Wall clock time and date at job start Mon Mar 30 2020 00:52:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53003 * 109.47022 * 2 1 4 4 C 1.53000 * 109.46982 * 119.99986 * 2 1 3 5 5 H 1.09000 * 109.46851 * 62.12428 * 4 2 1 6 6 C 1.50691 * 109.47306 * 302.12173 * 4 2 1 7 7 O 1.21296 * 120.00215 * 274.35645 * 6 4 2 8 8 N 1.34780 * 120.00376 * 94.35367 * 6 4 2 9 9 C 1.46500 * 119.99455 * 356.57897 * 8 6 4 10 10 C 1.37091 * 120.00433 * 176.57859 * 8 6 4 11 11 H 1.08002 * 119.99821 * 6.89471 * 10 8 6 12 12 C 1.38954 * 120.00111 * 186.90299 * 10 8 6 13 13 N 1.31406 * 119.99799 * 11.31006 * 12 10 8 14 14 Si 1.86799 * 119.99909 * 191.31417 * 12 10 8 15 15 H 1.48496 * 109.47571 * 59.99416 * 14 12 10 16 16 H 1.48503 * 109.46968 * 179.97438 * 14 12 10 17 17 H 1.48503 * 109.47027 * 299.99423 * 14 12 10 18 18 N 1.46902 * 109.46913 * 182.11876 * 4 2 1 19 19 C 1.46839 * 111.00459 * 304.21265 * 18 4 2 20 20 C 1.53038 * 109.52573 * 174.16163 * 19 18 4 21 21 C 1.53116 * 109.27800 * 59.17969 * 20 19 18 22 22 C 1.53126 * 109.15877 * 302.34344 * 21 20 19 23 23 C 1.46848 * 110.99980 * 180.02562 * 18 4 2 24 24 H 1.09002 * 109.46926 * 57.94339 * 1 2 3 25 25 H 1.09003 * 109.47027 * 177.93664 * 1 2 3 26 26 H 1.08999 * 109.47493 * 297.94169 * 1 2 3 27 27 H 1.09003 * 109.47011 * 239.99932 * 2 1 3 28 28 H 1.09004 * 109.47013 * 179.97438 * 3 2 1 29 29 H 1.09001 * 109.46825 * 299.99610 * 3 2 1 30 30 H 1.08997 * 109.46869 * 60.00119 * 3 2 1 31 31 H 1.09002 * 109.47227 * 354.49821 * 9 8 6 32 32 H 1.08995 * 109.47348 * 114.50199 * 9 8 6 33 33 H 1.09005 * 109.47081 * 234.49972 * 9 8 6 34 34 H 0.97006 * 119.99875 * 180.02562 * 13 12 10 35 35 H 1.09003 * 109.46420 * 294.17927 * 19 18 4 36 36 H 1.09003 * 109.46575 * 54.13963 * 19 18 4 37 37 H 1.09001 * 109.49811 * 299.23575 * 20 19 18 38 38 H 1.09005 * 109.50247 * 179.11819 * 20 19 18 39 39 H 1.09004 * 109.52232 * 182.44625 * 21 20 19 40 40 H 1.09000 * 109.57529 * 62.28534 * 21 20 19 41 41 H 1.08993 * 109.50198 * 297.71498 * 22 21 20 42 42 H 1.09000 * 109.53307 * 177.61457 * 22 21 20 43 43 H 1.09001 * 109.46392 * 305.85846 * 23 18 4 44 44 H 1.08998 * 109.46211 * 65.83344 * 23 18 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7213 1.2492 5 1 1.7080 -1.7593 1.2304 6 6 1.4952 -0.0419 2.4791 7 8 2.0738 0.9142 2.9504 8 7 0.3649 -0.4967 3.0554 9 6 -0.3749 -1.6036 2.4440 10 6 -0.0926 0.0764 4.2137 11 1 0.3874 0.9615 4.6044 12 6 -1.1737 -0.4815 4.8851 13 7 -1.6166 -1.6705 4.5435 14 14 -1.9974 0.4589 6.2732 15 1 -2.5231 1.7472 5.7547 16 1 -3.1174 -0.3477 6.8211 17 1 -1.0067 0.7248 7.3470 18 7 3.5081 -0.6771 1.2751 19 6 4.0734 -1.2417 0.0432 20 6 5.5914 -1.0475 0.0411 21 6 6.1918 -1.7431 1.2659 22 6 5.5511 -1.1705 2.5333 23 6 4.0343 -1.3618 2.4628 24 1 -0.3633 0.5455 -0.8710 25 1 -0.3633 -1.0270 -0.0370 26 1 -0.3634 0.4815 0.9078 27 1 1.8933 -0.5139 -0.8900 28 1 3.1300 1.4425 0.0005 29 1 1.6767 1.9563 -0.8900 30 1 1.6766 1.9563 0.8900 31 1 0.0813 -1.8613 1.4881 32 1 -0.3459 -2.4693 3.1056 33 1 -1.4104 -1.3036 2.2832 34 1 -2.3716 -2.0599 5.0120 35 1 3.8434 -2.3060 -0.0075 36 1 3.6413 -0.7356 -0.8201 37 1 5.8220 0.0172 0.0777 38 1 6.0125 -1.4807 -0.8663 39 1 7.2678 -1.5706 1.2919 40 1 5.9957 -2.8139 1.2104 41 1 5.7812 -0.1078 2.6091 42 1 5.9433 -1.6910 3.4070 43 1 3.5738 -0.9428 3.3575 44 1 3.8047 -2.4255 2.4003 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000354764743.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:52:30 Heat of formation + Delta-G solvation = -39.667357 kcal Electronic energy + Delta-G solvation = -22757.589367 eV Core-core repulsion = 19709.572765 eV Total energy + Delta-G solvation = -3048.016602 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.42279 -39.22548 -36.74032 -36.48319 -33.52565 -33.30936 -31.69306 -29.00312 -27.98462 -27.47925 -26.02903 -24.20313 -23.94656 -21.93847 -20.65194 -19.60319 -18.80278 -18.02527 -17.46098 -16.61666 -16.41143 -15.72934 -15.46911 -15.34514 -14.99446 -14.92387 -14.38121 -14.31877 -13.92169 -13.81208 -13.51644 -13.35807 -13.22049 -12.99234 -12.90677 -12.71148 -12.61212 -12.32208 -12.14872 -12.09660 -12.01712 -11.78419 -11.65797 -11.45551 -11.26925 -11.03926 -11.01647 -10.09497 -9.75690 -9.11764 -8.21472 -5.87395 1.36536 1.38566 1.48880 2.07129 2.26108 2.79633 3.11596 3.23288 3.80609 3.92690 3.95296 4.04668 4.08508 4.12248 4.33069 4.35890 4.42445 4.45437 4.60420 4.63451 4.69741 4.77468 4.85668 4.90337 4.98107 5.03444 5.06362 5.10441 5.12557 5.14813 5.19582 5.24657 5.33638 5.43953 5.45885 5.50878 5.52552 5.63178 5.98456 6.15345 6.30785 6.55202 7.22838 7.55953 8.14050 8.69781 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.023935 B = 0.006231 C = 0.005612 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1169.544907 B = 4492.357644 C = 4988.158851 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.076 4.076 3 C -0.127 4.127 4 C 0.085 3.915 5 H 0.051 0.949 6 C 0.457 3.543 7 O -0.614 6.614 8 N -0.468 5.468 9 C 0.123 3.877 10 C -0.337 4.337 11 H 0.072 0.928 12 C -0.005 4.005 13 N -0.899 5.899 14 Si 0.986 3.014 15 H -0.273 1.273 16 H -0.268 1.268 17 H -0.276 1.276 18 N -0.521 5.521 19 C 0.048 3.952 20 C -0.110 4.110 21 C -0.114 4.114 22 C -0.108 4.108 23 C 0.059 3.941 24 H 0.078 0.922 25 H 0.067 0.933 26 H 0.028 0.972 27 H 0.106 0.894 28 H 0.062 0.938 29 H 0.066 0.934 30 H 0.021 0.979 31 H 0.064 0.936 32 H 0.056 0.944 33 H 0.041 0.959 34 H 0.270 0.730 35 H 0.035 0.965 36 H 0.091 0.909 37 H 0.062 0.938 38 H 0.093 0.907 39 H 0.080 0.920 40 H 0.064 0.936 41 H 0.055 0.945 42 H 0.070 0.930 43 H 0.033 0.967 44 H 0.027 0.973 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.574 -3.629 -11.744 14.987 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.095 4.095 3 C -0.185 4.185 4 C -0.027 4.027 5 H 0.068 0.932 6 C 0.246 3.754 7 O -0.499 6.499 8 N -0.188 5.188 9 C -0.020 4.020 10 C -0.465 4.465 11 H 0.090 0.910 12 C -0.206 4.206 13 N -0.539 5.539 14 Si 0.810 3.190 15 H -0.199 1.199 16 H -0.193 1.193 17 H -0.202 1.202 18 N -0.247 5.247 19 C -0.079 4.079 20 C -0.148 4.148 21 C -0.151 4.151 22 C -0.146 4.146 23 C -0.069 4.069 24 H 0.097 0.903 25 H 0.086 0.914 26 H 0.047 0.953 27 H 0.124 0.876 28 H 0.081 0.919 29 H 0.085 0.915 30 H 0.040 0.960 31 H 0.082 0.918 32 H 0.074 0.926 33 H 0.060 0.940 34 H 0.080 0.920 35 H 0.054 0.946 36 H 0.109 0.891 37 H 0.080 0.920 38 H 0.111 0.889 39 H 0.098 0.902 40 H 0.083 0.917 41 H 0.074 0.926 42 H 0.089 0.911 43 H 0.052 0.948 44 H 0.045 0.955 Dipole moment (debyes) X Y Z Total from point charges 8.818 -2.827 -11.406 14.692 hybrid contribution -1.115 -0.384 1.361 1.801 sum 7.703 -3.212 -10.045 13.060 Atomic orbital electron populations 1.22076 0.94888 1.02407 1.01721 1.21140 0.95631 0.97161 0.95525 1.21615 1.01579 0.95043 1.00229 1.21590 0.89006 0.97676 0.94399 0.93151 1.20391 0.81432 0.86501 0.87045 1.90463 1.61129 1.31059 1.67287 1.43911 1.21680 1.31252 1.21927 1.21780 0.94924 0.89791 0.95457 1.19606 1.14440 1.10614 1.01888 0.90986 1.25948 0.97284 0.96474 1.00848 1.70189 1.26564 1.14540 1.42630 0.85102 0.77881 0.78169 0.77807 1.19879 1.19270 1.20158 1.61592 1.03895 1.56189 1.02987 1.22352 0.96420 0.97383 0.91777 1.21578 0.93217 1.01303 0.98703 1.21564 1.00265 0.99676 0.93634 1.21513 0.92523 1.01333 0.99262 1.21984 0.97118 0.94959 0.92859 0.90300 0.91394 0.95310 0.87587 0.91945 0.91530 0.95950 0.91757 0.92585 0.93984 0.91982 0.94646 0.89088 0.91957 0.88906 0.90152 0.91709 0.92589 0.91103 0.94804 0.95495 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.88 7.67 71.98 0.55 -4.32 16 2 C -0.08 -2.37 2.22 -10.79 -0.02 -2.40 16 3 C -0.13 -4.28 8.60 71.98 0.62 -3.66 16 4 C 0.08 3.22 1.29 44.17 0.06 3.28 16 5 H 0.05 1.87 6.05 -2.39 -0.01 1.86 16 6 C 0.46 22.91 3.84 87.65 0.34 23.24 16 7 O -0.61 -35.59 14.40 -3.08 -0.04 -35.64 16 8 N -0.47 -24.92 2.57 -658.89 -1.70 -26.61 16 9 C 0.12 5.73 6.96 127.77 0.89 6.62 16 10 C -0.34 -19.82 9.54 84.04 0.80 -19.02 16 11 H 0.07 4.55 7.20 -2.91 -0.02 4.53 16 12 C -0.01 -0.28 5.34 84.93 0.45 0.17 16 13 N -0.90 -48.26 9.76 21.66 0.21 -48.05 16 14 Si 0.99 43.95 29.57 68.60 2.03 45.98 16 15 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16 16 H -0.27 -11.17 7.11 99.48 0.71 -10.46 16 17 H -0.28 -12.33 7.11 99.48 0.71 -11.62 16 18 N -0.52 -18.01 3.44 -875.53 -3.01 -21.02 16 19 C 0.05 1.18 4.95 86.33 0.43 1.61 16 20 C -0.11 -2.27 6.09 30.65 0.19 -2.08 16 21 C -0.11 -2.39 6.00 30.67 0.18 -2.21 16 22 C -0.11 -3.08 6.09 30.65 0.19 -2.90 16 23 C 0.06 2.13 5.20 86.33 0.45 2.58 16 24 H 0.08 2.06 8.14 -2.39 -0.02 2.04 16 25 H 0.07 1.98 6.46 -2.39 -0.02 1.96 16 26 H 0.03 1.15 6.20 -2.39 -0.01 1.14 16 27 H 0.11 2.56 6.34 -2.39 -0.02 2.55 16 28 H 0.06 2.08 7.32 -2.38 -0.02 2.06 16 29 H 0.07 1.81 8.14 -2.39 -0.02 1.79 16 30 H 0.02 0.93 6.53 -2.39 -0.02 0.92 16 31 H 0.06 2.48 3.44 -2.39 -0.01 2.47 16 32 H 0.06 2.81 6.69 -2.39 -0.02 2.79 16 33 H 0.04 2.03 7.51 -2.38 -0.02 2.01 16 34 H 0.27 13.64 8.31 -92.70 -0.77 12.87 16 35 H 0.04 0.83 8.14 -2.39 -0.02 0.82 16 36 H 0.09 2.01 5.83 -2.39 -0.01 2.00 16 37 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16 38 H 0.09 1.38 8.14 -2.38 -0.02 1.36 16 39 H 0.08 1.39 8.14 -2.38 -0.02 1.37 16 40 H 0.06 1.27 8.14 -2.39 -0.02 1.25 16 41 H 0.06 1.75 8.14 -2.39 -0.02 1.73 16 42 H 0.07 1.84 8.14 -2.39 -0.02 1.82 16 43 H 0.03 1.55 6.48 -2.39 -0.02 1.53 16 44 H 0.03 0.93 8.14 -2.39 -0.02 0.91 16 Total: -1.00 -68.28 320.64 3.58 -64.71 By element: Atomic # 1 Polarization: 18.75 SS G_CDS: 0.97 Total: 19.73 kcal Atomic # 6 Polarization: -4.20 SS G_CDS: 5.12 Total: 0.91 kcal Atomic # 7 Polarization: -91.19 SS G_CDS: -4.50 Total: -95.69 kcal Atomic # 8 Polarization: -35.59 SS G_CDS: -0.04 Total: -35.64 kcal Atomic # 14 Polarization: 43.95 SS G_CDS: 2.03 Total: 45.98 kcal Total: -68.28 3.58 -64.71 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000354764743.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.038 kcal (2) G-P(sol) polarization free energy of solvation -68.282 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.244 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.577 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.705 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.667 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds