Wall clock time and date at job start Mon Mar 30 2020 00:43:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52995 * 109.47559 * 2 1 4 4 C 1.52997 * 109.47559 * 179.97438 * 3 2 1 5 5 H 1.09001 * 109.46680 * 304.99631 * 4 3 2 6 6 C 1.53000 * 109.47335 * 64.99637 * 4 3 2 7 7 C 1.53001 * 109.47530 * 185.00005 * 4 3 2 8 8 C 1.50696 * 109.47501 * 174.99941 * 7 4 3 9 9 O 1.21282 * 119.99822 * 359.97438 * 8 7 4 10 10 N 1.34770 * 120.00278 * 179.97438 * 8 7 4 11 11 C 1.46966 * 120.59433 * 359.71488 * 10 8 7 12 12 C 1.53371 * 108.63214 * 125.04745 * 11 10 8 13 13 N 1.46963 * 108.63418 * 49.43302 * 12 11 10 14 14 C 1.36937 * 120.59815 * 124.74935 * 13 12 11 15 15 H 1.07999 * 120.00014 * 207.37913 * 14 13 12 16 16 C 1.38812 * 119.99671 * 27.37573 * 14 13 12 17 17 N 1.31615 * 119.99970 * 215.22235 * 16 14 13 18 18 Si 1.86803 * 119.99995 * 35.22632 * 16 14 13 19 19 H 1.48500 * 109.47190 * 95.37455 * 18 16 14 20 20 H 1.48500 * 109.46951 * 215.37253 * 18 16 14 21 21 H 1.48498 * 109.47169 * 335.37171 * 18 16 14 22 22 C 1.46966 * 118.80705 * 304.76529 * 13 12 11 23 23 C 1.46963 * 120.59801 * 180.02562 * 10 8 7 24 24 H 1.09005 * 109.46836 * 60.00292 * 1 2 3 25 25 H 1.09001 * 109.47391 * 179.97438 * 1 2 3 26 26 H 1.08997 * 109.47491 * 300.00645 * 1 2 3 27 27 H 1.08997 * 109.47491 * 239.99355 * 2 1 3 28 28 H 1.09005 * 109.46836 * 119.99708 * 2 1 3 29 29 H 1.08997 * 109.47246 * 59.99205 * 3 2 1 30 30 H 1.09005 * 109.46808 * 299.99725 * 3 2 1 31 31 H 1.09002 * 109.46779 * 300.00066 * 6 4 3 32 32 H 1.09005 * 109.46978 * 59.99908 * 6 4 3 33 33 H 1.08997 * 109.47294 * 180.02562 * 6 4 3 34 34 H 1.08993 * 109.47289 * 54.99371 * 7 4 3 35 35 H 1.09005 * 109.46515 * 294.99756 * 7 4 3 36 36 H 1.08993 * 109.61449 * 244.79432 * 11 10 8 37 37 H 1.09004 * 109.60572 * 5.30756 * 11 10 8 38 38 H 1.08998 * 109.61312 * 289.68287 * 12 11 10 39 39 H 1.09005 * 109.60331 * 169.17097 * 12 11 10 40 40 H 0.97002 * 120.00165 * 180.02562 * 17 16 14 41 41 H 1.08993 * 109.61449 * 295.48685 * 22 13 12 42 42 H 1.09005 * 109.74960 * 175.05727 * 22 13 12 43 43 H 1.09012 * 109.60617 * 354.69174 * 23 10 8 44 44 H 1.08996 * 109.61299 * 115.02892 * 23 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 3.5700 1.4424 0.0006 5 1 3.9329 0.8531 0.8428 6 6 4.0806 0.8325 -1.3063 7 6 4.0801 2.8794 0.1264 8 6 5.5819 2.8704 0.2505 9 8 6.1849 1.8182 0.2400 10 7 6.2549 4.0316 0.3732 11 6 5.5379 5.3145 0.3813 12 6 5.9204 6.0816 1.6530 13 7 7.3850 6.0881 1.7750 14 6 8.0693 7.2683 1.8936 15 1 9.0908 7.3371 1.5498 16 6 7.4500 8.3762 2.4556 17 7 7.7211 9.5819 2.0029 18 14 6.2318 8.1558 3.8546 19 1 6.9298 8.3400 5.1523 20 1 5.1467 9.1617 3.7290 21 1 5.6507 6.7906 3.7944 22 6 8.1019 4.8052 1.7670 23 6 7.7195 4.0381 0.4946 24 1 -0.3633 0.5138 -0.8901 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3634 0.5139 0.8899 27 1 1.8934 -0.5139 -0.8899 28 1 1.8933 -0.5138 0.8901 29 1 1.6767 1.9563 0.8899 30 1 1.6768 1.9562 -0.8901 31 1 3.7173 -0.1913 -1.3958 32 1 3.7176 1.4218 -2.1485 33 1 5.1706 0.8321 -1.3057 34 1 3.6451 3.3432 1.0116 35 1 3.7921 3.4459 -0.7593 36 1 5.8199 5.8967 -0.4959 37 1 4.4632 5.1329 0.3729 38 1 5.4831 5.5903 2.5222 39 1 5.5544 7.1062 1.5861 40 1 7.2887 10.3562 2.3959 41 1 7.8199 4.2230 2.6441 42 1 9.1772 4.9841 1.7768 43 1 8.0856 3.0134 0.5612 44 1 8.1566 4.5269 -0.3760 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000353665463.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:43:40 Heat of formation + Delta-G solvation = -43.689769 kcal Electronic energy + Delta-G solvation = -21362.222136 eV Core-core repulsion = 18314.031109 eV Total energy + Delta-G solvation = -3048.191027 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.21767 -38.86171 -37.48513 -35.60180 -33.79379 -33.39850 -32.21711 -29.56367 -28.19429 -27.41710 -25.25631 -24.73559 -23.14424 -22.02438 -20.92853 -19.99478 -18.72860 -17.81843 -17.10805 -16.86388 -16.45618 -16.14947 -16.01935 -15.36121 -15.15849 -14.96975 -14.72457 -14.41246 -14.18303 -14.12998 -14.01924 -13.48780 -13.15189 -12.83474 -12.76235 -12.58567 -12.52426 -12.32409 -12.22048 -12.08530 -11.86622 -11.78571 -11.59907 -11.43352 -11.37165 -11.22884 -10.68832 -10.57098 -9.81956 -8.86648 -8.23078 -5.42250 1.35792 1.48050 1.54088 1.69277 2.05361 2.44649 2.94761 3.37583 3.55673 3.81858 3.99830 4.11748 4.13755 4.24363 4.30774 4.35465 4.44007 4.45296 4.55397 4.58029 4.69388 4.73566 4.76045 4.79098 4.84222 4.87730 4.96802 5.00151 5.01179 5.09140 5.18245 5.22260 5.27604 5.34084 5.46150 5.52828 5.59179 5.63102 5.85073 6.10258 6.52866 6.89471 7.23655 7.61122 8.03649 8.95188 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.026722 B = 0.004369 C = 0.003948 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1047.585682 B = 6407.574107 C = 7090.351156 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.127 4.127 3 C -0.109 4.109 4 C -0.071 4.071 5 H 0.056 0.944 6 C -0.149 4.149 7 C -0.133 4.133 8 C 0.508 3.492 9 O -0.581 6.581 10 N -0.607 5.607 11 C 0.097 3.903 12 C 0.124 3.876 13 N -0.614 5.614 14 C -0.266 4.266 15 H 0.048 0.952 16 C -0.012 4.012 17 N -0.930 5.930 18 Si 0.902 3.098 19 H -0.306 1.306 20 H -0.291 1.291 21 H -0.232 1.232 22 C 0.133 3.867 23 C 0.104 3.896 24 H 0.057 0.943 25 H 0.055 0.945 26 H 0.054 0.946 27 H 0.063 0.937 28 H 0.054 0.946 29 H 0.068 0.932 30 H 0.073 0.927 31 H 0.059 0.941 32 H 0.057 0.943 33 H 0.045 0.955 34 H 0.108 0.892 35 H 0.113 0.887 36 H 0.067 0.933 37 H 0.119 0.881 38 H 0.039 0.961 39 H 0.063 0.937 40 H 0.264 0.736 41 H 0.028 0.972 42 H 0.071 0.929 43 H 0.088 0.912 44 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.484 -16.038 -5.242 22.236 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.164 4.164 3 C -0.147 4.147 4 C -0.090 4.090 5 H 0.075 0.925 6 C -0.206 4.206 7 C -0.172 4.172 8 C 0.298 3.702 9 O -0.461 6.461 10 N -0.340 5.340 11 C -0.027 4.027 12 C -0.002 4.002 13 N -0.338 5.338 14 C -0.395 4.395 15 H 0.066 0.934 16 C -0.210 4.210 17 N -0.574 5.574 18 Si 0.729 3.271 19 H -0.234 1.234 20 H -0.218 1.218 21 H -0.155 1.155 22 C 0.008 3.992 23 C -0.020 4.020 24 H 0.076 0.924 25 H 0.074 0.926 26 H 0.073 0.927 27 H 0.081 0.919 28 H 0.073 0.927 29 H 0.086 0.914 30 H 0.091 0.909 31 H 0.078 0.922 32 H 0.076 0.924 33 H 0.064 0.936 34 H 0.126 0.874 35 H 0.131 0.869 36 H 0.086 0.914 37 H 0.137 0.863 38 H 0.056 0.944 39 H 0.081 0.919 40 H 0.073 0.927 41 H 0.046 0.954 42 H 0.089 0.911 43 H 0.106 0.894 44 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -14.180 -16.413 -5.248 22.316 hybrid contribution 0.249 0.678 0.953 1.196 sum -13.931 -15.735 -4.295 21.450 Atomic orbital electron populations 1.21767 0.95227 1.01817 1.02033 1.21568 0.96247 0.96732 1.01881 1.21636 0.92885 0.97349 1.02813 1.20859 0.95784 0.93695 0.98698 0.92498 1.21926 1.01166 1.00854 0.96658 1.21866 0.89408 1.00255 1.05720 1.21359 0.91597 0.82334 0.74867 1.90604 1.71406 1.31522 1.52618 1.48168 1.07451 1.06774 1.71560 1.22387 0.97870 0.83526 0.98948 1.21818 0.83797 0.98906 0.95661 1.44397 1.02442 1.01863 1.85119 1.18700 0.98589 0.87321 1.34869 0.93383 1.25745 1.00303 0.94330 1.00605 1.70165 1.47029 0.99475 1.40688 0.86578 0.79092 0.79692 0.81770 1.23426 1.21794 1.15522 1.21402 0.96906 0.85883 0.95044 1.21951 0.80507 1.01005 0.98538 0.92357 0.92570 0.92663 0.91853 0.92732 0.91351 0.90861 0.92166 0.92359 0.93631 0.87374 0.86883 0.91415 0.86318 0.94363 0.91893 0.92744 0.95380 0.91087 0.89376 0.91977 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.82 9.91 71.98 0.71 -1.11 16 2 C -0.13 -1.82 5.69 30.59 0.17 -1.64 16 3 C -0.11 -1.61 4.68 30.59 0.14 -1.47 16 4 C -0.07 -1.42 2.04 -10.79 -0.02 -1.44 16 5 H 0.06 1.36 7.95 -2.39 -0.02 1.34 16 6 C -0.15 -3.13 8.69 71.98 0.63 -2.50 16 7 C -0.13 -2.72 3.52 29.85 0.10 -2.61 16 8 C 0.51 15.00 7.41 87.66 0.65 15.65 16 9 O -0.58 -20.65 13.37 -3.04 -0.04 -20.69 16 10 N -0.61 -19.10 2.95 -817.93 -2.41 -21.51 16 11 C 0.10 2.87 6.50 86.42 0.56 3.44 16 12 C 0.12 4.77 4.51 86.42 0.39 5.16 16 13 N -0.61 -27.71 2.70 -698.12 -1.88 -29.59 16 14 C -0.27 -14.49 9.86 84.03 0.83 -13.66 16 15 H 0.05 2.88 8.06 -2.91 -0.02 2.86 16 16 C -0.01 -0.67 4.85 84.86 0.41 -0.26 16 17 N -0.93 -55.82 13.97 21.65 0.30 -55.52 16 18 Si 0.90 42.41 26.43 68.60 1.81 44.22 16 19 H -0.31 -14.99 7.11 99.48 0.71 -14.28 16 20 H -0.29 -13.52 7.11 99.48 0.71 -12.82 16 21 H -0.23 -9.87 4.82 99.48 0.48 -9.39 16 22 C 0.13 5.16 6.67 86.43 0.58 5.74 16 23 C 0.10 3.56 6.60 86.43 0.57 4.13 16 24 H 0.06 0.65 8.14 -2.38 -0.02 0.63 16 25 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16 26 H 0.05 0.65 8.14 -2.39 -0.02 0.63 16 27 H 0.06 0.92 6.57 -2.39 -0.02 0.90 16 28 H 0.05 0.85 8.14 -2.38 -0.02 0.83 16 29 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 30 H 0.07 0.95 8.14 -2.38 -0.02 0.93 16 31 H 0.06 1.13 6.57 -2.39 -0.02 1.12 16 32 H 0.06 1.06 8.14 -2.38 -0.02 1.04 16 33 H 0.04 1.24 5.95 -2.39 -0.01 1.22 16 34 H 0.11 1.90 7.73 -2.39 -0.02 1.88 16 35 H 0.11 1.85 7.91 -2.38 -0.02 1.83 16 36 H 0.07 2.11 8.14 -2.39 -0.02 2.09 16 37 H 0.12 2.51 5.92 -2.38 -0.01 2.50 16 38 H 0.04 1.45 6.69 -2.39 -0.02 1.43 16 39 H 0.06 2.61 5.59 -2.38 -0.01 2.60 16 40 H 0.26 14.97 8.31 -92.71 -0.77 14.20 16 41 H 0.03 1.08 8.14 -2.39 -0.02 1.06 16 42 H 0.07 2.73 7.94 -2.38 -0.02 2.71 16 43 H 0.09 2.95 7.00 -2.38 -0.02 2.93 16 44 H 0.06 2.14 8.14 -2.39 -0.02 2.12 16 Total: -1.00 -66.01 332.98 4.23 -61.78 By element: Atomic # 1 Polarization: 11.17 SS G_CDS: 0.72 Total: 11.89 kcal Atomic # 6 Polarization: 3.69 SS G_CDS: 5.73 Total: 9.42 kcal Atomic # 7 Polarization: -102.63 SS G_CDS: -3.99 Total: -106.62 kcal Atomic # 8 Polarization: -20.65 SS G_CDS: -0.04 Total: -20.69 kcal Atomic # 14 Polarization: 42.41 SS G_CDS: 1.81 Total: 44.22 kcal Total: -66.01 4.23 -61.78 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000353665463.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.087 kcal (2) G-P(sol) polarization free energy of solvation -66.012 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.925 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.235 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.777 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.690 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds