Wall clock time and date at job start Mon Mar 30 2020 00:43:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52997 * 109.47190 * 2 1 4 4 C 1.53003 * 109.47190 * 180.02562 * 3 2 1 5 5 H 1.08997 * 109.46932 * 54.99533 * 4 3 2 6 6 C 1.53002 * 109.46905 * 294.99730 * 4 3 2 7 7 C 1.52998 * 109.47137 * 174.99705 * 4 3 2 8 8 C 1.50698 * 109.46952 * 184.99939 * 7 4 3 9 9 O 1.21286 * 120.00184 * 359.97438 * 8 7 4 10 10 N 1.34776 * 120.00099 * 180.02562 * 8 7 4 11 11 C 1.46967 * 120.59401 * 359.71776 * 10 8 7 12 12 C 1.53812 * 108.40078 * 124.75982 * 11 10 8 13 13 N 1.46960 * 108.57675 * 49.63759 * 12 11 10 14 14 C 1.36933 * 120.59171 * 124.62652 * 13 12 11 15 15 H 1.08006 * 120.00039 * 208.17497 * 14 13 12 16 16 C 1.38811 * 120.00237 * 28.17437 * 14 13 12 17 17 N 1.31614 * 119.99915 * 17.56902 * 16 14 13 18 18 Si 1.86798 * 120.00332 * 197.57005 * 16 14 13 19 19 H 1.48501 * 109.47265 * 0.02562 * 18 16 14 20 20 H 1.48503 * 109.47280 * 119.99878 * 18 16 14 21 21 H 1.48502 * 109.47267 * 240.00272 * 18 16 14 22 22 C 1.46961 * 118.81351 * 304.64766 * 13 12 11 23 23 C 1.46960 * 120.59732 * 179.97438 * 10 8 7 24 24 H 1.08998 * 109.47217 * 300.00238 * 1 2 3 25 25 H 1.09001 * 109.46556 * 60.00543 * 1 2 3 26 26 H 1.09001 * 109.47140 * 180.02562 * 1 2 3 27 27 H 1.09002 * 109.47077 * 119.99491 * 2 1 3 28 28 H 1.08998 * 109.47217 * 239.99762 * 2 1 3 29 29 H 1.09002 * 109.46694 * 299.99725 * 3 2 1 30 30 H 1.08998 * 109.47235 * 59.99773 * 3 2 1 31 31 H 1.09002 * 109.47016 * 300.00129 * 6 4 3 32 32 H 1.09001 * 109.46858 * 60.00356 * 6 4 3 33 33 H 1.09001 * 109.47084 * 179.97438 * 6 4 3 34 34 H 1.09001 * 109.46956 * 304.99977 * 7 4 3 35 35 H 1.08994 * 109.47139 * 64.99995 * 7 4 3 36 36 H 1.09003 * 109.61168 * 244.54792 * 11 10 8 37 37 H 1.09003 * 109.60809 * 5.05108 * 11 10 8 38 38 H 1.09001 * 109.73716 * 289.85117 * 12 11 10 39 39 H 1.08995 * 109.53043 * 169.30729 * 12 11 10 40 40 H 0.96998 * 120.00446 * 179.97438 * 17 16 14 41 41 H 1.09002 * 109.61011 * 295.48181 * 22 13 12 42 42 H 1.09007 * 109.75315 * 175.05560 * 22 13 12 43 43 H 1.09003 * 109.61100 * 354.94744 * 23 10 8 44 44 H 1.09002 * 109.61007 * 115.28191 * 23 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5701 1.4425 -0.0006 5 1 3.9330 0.8531 -0.8426 6 6 4.0806 0.8327 1.3065 7 6 4.0800 2.8795 -0.1264 8 6 5.5818 2.8704 -0.2506 9 8 6.1850 1.8183 -0.2390 10 7 6.2549 4.0316 -0.3734 11 6 5.5369 5.3138 -0.3939 12 6 6.1167 6.2128 0.7113 13 7 7.5812 6.2191 0.5894 14 6 8.2649 7.3989 0.4636 15 1 9.2092 7.4227 -0.0600 16 6 7.7444 8.5643 1.0092 17 7 6.8010 8.4983 1.9246 18 14 8.3827 10.2265 0.4443 19 1 9.4340 10.0289 -0.5858 20 1 7.2655 11.0152 -0.1344 21 1 8.9559 10.9567 1.6034 22 6 8.2988 4.9367 0.6043 23 6 7.7195 4.0381 -0.4947 24 1 -0.3633 0.5139 0.8899 25 1 -0.3632 0.5138 -0.8901 26 1 -0.3633 -1.0277 0.0005 27 1 1.8934 -0.5138 0.8900 28 1 1.8934 -0.5139 -0.8899 29 1 1.6767 1.9562 -0.8900 30 1 1.6767 1.9563 0.8899 31 1 3.7175 1.4221 2.1485 32 1 3.7173 -0.1911 1.3960 33 1 5.1706 0.8323 1.3058 34 1 3.6450 3.3431 -1.0118 35 1 3.7920 3.4460 0.7591 36 1 5.6690 5.7916 -1.3647 37 1 4.4764 5.1422 -0.2093 38 1 5.8327 5.8236 1.6891 39 1 5.7353 7.2270 0.5935 40 1 6.4374 9.3126 2.3061 41 1 8.1702 4.4568 1.5745 42 1 9.3593 5.1058 0.4176 43 1 8.1008 3.0238 -0.3767 44 1 8.0037 4.4241 -1.4737 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000353665464.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:43:42 Heat of formation + Delta-G solvation = -50.778891 kcal Electronic energy + Delta-G solvation = -21306.422460 eV Core-core repulsion = 18257.924026 eV Total energy + Delta-G solvation = -3048.498434 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.16809 -38.71980 -37.45910 -35.58010 -33.73918 -33.11322 -31.84205 -29.48015 -28.09517 -27.42031 -25.41965 -24.46221 -23.05841 -21.93253 -20.89445 -19.95704 -18.70044 -17.71218 -17.06605 -16.64152 -16.48055 -16.14571 -15.50211 -15.42757 -15.19135 -14.91363 -14.86182 -14.39078 -14.11105 -13.97879 -13.35318 -13.25028 -13.13631 -12.82281 -12.70658 -12.57399 -12.47370 -12.31100 -12.19640 -12.03259 -11.90270 -11.78927 -11.65789 -11.57337 -11.40992 -11.22947 -10.66391 -10.52010 -9.77862 -8.65824 -7.89276 -5.37318 1.47567 1.50588 1.60578 1.70202 2.11132 2.51350 3.25186 3.57982 3.60227 3.82589 3.99290 4.16394 4.24119 4.29261 4.31773 4.39514 4.45238 4.56030 4.58814 4.67863 4.69449 4.75716 4.79529 4.82080 4.84998 4.96310 5.00096 5.06148 5.09425 5.20085 5.24455 5.27734 5.34469 5.46290 5.54502 5.57405 5.60214 5.61927 5.69034 6.35126 6.56217 7.10537 7.25379 7.77961 8.31607 9.15897 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.032788 B = 0.003900 C = 0.003638 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 853.755327 B = 7178.457978 C = 7693.984661 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.126 4.126 3 C -0.109 4.109 4 C -0.069 4.069 5 H 0.062 0.938 6 C -0.151 4.151 7 C -0.132 4.132 8 C 0.506 3.494 9 O -0.583 6.583 10 N -0.606 5.606 11 C 0.096 3.904 12 C 0.162 3.838 13 N -0.609 5.609 14 C -0.266 4.266 15 H 0.067 0.933 16 C -0.045 4.045 17 N -0.932 5.932 18 Si 0.969 3.031 19 H -0.269 1.269 20 H -0.286 1.286 21 H -0.295 1.295 22 C 0.133 3.867 23 C 0.106 3.894 24 H 0.055 0.945 25 H 0.056 0.944 26 H 0.056 0.944 27 H 0.060 0.940 28 H 0.058 0.942 29 H 0.072 0.928 30 H 0.067 0.933 31 H 0.051 0.949 32 H 0.063 0.937 33 H 0.043 0.957 34 H 0.114 0.886 35 H 0.101 0.899 36 H 0.069 0.931 37 H 0.109 0.891 38 H -0.001 1.001 39 H 0.075 0.925 40 H 0.252 0.748 41 H 0.006 0.994 42 H 0.070 0.930 43 H 0.083 0.917 44 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.245 -11.895 -5.439 17.248 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.164 4.164 3 C -0.147 4.147 4 C -0.088 4.088 5 H 0.081 0.919 6 C -0.208 4.208 7 C -0.171 4.171 8 C 0.296 3.704 9 O -0.465 6.465 10 N -0.338 5.338 11 C -0.028 4.028 12 C 0.036 3.964 13 N -0.333 5.333 14 C -0.396 4.396 15 H 0.085 0.915 16 C -0.241 4.241 17 N -0.577 5.577 18 Si 0.797 3.203 19 H -0.193 1.193 20 H -0.212 1.212 21 H -0.222 1.222 22 C 0.006 3.994 23 C -0.019 4.019 24 H 0.074 0.926 25 H 0.076 0.924 26 H 0.075 0.925 27 H 0.079 0.921 28 H 0.077 0.923 29 H 0.091 0.909 30 H 0.086 0.914 31 H 0.070 0.930 32 H 0.082 0.918 33 H 0.062 0.938 34 H 0.132 0.868 35 H 0.119 0.881 36 H 0.087 0.913 37 H 0.127 0.873 38 H 0.017 0.983 39 H 0.093 0.907 40 H 0.061 0.939 41 H 0.024 0.976 42 H 0.089 0.911 43 H 0.102 0.898 44 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -10.983 -12.298 -5.355 17.336 hybrid contribution 0.686 1.112 0.234 1.328 sum -10.296 -11.186 -5.121 16.043 Atomic orbital electron populations 1.21766 0.95165 1.01858 1.02026 1.21567 0.96293 0.96573 1.01941 1.21640 0.92791 0.97486 1.02774 1.20852 0.95846 0.93549 0.98563 0.91910 1.21939 1.01106 1.00905 0.96825 1.21840 0.89571 1.00250 1.05450 1.21356 0.91640 0.82434 0.74939 1.90587 1.71427 1.31580 1.52860 1.48208 1.07460 1.06848 1.71328 1.22562 0.96869 0.83119 1.00280 1.21113 0.83303 0.98676 0.93305 1.44272 1.02233 1.01334 1.85472 1.19537 1.05519 0.86183 1.28317 0.91482 1.25782 1.00053 1.01765 0.96521 1.70163 1.31991 1.27649 1.27943 0.85198 0.77775 0.79876 0.77474 1.19301 1.21218 1.22208 1.21328 0.96323 0.86614 0.95091 1.21941 0.80328 1.00333 0.99283 0.92610 0.92440 0.92462 0.92089 0.92347 0.90943 0.91381 0.93003 0.91849 0.93815 0.86818 0.88075 0.91292 0.87302 0.98262 0.90659 0.93856 0.97555 0.91129 0.89821 0.91403 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.98 9.91 71.98 0.71 -1.27 16 2 C -0.13 -1.98 5.69 30.59 0.17 -1.80 16 3 C -0.11 -1.83 4.68 30.59 0.14 -1.69 16 4 C -0.07 -1.54 2.04 -10.79 -0.02 -1.56 16 5 H 0.06 1.57 7.96 -2.39 -0.02 1.55 16 6 C -0.15 -3.72 8.69 71.98 0.63 -3.10 16 7 C -0.13 -3.13 3.52 29.85 0.10 -3.03 16 8 C 0.51 16.64 7.41 87.66 0.65 17.29 16 9 O -0.58 -22.42 13.37 -3.05 -0.04 -22.46 16 10 N -0.61 -21.18 2.94 -817.23 -2.40 -23.58 16 11 C 0.10 3.23 6.54 86.56 0.57 3.80 16 12 C 0.16 7.34 5.53 86.57 0.48 7.82 16 13 N -0.61 -29.94 2.97 -697.45 -2.07 -32.01 16 14 C -0.27 -14.17 9.58 84.03 0.80 -13.36 16 15 H 0.07 3.51 7.89 -2.91 -0.02 3.48 16 16 C -0.05 -2.44 4.90 84.86 0.42 -2.02 16 17 N -0.93 -52.85 11.20 21.65 0.24 -52.61 16 18 Si 0.97 43.25 29.59 68.60 2.03 45.28 16 19 H -0.27 -11.49 7.11 99.48 0.71 -10.78 16 20 H -0.29 -12.56 7.11 99.48 0.71 -11.85 16 21 H -0.29 -13.33 7.11 99.48 0.71 -12.62 16 22 C 0.13 5.65 6.67 86.40 0.58 6.23 16 23 C 0.11 3.87 6.59 86.40 0.57 4.44 16 24 H 0.05 0.71 8.14 -2.39 -0.02 0.69 16 25 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 26 H 0.06 0.68 8.14 -2.39 -0.02 0.67 16 27 H 0.06 0.99 6.57 -2.39 -0.02 0.98 16 28 H 0.06 0.93 8.14 -2.39 -0.02 0.92 16 29 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 30 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 31 H 0.05 1.21 8.14 -2.39 -0.02 1.19 16 32 H 0.06 1.37 6.57 -2.39 -0.02 1.35 16 33 H 0.04 1.36 5.95 -2.39 -0.01 1.35 16 34 H 0.11 2.17 7.90 -2.39 -0.02 2.15 16 35 H 0.10 2.28 7.73 -2.39 -0.02 2.27 16 36 H 0.07 2.29 8.14 -2.39 -0.02 2.27 16 37 H 0.11 2.87 5.91 -2.39 -0.01 2.86 16 38 H 0.00 -0.04 8.14 -2.39 -0.02 -0.06 16 39 H 0.08 3.78 5.99 -2.39 -0.01 3.76 16 40 H 0.25 13.80 8.31 -92.71 -0.77 13.03 16 41 H 0.01 0.29 8.14 -2.39 -0.02 0.27 16 42 H 0.07 2.87 7.94 -2.38 -0.02 2.85 16 43 H 0.08 3.03 6.99 -2.39 -0.02 3.01 16 44 H 0.07 2.39 8.14 -2.39 -0.02 2.37 16 Total: -1.00 -63.65 338.40 4.51 -59.15 By element: Atomic # 1 Polarization: 13.56 SS G_CDS: 0.95 Total: 14.51 kcal Atomic # 6 Polarization: 5.93 SS G_CDS: 5.80 Total: 11.73 kcal Atomic # 7 Polarization: -103.97 SS G_CDS: -4.23 Total: -108.20 kcal Atomic # 8 Polarization: -22.42 SS G_CDS: -0.04 Total: -22.46 kcal Atomic # 14 Polarization: 43.25 SS G_CDS: 2.03 Total: 45.28 kcal Total: -63.65 4.51 -59.15 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000353665464.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.369 kcal (2) G-P(sol) polarization free energy of solvation -63.654 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.285 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.506 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.147 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.779 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds