Wall clock time and date at job start Mon Mar 30 2020 00:52:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53003 * 109.47022 * 2 1 4 4 C 1.53000 * 109.46982 * 119.99986 * 2 1 3 5 5 H 1.09000 * 109.46851 * 62.12428 * 4 2 1 6 6 C 1.50691 * 109.47306 * 302.12173 * 4 2 1 7 7 O 1.21296 * 120.00215 * 274.35645 * 6 4 2 8 8 N 1.34780 * 120.00376 * 94.35367 * 6 4 2 9 9 C 1.46500 * 119.99455 * 356.57897 * 8 6 4 10 10 C 1.37091 * 120.00433 * 176.57859 * 8 6 4 11 11 H 1.08002 * 119.99821 * 6.89471 * 10 8 6 12 12 C 1.38954 * 120.00111 * 186.90299 * 10 8 6 13 13 N 1.31406 * 119.99799 * 11.31006 * 12 10 8 14 14 Si 1.86799 * 119.99909 * 191.31417 * 12 10 8 15 15 H 1.48496 * 109.47571 * 59.99416 * 14 12 10 16 16 H 1.48503 * 109.46968 * 179.97438 * 14 12 10 17 17 H 1.48503 * 109.47027 * 299.99423 * 14 12 10 18 18 N 1.46902 * 109.46913 * 182.11876 * 4 2 1 19 19 C 1.46839 * 111.00459 * 304.21265 * 18 4 2 20 20 C 1.53038 * 109.52573 * 174.16163 * 19 18 4 21 21 C 1.53116 * 109.27800 * 59.17969 * 20 19 18 22 22 C 1.53126 * 109.15877 * 302.34344 * 21 20 19 23 23 C 1.46848 * 110.99980 * 180.02562 * 18 4 2 24 24 H 1.09002 * 109.46926 * 57.94339 * 1 2 3 25 25 H 1.09003 * 109.47027 * 177.93664 * 1 2 3 26 26 H 1.08999 * 109.47493 * 297.94169 * 1 2 3 27 27 H 1.09003 * 109.47011 * 239.99932 * 2 1 3 28 28 H 1.09004 * 109.47013 * 179.97438 * 3 2 1 29 29 H 1.09001 * 109.46825 * 299.99610 * 3 2 1 30 30 H 1.08997 * 109.46869 * 60.00119 * 3 2 1 31 31 H 1.09002 * 109.47227 * 354.49821 * 9 8 6 32 32 H 1.08995 * 109.47348 * 114.50199 * 9 8 6 33 33 H 1.09005 * 109.47081 * 234.49972 * 9 8 6 34 34 H 0.97006 * 119.99875 * 180.02562 * 13 12 10 35 35 H 1.09003 * 109.46420 * 294.17927 * 19 18 4 36 36 H 1.09003 * 109.46575 * 54.13963 * 19 18 4 37 37 H 1.09001 * 109.49811 * 299.23575 * 20 19 18 38 38 H 1.09005 * 109.50247 * 179.11819 * 20 19 18 39 39 H 1.09004 * 109.52232 * 182.44625 * 21 20 19 40 40 H 1.09000 * 109.57529 * 62.28534 * 21 20 19 41 41 H 1.08993 * 109.50198 * 297.71498 * 22 21 20 42 42 H 1.09000 * 109.53307 * 177.61457 * 22 21 20 43 43 H 1.09001 * 109.46392 * 305.85846 * 23 18 4 44 44 H 1.08998 * 109.46211 * 65.83344 * 23 18 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7213 1.2492 5 1 1.7080 -1.7593 1.2304 6 6 1.4952 -0.0419 2.4791 7 8 2.0738 0.9142 2.9504 8 7 0.3649 -0.4967 3.0554 9 6 -0.3749 -1.6036 2.4440 10 6 -0.0926 0.0764 4.2137 11 1 0.3874 0.9615 4.6044 12 6 -1.1737 -0.4815 4.8851 13 7 -1.6166 -1.6705 4.5435 14 14 -1.9974 0.4589 6.2732 15 1 -2.5231 1.7472 5.7547 16 1 -3.1174 -0.3477 6.8211 17 1 -1.0067 0.7248 7.3470 18 7 3.5081 -0.6771 1.2751 19 6 4.0734 -1.2417 0.0432 20 6 5.5914 -1.0475 0.0411 21 6 6.1918 -1.7431 1.2659 22 6 5.5511 -1.1705 2.5333 23 6 4.0343 -1.3618 2.4628 24 1 -0.3633 0.5455 -0.8710 25 1 -0.3633 -1.0270 -0.0370 26 1 -0.3634 0.4815 0.9078 27 1 1.8933 -0.5139 -0.8900 28 1 3.1300 1.4425 0.0005 29 1 1.6767 1.9563 -0.8900 30 1 1.6766 1.9563 0.8900 31 1 0.0813 -1.8613 1.4881 32 1 -0.3459 -2.4693 3.1056 33 1 -1.4104 -1.3036 2.2832 34 1 -2.3716 -2.0599 5.0120 35 1 3.8434 -2.3060 -0.0075 36 1 3.6413 -0.7356 -0.8201 37 1 5.8220 0.0172 0.0777 38 1 6.0125 -1.4807 -0.8663 39 1 7.2678 -1.5706 1.2919 40 1 5.9957 -2.8139 1.2104 41 1 5.7812 -0.1078 2.6091 42 1 5.9433 -1.6910 3.4070 43 1 3.5738 -0.9428 3.3575 44 1 3.8047 -2.4255 2.4003 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000354764743.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:52:31 Heat of formation + Delta-G solvation = -21.960753 kcal Electronic energy + Delta-G solvation = -22756.821551 eV Core-core repulsion = 19709.572765 eV Total energy + Delta-G solvation = -3047.248786 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -39.82721 -37.70770 -35.20516 -34.55904 -32.09443 -31.46385 -30.51333 -27.27423 -26.53552 -25.77532 -24.19617 -23.00211 -22.59310 -20.36681 -19.49255 -17.93339 -16.78906 -16.23414 -16.04028 -15.05723 -14.60055 -14.29564 -14.00921 -13.86298 -13.71297 -13.26536 -13.13068 -12.92567 -12.49204 -12.13578 -11.96508 -11.80494 -11.61222 -11.51185 -11.19989 -10.98694 -10.94264 -10.89325 -10.71492 -10.56845 -10.40663 -10.37879 -10.25610 -10.12288 -9.86739 -9.83219 -8.99370 -8.21584 -7.73060 -7.69164 -6.18126 -3.74881 3.20849 3.26484 3.30972 3.87521 4.12559 4.29414 4.87289 5.00910 5.08272 5.11839 5.18071 5.38596 5.47294 5.52765 5.59703 5.64857 5.71554 5.81582 5.84602 5.92490 6.00376 6.03620 6.08691 6.14775 6.18071 6.22262 6.31307 6.33949 6.48361 6.52244 6.52874 6.57201 6.63044 6.83458 7.04702 7.05990 7.42853 7.46971 7.56852 7.62520 8.15654 8.57413 9.27274 9.52882 10.09785 10.76087 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.023935 B = 0.006231 C = 0.005612 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1169.544907 B = 4492.357644 C = 4988.158851 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.079 4.079 3 C -0.136 4.136 4 C 0.077 3.923 5 H 0.048 0.952 6 C 0.457 3.543 7 O -0.572 6.572 8 N -0.451 5.451 9 C 0.106 3.894 10 C -0.299 4.299 11 H 0.102 0.898 12 C 0.026 3.974 13 N -0.889 5.889 14 Si 0.927 3.073 15 H -0.275 1.275 16 H -0.285 1.285 17 H -0.274 1.274 18 N -0.508 5.508 19 C 0.051 3.949 20 C -0.114 4.114 21 C -0.120 4.120 22 C -0.113 4.113 23 C 0.057 3.943 24 H 0.050 0.950 25 H 0.056 0.944 26 H 0.070 0.930 27 H 0.065 0.935 28 H 0.063 0.937 29 H 0.036 0.964 30 H 0.067 0.933 31 H 0.030 0.970 32 H 0.076 0.924 33 H 0.055 0.945 34 H 0.265 0.735 35 H 0.025 0.975 36 H 0.077 0.923 37 H 0.070 0.930 38 H 0.060 0.940 39 H 0.058 0.942 40 H 0.055 0.945 41 H 0.071 0.929 42 H 0.061 0.939 43 H 0.085 0.915 44 H 0.023 0.977 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.859 -2.492 -9.404 12.507 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.099 4.099 3 C -0.193 4.193 4 C -0.034 4.034 5 H 0.066 0.934 6 C 0.244 3.756 7 O -0.456 6.456 8 N -0.171 5.171 9 C -0.037 4.037 10 C -0.427 4.427 11 H 0.120 0.880 12 C -0.175 4.175 13 N -0.530 5.530 14 Si 0.754 3.246 15 H -0.200 1.200 16 H -0.210 1.210 17 H -0.199 1.199 18 N -0.233 5.233 19 C -0.077 4.077 20 C -0.151 4.151 21 C -0.157 4.157 22 C -0.150 4.150 23 C -0.071 4.071 24 H 0.069 0.931 25 H 0.075 0.925 26 H 0.089 0.911 27 H 0.084 0.916 28 H 0.082 0.918 29 H 0.055 0.945 30 H 0.086 0.914 31 H 0.048 0.952 32 H 0.095 0.905 33 H 0.074 0.926 34 H 0.075 0.925 35 H 0.044 0.956 36 H 0.095 0.905 37 H 0.089 0.911 38 H 0.079 0.921 39 H 0.077 0.923 40 H 0.073 0.927 41 H 0.090 0.910 42 H 0.079 0.921 43 H 0.104 0.896 44 H 0.041 0.959 Dipole moment (debyes) X Y Z Total from point charges 8.105 -1.663 -9.045 12.258 hybrid contribution -0.933 -0.756 0.632 1.357 sum 7.171 -2.419 -8.413 11.316 Atomic orbital electron populations 1.22117 0.94914 1.01788 1.02597 1.21054 0.95674 0.97581 0.95543 1.21714 1.01756 0.94704 1.01124 1.21672 0.87689 0.98106 0.95973 0.93427 1.19486 0.82489 0.87321 0.86271 1.90506 1.60126 1.29141 1.65793 1.43708 1.20731 1.30544 1.22118 1.21961 0.95572 0.91574 0.94629 1.19699 1.12791 1.10296 0.99890 0.87998 1.25242 0.97574 0.95749 0.98977 1.70094 1.26619 1.14189 1.42116 0.85986 0.78701 0.79221 0.80712 1.20030 1.21044 1.19949 1.61585 1.05023 1.55200 1.01501 1.22168 0.95075 0.96894 0.93571 1.21556 0.94728 1.01495 0.97368 1.21581 0.99288 0.99423 0.95446 1.21539 0.94759 1.01890 0.96857 1.22072 0.95160 0.95356 0.94491 0.93064 0.92504 0.91106 0.91648 0.91841 0.94470 0.91364 0.95203 0.90543 0.92620 0.92479 0.95638 0.90465 0.91113 0.92117 0.92316 0.92656 0.90996 0.92050 0.89633 0.95872 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.62 7.67 37.16 0.28 -2.34 16 2 C -0.08 -1.33 2.22 -90.62 -0.20 -1.53 16 3 C -0.14 -2.35 8.60 37.16 0.32 -2.03 16 4 C 0.08 1.48 1.29 -68.87 -0.09 1.39 16 5 H 0.05 0.91 6.05 -51.93 -0.31 0.60 16 6 C 0.46 10.96 3.84 -10.99 -0.04 10.91 16 7 O -0.57 -15.56 14.40 5.54 0.08 -15.48 16 8 N -0.45 -11.48 2.57 -122.19 -0.31 -11.80 16 9 C 0.11 2.42 6.96 59.85 0.42 2.83 16 10 C -0.30 -8.32 9.54 -14.93 -0.14 -8.47 16 11 H 0.10 2.99 7.20 -52.49 -0.38 2.61 16 12 C 0.03 0.69 5.34 -17.47 -0.09 0.60 16 13 N -0.89 -23.52 9.76 55.50 0.54 -22.97 16 14 Si 0.93 21.02 29.57 -169.99 -5.03 15.99 16 15 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 16 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 17 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 18 N -0.51 -8.96 3.44 -228.09 -0.78 -9.74 16 19 C 0.05 0.72 4.95 -3.84 -0.02 0.70 16 20 C -0.11 -1.37 6.09 -26.65 -0.16 -1.54 16 21 C -0.12 -1.44 6.00 -26.61 -0.16 -1.60 16 22 C -0.11 -1.63 6.09 -26.65 -0.16 -1.80 16 23 C 0.06 1.01 5.20 -3.83 -0.02 0.99 16 24 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 25 H 0.06 0.89 6.46 -51.93 -0.34 0.56 16 26 H 0.07 1.43 6.20 -51.93 -0.32 1.11 16 27 H 0.07 0.95 6.34 -51.93 -0.33 0.62 16 28 H 0.06 1.10 7.32 -51.93 -0.38 0.72 16 29 H 0.04 0.55 8.14 -51.93 -0.42 0.13 16 30 H 0.07 1.42 6.53 -51.93 -0.34 1.09 16 31 H 0.03 0.58 3.44 -51.93 -0.18 0.40 16 32 H 0.08 1.88 6.69 -51.93 -0.35 1.53 16 33 H 0.06 1.32 7.51 -51.93 -0.39 0.93 16 34 H 0.26 6.69 8.31 -40.82 -0.34 6.35 16 35 H 0.03 0.35 8.14 -51.93 -0.42 -0.07 16 36 H 0.08 1.03 5.83 -51.93 -0.30 0.72 16 37 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 38 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 39 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 40 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 41 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 42 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 43 H 0.09 1.84 6.48 -51.93 -0.34 1.51 16 44 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 LS Contribution 320.64 15.07 4.83 4.83 Total: -1.00 -29.30 320.64 -8.06 -37.36 By element: Atomic # 1 Polarization: 11.01 SS G_CDS: -7.32 Total: 3.70 kcal Atomic # 6 Polarization: -1.81 SS G_CDS: -0.07 Total: -1.88 kcal Atomic # 7 Polarization: -43.96 SS G_CDS: -0.56 Total: -44.51 kcal Atomic # 8 Polarization: -15.56 SS G_CDS: 0.08 Total: -15.48 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -5.03 Total: 15.99 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -29.30 -8.06 -37.36 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000354764743.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.394 kcal (2) G-P(sol) polarization free energy of solvation -29.297 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.903 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.058 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.355 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.961 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds