 * 109.47530 * 185.00005 * 4 3 2 8 8 C 1.50696 * 109.47501 * 174.99941 * 7 4 3 9 9 O 1.21282 * 119.99822 * 359.97438 * 8 7 4 10 10 N 1.34770 * 120.00278 * 179.97438 * 8 7 4 11 11 C 1.46966 * 120.59433 * 359.71488 * 10 8 7 12 12 C 1.53371 * 108.63214 * 125.04745 * 11 10 8 13 13 N 1.46963 * 108.63418 * 49.43302 * 12 11 10 14 14 C 1.36937 * 120.59815 * 124.74935 * 13 12 11 15 15 H 1.07999 * 120.00014 * 207.37913 * 14 13 12 16 16 C 1.38812 * 119.99671 * 27.37573 * 14 13 12 17 17 N 1.31615 * 119.99970 * 215.22235 * 16 14 13 18 18 Si 1.86803 * 119.99995 * 35.22632 * 16 14 13 19 19 H 1.48500 * 109.47190 * 95.37455 * 18 16 14 20 20 H 1.48500 * 109.46951 * 215.37253 * 18 16 14 21 21 H 1.48498 * 109.47169 * 335.37171 * 18 16 14 22 22 C 1.46966 * 118.80705 * 304.76529 * 13 12 11 23 23 C 1.46963 * 120.59801 * 180.02562 * 10 8 7 24 24 H 1.09005 * 109.46836 * 60.00292 * 1 2 3 25 25 H 1.09001 * 109.47391 * 179.97438 * 1 2 3 26 26 H 1.08997 * 109.47491 * 300.00645 * 1 2 3 27 27 H 1.08997 * 109.47491 * 239.99355 * 2 1 3 28 28 H 1.09005 * 109.46836 * 119.99708 * 2 1 3 29 29 H 1.08997 * 109.47246 * 59.99205 * 3 2 1 30 30 H 1.09005 * 109.46808 * 299.99725 * 3 2 1 31 31 H 1.09002 * 109.46779 * 300.00066 * 6 4 3 32 32 H 1.09005 * 109.46978 * 59.99908 * 6 4 3 33 33 H 1.08997 * 109.47294 * 180.02562 * 6 4 3 34 34 H 1.08993 * 109.47289 * 54.99371 * 7 4 3 35 35 H 1.09005 * 109.46515 * 294.99756 * 7 4 3 36 36 H 1.08993 * 109.61449 * 244.79432 * 11 10 8 37 37 H 1.09004 * 109.60572 * 5.30756 * 11 10 8 38 38 H 1.08998 * 109.61312 * 289.68287 * 12 11 10 39 39 H 1.09005 * 109.60331 * 169.17097 * 12 11 10 40 40 H 0.97002 * 120.00165 * 180.02562 * 17 16 14 41 41 H 1.08993 * 109.61449 * 295.48685 * 22 13 12 42 42 H 1.09005 * 109.74960 * 175.05727 * 22 13 12 43 43 H 1.09012 * 109.60617 * 354.69174 * 23 10 8 44 44 H 1.08996 * 109.61299 * 115.02892 * 23 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 3.5700 1.4424 0.0006 5 1 3.9329 0.8531 0.8428 6 6 4.0806 0.8325 -1.3063 7 6 4.0801 2.8794 0.1264 8 6 5.5819 2.8704 0.2505 9 8 6.1849 1.8182 0.2400 10 7 6.2549 4.0316 0.3732 11 6 5.5379 5.3145 0.3813 12 6 5.9204 6.0816 1.6530 13 7 7.3850 6.0881 1.7750 14 6 8.0693 7.2683 1.8936 15 1 9.0908 7.3371 1.5498 16 6 7.4500 8.3762 2.4556 17 7 7.7211 9.5819 2.0029 18 14 6.2318 8.1558 3.8546 19 1 6.9298 8.3400 5.1523 20 1 5.1467 9.1617 3.7290 21 1 5.6507 6.7906 3.7944 22 6 8.1019 4.8052 1.7670 23 6 7.7195 4.0381 0.4946 24 1 -0.3633 0.5138 -0.8901 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3634 0.5139 0.8899 27 1 1.8934 -0.5139 -0.8899 28 1 1.8933 -0.5138 0.8901 29 1 1.6767 1.9563 0.8899 30 1 1.6768 1.9562 -0.8901 31 1 3.7173 -0.1913 -1.3958 32 1 3.7176 1.4218 -2.1485 33 1 5.1706 0.8321 -1.3057 34 1 3.6451 3.3432 1.0116 35 1 3.7921 3.4459 -0.7593 36 1 5.8199 5.8967 -0.4959 37 1 4.4632 5.1329 0.3729 38 1 5.4831 5.5903 2.5222 39 1 5.5544 7.1062 1.5861 40 1 7.2887 10.3562 2.3959 41 1 7.8199 4.2230 2.6441 42 1 9.1772 4.9841 1.7768 43 1 8.0856 3.0134 0.5612 44 1 8.1566 4.5269 -0.3760 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000353665463.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:43:41 Heat of formation + Delta-G solvation = -26.162599 kcal Electronic energy + Delta-G solvation = -21361.462100 eV Core-core repulsion = 18314.031109 eV Total energy + Delta-G solvation = -3047.430992 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -39.93731 -37.50821 -36.45066 -33.93903 -32.85760 -31.63386 -30.72504 -28.31295 -26.77328 -26.64098 -23.60100 -23.20408 -22.15754 -20.75369 -19.95125 -18.56817 -17.19070 -16.23026 -15.87107 -15.54114 -15.30089 -14.73334 -14.33206 -14.17878 -14.00808 -13.74068 -13.56247 -13.18256 -12.93447 -12.66714 -12.39362 -12.17509 -12.03148 -11.86093 -11.74214 -11.58344 -11.09385 -11.01408 -10.83365 -10.75585 -10.62620 -10.51647 -10.47498 -10.33504 -10.17767 -9.49829 -9.32503 -8.73510 -8.22346 -7.03005 -6.11733 -3.33713 2.92509 3.30399 3.36031 3.45331 3.50331 4.48676 4.55074 4.69696 4.75695 4.83407 5.00148 5.02281 5.13255 5.23319 5.38356 5.45170 5.52933 5.57636 5.61741 5.62887 5.66768 5.74896 5.80458 5.80988 5.87248 5.90601 6.01026 6.04745 6.07124 6.09956 6.18540 6.25705 6.37835 6.47697 6.49532 6.56290 6.73501 6.94922 7.79844 7.85912 8.22274 8.49772 8.85334 9.63446 10.03483 11.02860 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.026722 B = 0.004369 C = 0.003948 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1047.585682 B = 6407.574107 C = 7090.351156 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.126 4.126 3 C -0.116 4.116 4 C -0.075 4.075 5 H 0.076 0.924 6 C -0.152 4.152 7 C -0.137 4.137 8 C 0.511 3.489 9 O -0.554 6.554 10 N -0.601 5.601 11 C 0.085 3.915 12 C 0.131 3.869 13 N -0.600 5.600 14 C -0.274 4.274 15 H 0.083 0.917 16 C 0.038 3.962 17 N -0.882 5.882 18 Si 0.836 3.164 19 H -0.292 1.292 20 H -0.293 1.293 21 H -0.256 1.256 22 C 0.133 3.867 23 C 0.095 3.905 24 H 0.052 0.948 25 H 0.051 0.949 26 H 0.053 0.947 27 H 0.064 0.936 28 H 0.060 0.940 29 H 0.061 0.939 30 H 0.061 0.939 31 H 0.051 0.949 32 H 0.045 0.955 33 H 0.074 0.926 34 H 0.090 0.910 35 H 0.090 0.910 36 H 0.072 0.928 37 H 0.075 0.925 38 H 0.033 0.967 39 H 0.077 0.923 40 H 0.263 0.737 41 H 0.025 0.975 42 H 0.074 0.926 43 H 0.084 0.916 44 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.730 -14.710 -5.110 19.496 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.163 4.163 3 C -0.154 4.154 4 C -0.094 4.094 5 H 0.095 0.905 6 C -0.209 4.209 7 C -0.177 4.177 8 C 0.299 3.701 9 O -0.433 6.433 10 N -0.333 5.333 11 C -0.039 4.039 12 C 0.004 3.996 13 N -0.324 5.324 14 C -0.401 4.401 15 H 0.100 0.900 16 C -0.163 4.163 17 N -0.522 5.522 18 Si 0.663 3.337 19 H -0.220 1.220 20 H -0.220 1.220 21 H -0.180 1.180 22 C 0.006 3.994 23 C -0.029 4.029 24 H 0.071 0.929 25 H 0.070 0.930 26 H 0.072 0.928 27 H 0.083 0.917 28 H 0.079 0.921 29 H 0.080 0.920 30 H 0.080 0.920 31 H 0.070 0.930 32 H 0.064 0.936 33 H 0.093 0.907 34 H 0.109 0.891 35 H 0.108 0.892 36 H 0.090 0.910 37 H 0.093 0.907 38 H 0.051 0.949 39 H 0.095 0.905 40 H 0.073 0.927 41 H 0.043 0.957 42 H 0.092 0.908 43 H 0.102 0.898 44 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -11.396 -15.038 -5.112 19.548 hybrid contribution -0.698 0.346 0.964 1.239 sum -12.094 -14.692 -4.149 19.477 Atomic orbital electron populations 1.21783 0.96141 1.01365 1.01711 1.21567 0.95457 0.97085 1.02202 1.21688 0.94880 0.96828 1.01962 1.20892 0.94222 0.94490 0.99748 0.90540 1.21980 1.03175 0.99875 0.95899 1.21770 0.92745 0.99235 1.03916 1.20629 0.90006 0.83307 0.76136 1.90603 1.70413 1.30610 1.51696 1.48071 1.07907 1.06144 1.71178 1.22506 0.95526 0.84334 1.01552 1.21735 0.85596 0.98861 0.93410 1.44280 1.01142 1.02141 1.84820 1.18790 0.99570 0.85774 1.36000 0.89990 1.25239 0.97569 0.94721 0.98773 1.70081 1.44406 0.98596 1.39128 0.87607 0.81283 0.78607 0.86154 1.21971 1.22013 1.18041 1.21342 0.97143 0.87025 0.93840 1.22186 0.79315 1.01377 0.99980 0.92856 0.92993 0.92835 0.91747 0.92092 0.92015 0.91976 0.92998 0.93581 0.90674 0.89128 0.89179 0.90992 0.90653 0.94926 0.90492 0.92690 0.95660 0.90786 0.89770 0.91673 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.13 9.91 37.16 0.37 -0.76 16 2 C -0.13 -1.06 5.69 -26.74 -0.15 -1.21 16 3 C -0.12 -1.06 4.68 -26.74 -0.13 -1.18 16 4 C -0.07 -0.84 2.04 -90.62 -0.18 -1.03 16 5 H 0.08 0.98 7.95 -51.93 -0.41 0.57 16 6 C -0.15 -1.75 8.69 37.16 0.32 -1.43 16 7 C -0.14 -1.66 3.52 -27.88 -0.10 -1.75 16 8 C 0.51 8.17 7.41 -10.99 -0.08 8.09 16 9 O -0.55 -10.20 13.37 5.56 0.07 -10.13 16 10 N -0.60 -10.15 2.95 -172.46 -0.51 -10.66 16 11 C 0.09 1.40 6.50 -3.60 -0.02 1.38 16 12 C 0.13 2.66 4.51 -3.60 -0.02 2.65 16 13 N -0.60 -13.77 2.70 -172.01 -0.46 -14.23 16 14 C -0.27 -7.36 9.86 -15.06 -0.15 -7.51 16 15 H 0.08 2.35 8.06 -52.49 -0.42 1.93 16 16 C 0.04 1.06 4.85 -17.43 -0.08 0.97 16 17 N -0.88 -25.90 13.97 55.49 0.78 -25.13 16 18 Si 0.84 20.48 26.43 -169.99 -4.49 15.99 16 19 H -0.29 -7.42 7.11 56.52 0.40 -7.02 16 20 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 21 H -0.26 -5.91 4.82 56.52 0.27 -5.64 16 22 C 0.13 2.61 6.67 -3.57 -0.02 2.59 16 23 C 0.10 1.67 6.60 -3.58 -0.02 1.65 16 24 H 0.05 0.38 8.14 -51.93 -0.42 -0.05 16 25 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 26 H 0.05 0.39 8.14 -51.93 -0.42 -0.04 16 27 H 0.06 0.54 6.57 -51.93 -0.34 0.20 16 28 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 29 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 30 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.05 0.53 6.57 -51.93 -0.34 0.19 16 32 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 33 H 0.07 1.06 5.95 -51.93 -0.31 0.75 16 34 H 0.09 1.02 7.73 -51.93 -0.40 0.62 16 35 H 0.09 0.96 7.91 -51.93 -0.41 0.55 16 36 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 37 H 0.08 0.98 5.92 -51.93 -0.31 0.68 16 38 H 0.03 0.68 6.69 -51.93 -0.35 0.33 16 39 H 0.08 1.67 5.59 -51.93 -0.29 1.38 16 40 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 41 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 42 H 0.07 1.41 7.94 -51.93 -0.41 1.00 16 43 H 0.08 1.44 7.00 -51.92 -0.36 1.08 16 44 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 LS Contribution 332.98 15.07 5.02 5.02 Total: -1.00 -30.31 332.98 -7.72 -38.02 By element: Atomic # 1 Polarization: 6.50 SS G_CDS: -7.85 Total: -1.35 kcal Atomic # 6 Polarization: 2.73 SS G_CDS: -0.27 Total: 2.46 kcal Atomic # 7 Polarization: -49.82 SS G_CDS: -0.20 Total: -50.02 kcal Atomic # 8 Polarization: -10.20 SS G_CDS: 0.07 Total: -10.13 kcal Atomic # 14 Polarization: 20.48 SS G_CDS: -4.49 Total: 15.99 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -30.31 -7.72 -38.02 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000353665463.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.862 kcal (2) G-P(sol) polarization free energy of solvation -30.306 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.444 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.719 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.025 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.163 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds