Wall clock time and date at job start Mon Mar 30 2020 00:43:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52997 * 109.47190 * 2 1 4 4 C 1.53003 * 109.47190 * 180.02562 * 3 2 1 5 5 H 1.08997 * 109.46932 * 54.99533 * 4 3 2 6 6 C 1.53002 * 109.46905 * 294.99730 * 4 3 2 7 7 C 1.52998 * 109.47137 * 174.99705 * 4 3 2 8 8 C 1.50698 * 109.46952 * 184.99939 * 7 4 3 9 9 O 1.21286 * 120.00184 * 359.97438 * 8 7 4 10 10 N 1.34776 * 120.00099 * 180.02562 * 8 7 4 11 11 C 1.46967 * 120.59401 * 359.71776 * 10 8 7 12 12 C 1.53812 * 108.40078 * 124.75982 * 11 10 8 13 13 N 1.46960 * 108.57675 * 49.63759 * 12 11 10 14 14 C 1.36933 * 120.59171 * 124.62652 * 13 12 11 15 15 H 1.08006 * 120.00039 * 208.17497 * 14 13 12 16 16 C 1.38811 * 120.00237 * 28.17437 * 14 13 12 17 17 N 1.31614 * 119.99915 * 17.56902 * 16 14 13 18 18 Si 1.86798 * 120.00332 * 197.57005 * 16 14 13 19 19 H 1.48501 * 109.47265 * 0.02562 * 18 16 14 20 20 H 1.48503 * 109.47280 * 119.99878 * 18 16 14 21 21 H 1.48502 * 109.47267 * 240.00272 * 18 16 14 22 22 C 1.46961 * 118.81351 * 304.64766 * 13 12 11 23 23 C 1.46960 * 120.59732 * 179.97438 * 10 8 7 24 24 H 1.08998 * 109.47217 * 300.00238 * 1 2 3 25 25 H 1.09001 * 109.46556 * 60.00543 * 1 2 3 26 26 H 1.09001 * 109.47140 * 180.02562 * 1 2 3 27 27 H 1.09002 * 109.47077 * 119.99491 * 2 1 3 28 28 H 1.08998 * 109.47217 * 239.99762 * 2 1 3 29 29 H 1.09002 * 109.46694 * 299.99725 * 3 2 1 30 30 H 1.08998 * 109.47235 * 59.99773 * 3 2 1 31 31 H 1.09002 * 109.47016 * 300.00129 * 6 4 3 32 32 H 1.09001 * 109.46858 * 60.00356 * 6 4 3 33 33 H 1.09001 * 109.47084 * 179.97438 * 6 4 3 34 34 H 1.09001 * 109.46956 * 304.99977 * 7 4 3 35 35 H 1.08994 * 109.47139 * 64.99995 * 7 4 3 36 36 H 1.09003 * 109.61168 * 244.54792 * 11 10 8 37 37 H 1.09003 * 109.60809 * 5.05108 * 11 10 8 38 38 H 1.09001 * 109.73716 * 289.85117 * 12 11 10 39 39 H 1.08995 * 109.53043 * 169.30729 * 12 11 10 40 40 H 0.96998 * 120.00446 * 179.97438 * 17 16 14 41 41 H 1.09002 * 109.61011 * 295.48181 * 22 13 12 42 42 H 1.09007 * 109.75315 * 175.05560 * 22 13 12 43 43 H 1.09003 * 109.61100 * 354.94744 * 23 10 8 44 44 H 1.09002 * 109.61007 * 115.28191 * 23 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5701 1.4425 -0.0006 5 1 3.9330 0.8531 -0.8426 6 6 4.0806 0.8327 1.3065 7 6 4.0800 2.8795 -0.1264 8 6 5.5818 2.8704 -0.2506 9 8 6.1850 1.8183 -0.2390 10 7 6.2549 4.0316 -0.3734 11 6 5.5369 5.3138 -0.3939 12 6 6.1167 6.2128 0.7113 13 7 7.5812 6.2191 0.5894 14 6 8.2649 7.3989 0.4636 15 1 9.2092 7.4227 -0.0600 16 6 7.7444 8.5643 1.0092 17 7 6.8010 8.4983 1.9246 18 14 8.3827 10.2265 0.4443 19 1 9.4340 10.0289 -0.5858 20 1 7.2655 11.0152 -0.1344 21 1 8.9559 10.9567 1.6034 22 6 8.2988 4.9367 0.6043 23 6 7.7195 4.0381 -0.4947 24 1 -0.3633 0.5139 0.8899 25 1 -0.3632 0.5138 -0.8901 26 1 -0.3633 -1.0277 0.0005 27 1 1.8934 -0.5138 0.8900 28 1 1.8934 -0.5139 -0.8899 29 1 1.6767 1.9562 -0.8900 30 1 1.6767 1.9563 0.8899 31 1 3.7175 1.4221 2.1485 32 1 3.7173 -0.1911 1.3960 33 1 5.1706 0.8323 1.3058 34 1 3.6450 3.3431 -1.0118 35 1 3.7920 3.4460 0.7591 36 1 5.6690 5.7916 -1.3647 37 1 4.4764 5.1422 -0.2093 38 1 5.8327 5.8236 1.6891 39 1 5.7353 7.2270 0.5935 40 1 6.4374 9.3126 2.3061 41 1 8.1702 4.4568 1.5745 42 1 9.3593 5.1058 0.4176 43 1 8.1008 3.0238 -0.3767 44 1 8.0037 4.4241 -1.4737 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000353665464.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:43:43 Heat of formation + Delta-G solvation = -34.997819 kcal Electronic energy + Delta-G solvation = -21305.738141 eV Core-core repulsion = 18257.924026 eV Total energy + Delta-G solvation = -3047.814115 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -39.78306 -37.30611 -36.29804 -33.84807 -32.77747 -31.40054 -30.17531 -28.14971 -26.63055 -26.47889 -23.67144 -22.90324 -22.00272 -20.58471 -19.79772 -18.43910 -17.11250 -16.07209 -15.79286 -15.30075 -15.05591 -14.77782 -14.14222 -14.05277 -13.68001 -13.48793 -13.34539 -13.26549 -13.00959 -12.56534 -12.30006 -11.89141 -11.69169 -11.66110 -11.46221 -11.34281 -10.97439 -10.87629 -10.75089 -10.66683 -10.53183 -10.48722 -10.43885 -10.24195 -9.99116 -9.84370 -9.20881 -8.61303 -8.20436 -6.72956 -5.87876 -3.31886 3.05248 3.31840 3.40290 3.42264 3.50557 4.42617 4.64693 4.79362 4.83895 5.09227 5.10717 5.19910 5.26971 5.33618 5.47368 5.54255 5.64260 5.69506 5.74181 5.80130 5.84239 5.87725 5.88987 5.93554 5.95842 6.09745 6.12315 6.13272 6.18744 6.27065 6.35527 6.43197 6.47113 6.60466 6.78368 6.94343 7.21127 7.44207 7.70755 7.96993 8.33699 8.63372 9.10027 9.72665 10.29803 11.19859 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.032788 B = 0.003900 C = 0.003638 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 853.755327 B = 7178.457978 C = 7693.984661 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.126 4.126 3 C -0.116 4.116 4 C -0.074 4.074 5 H 0.075 0.925 6 C -0.153 4.153 7 C -0.136 4.136 8 C 0.510 3.490 9 O -0.558 6.558 10 N -0.599 5.599 11 C 0.079 3.921 12 C 0.158 3.842 13 N -0.592 5.592 14 C -0.254 4.254 15 H 0.068 0.932 16 C 0.003 3.997 17 N -0.902 5.902 18 Si 0.904 3.096 19 H -0.277 1.277 20 H -0.288 1.288 21 H -0.290 1.290 22 C 0.132 3.868 23 C 0.095 3.905 24 H 0.053 0.947 25 H 0.052 0.948 26 H 0.051 0.949 27 H 0.064 0.936 28 H 0.060 0.940 29 H 0.060 0.940 30 H 0.062 0.938 31 H 0.046 0.954 32 H 0.050 0.950 33 H 0.075 0.925 34 H 0.088 0.912 35 H 0.092 0.908 36 H 0.063 0.937 37 H 0.072 0.928 38 H 0.023 0.977 39 H 0.100 0.900 40 H 0.255 0.745 41 H 0.023 0.977 42 H 0.065 0.935 43 H 0.081 0.919 44 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.887 -11.711 -4.257 15.907 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.163 4.163 3 C -0.154 4.154 4 C -0.092 4.092 5 H 0.093 0.907 6 C -0.210 4.210 7 C -0.176 4.176 8 C 0.298 3.702 9 O -0.438 6.438 10 N -0.331 5.331 11 C -0.045 4.045 12 C 0.031 3.969 13 N -0.315 5.315 14 C -0.384 4.384 15 H 0.086 0.914 16 C -0.196 4.196 17 N -0.546 5.546 18 Si 0.733 3.267 19 H -0.202 1.202 20 H -0.215 1.215 21 H -0.217 1.217 22 C 0.005 3.995 23 C -0.029 4.029 24 H 0.072 0.928 25 H 0.071 0.929 26 H 0.070 0.930 27 H 0.083 0.917 28 H 0.078 0.922 29 H 0.079 0.921 30 H 0.081 0.919 31 H 0.065 0.935 32 H 0.069 0.931 33 H 0.094 0.906 34 H 0.106 0.894 35 H 0.110 0.890 36 H 0.081 0.919 37 H 0.090 0.910 38 H 0.041 0.959 39 H 0.118 0.882 40 H 0.065 0.935 41 H 0.041 0.959 42 H 0.084 0.916 43 H 0.099 0.901 44 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -9.620 -12.089 -4.158 15.999 hybrid contribution 0.215 1.131 -0.191 1.167 sum -9.405 -10.957 -4.349 15.081 Atomic orbital electron populations 1.21784 0.96180 1.01314 1.01708 1.21569 0.95414 0.97148 1.02173 1.21691 0.94962 0.96747 1.01961 1.20882 0.94131 0.94551 0.99682 0.90694 1.21984 1.03267 0.99769 0.95986 1.21754 0.92788 0.99101 1.03916 1.20623 0.90006 0.83348 0.76202 1.90590 1.70445 1.30753 1.52031 1.48108 1.07727 1.06325 1.70924 1.22769 0.95371 0.84240 1.02133 1.21255 0.83933 0.99031 0.92672 1.43994 1.01272 1.00904 1.85285 1.19251 1.05315 0.85090 1.28716 0.91440 1.25066 0.99494 0.98714 0.96340 1.70024 1.30698 1.27117 1.26801 0.86205 0.78251 0.84053 0.78152 1.20208 1.21472 1.21674 1.21279 0.95923 0.87405 0.94884 1.22159 0.79539 1.01017 1.00155 0.92813 0.92883 0.93036 0.91722 0.92161 0.92104 0.91896 0.93460 0.93090 0.90629 0.89387 0.88990 0.91889 0.90957 0.95852 0.88241 0.93544 0.95942 0.91617 0.90084 0.92163 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.19 9.91 37.16 0.37 -0.82 16 2 C -0.13 -1.12 5.69 -26.73 -0.15 -1.28 16 3 C -0.12 -1.13 4.68 -26.73 -0.13 -1.26 16 4 C -0.07 -0.89 2.04 -90.62 -0.18 -1.08 16 5 H 0.07 1.00 7.96 -51.93 -0.41 0.58 16 6 C -0.15 -1.97 8.69 37.16 0.32 -1.65 16 7 C -0.14 -1.79 3.52 -27.88 -0.10 -1.89 16 8 C 0.51 8.75 7.41 -10.99 -0.08 8.67 16 9 O -0.56 -10.89 13.37 5.55 0.07 -10.81 16 10 N -0.60 -10.86 2.94 -172.24 -0.51 -11.37 16 11 C 0.08 1.41 6.54 -3.36 -0.02 1.39 16 12 C 0.16 3.55 5.53 -3.37 -0.02 3.53 16 13 N -0.59 -14.44 2.97 -171.80 -0.51 -14.95 16 14 C -0.25 -6.76 9.58 -15.06 -0.14 -6.90 16 15 H 0.07 1.77 7.89 -52.48 -0.41 1.36 16 16 C 0.00 0.07 4.90 -17.43 -0.09 -0.02 16 17 N -0.90 -25.24 11.20 55.49 0.62 -24.62 16 18 Si 0.90 21.01 29.59 -169.99 -5.03 15.98 16 19 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 20 H -0.29 -6.69 7.11 56.52 0.40 -6.28 16 21 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 22 C 0.13 2.79 6.67 -3.62 -0.02 2.77 16 23 C 0.10 1.78 6.59 -3.62 -0.02 1.76 16 24 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 25 H 0.05 0.40 8.14 -51.93 -0.42 -0.03 16 26 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 27 H 0.06 0.59 6.57 -51.93 -0.34 0.25 16 28 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 29 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 30 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.05 0.58 6.57 -51.93 -0.34 0.24 16 33 H 0.07 1.19 5.95 -51.93 -0.31 0.88 16 34 H 0.09 1.02 7.90 -51.93 -0.41 0.61 16 35 H 0.09 1.17 7.73 -51.93 -0.40 0.77 16 36 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 37 H 0.07 1.06 5.91 -51.93 -0.31 0.76 16 38 H 0.02 0.56 8.14 -51.93 -0.42 0.14 16 39 H 0.10 2.47 5.99 -51.93 -0.31 2.16 16 40 H 0.25 6.87 8.31 -40.82 -0.34 6.53 16 41 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 42 H 0.07 1.33 7.94 -51.93 -0.41 0.91 16 43 H 0.08 1.48 6.99 -51.93 -0.36 1.12 16 44 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 LS Contribution 338.40 15.07 5.10 5.10 Total: -1.00 -29.52 338.40 -8.33 -37.85 By element: Atomic # 1 Polarization: 7.40 SS G_CDS: -7.81 Total: -0.41 kcal Atomic # 6 Polarization: 3.50 SS G_CDS: -0.27 Total: 3.23 kcal Atomic # 7 Polarization: -50.54 SS G_CDS: -0.39 Total: -50.93 kcal Atomic # 8 Polarization: -10.89 SS G_CDS: 0.07 Total: -10.81 kcal Atomic # 14 Polarization: 21.01 SS G_CDS: -5.03 Total: 15.98 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -29.52 -8.33 -37.85 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000353665464.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.854 kcal (2) G-P(sol) polarization free energy of solvation -29.525 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.670 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.327 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.852 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.998 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds