Wall clock time and date at job start Mon Mar 30 2020 00:52:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47166 * 2 1 4 4 C 1.53000 * 109.46808 * 240.00094 * 2 1 3 5 5 H 1.08996 * 109.47343 * 64.61191 * 4 2 1 6 6 C 1.50703 * 109.46823 * 184.61149 * 4 2 1 7 7 O 1.21285 * 120.00589 * 91.04697 * 6 4 2 8 8 N 1.34784 * 119.99752 * 271.04672 * 6 4 2 9 9 C 1.46501 * 119.99994 * 354.45259 * 8 6 4 10 10 C 1.37096 * 120.00090 * 174.45437 * 8 6 4 11 11 H 1.08001 * 119.99999 * 0.26275 * 10 8 6 12 12 C 1.38943 * 120.00156 * 180.27198 * 10 8 6 13 13 N 1.31415 * 119.99968 * 8.15455 * 12 10 8 14 14 Si 1.86802 * 120.00072 * 188.15925 * 12 10 8 15 15 H 1.48497 * 109.47216 * 89.99583 * 14 12 10 16 16 H 1.48503 * 109.47001 * 209.99714 * 14 12 10 17 17 H 1.48498 * 109.47099 * 329.99275 * 14 12 10 18 18 N 1.46897 * 109.47343 * 304.60671 * 4 2 1 19 19 C 1.46852 * 111.00186 * 299.21365 * 18 4 2 20 20 C 1.53033 * 109.52536 * 174.16184 * 19 18 4 21 21 C 1.53117 * 109.27973 * 59.17657 * 20 19 18 22 22 C 1.53118 * 109.16327 * 302.34613 * 21 20 19 23 23 C 1.46853 * 111.00349 * 175.00498 * 18 4 2 24 24 H 1.09000 * 109.47380 * 60.00438 * 1 2 3 25 25 H 1.09005 * 109.47306 * 179.97438 * 1 2 3 26 26 H 1.08999 * 109.47444 * 299.99813 * 1 2 3 27 27 H 1.08996 * 109.47054 * 120.00238 * 2 1 3 28 28 H 1.09003 * 109.47110 * 54.97206 * 3 2 1 29 29 H 1.08995 * 109.46984 * 174.97414 * 3 2 1 30 30 H 1.09003 * 109.47005 * 294.97915 * 3 2 1 31 31 H 1.09002 * 109.46935 * 355.86813 * 9 8 6 32 32 H 1.08999 * 109.46981 * 115.86475 * 9 8 6 33 33 H 1.08995 * 109.47099 * 235.86663 * 9 8 6 34 34 H 0.97000 * 120.00093 * 180.02562 * 13 12 10 35 35 H 1.08998 * 109.46113 * 294.17654 * 19 18 4 36 36 H 1.08998 * 109.46247 * 54.14062 * 19 18 4 37 37 H 1.09004 * 109.50342 * 299.23478 * 20 19 18 38 38 H 1.08998 * 109.53813 * 179.14004 * 20 19 18 39 39 H 1.09003 * 109.52452 * 182.44056 * 21 20 19 40 40 H 1.08999 * 109.57423 * 62.28347 * 21 20 19 41 41 H 1.08999 * 109.50445 * 297.71738 * 22 21 20 42 42 H 1.08996 * 109.53550 * 177.61403 * 22 21 20 43 43 H 1.09008 * 109.45706 * 305.85804 * 23 18 4 44 44 H 1.09004 * 109.46257 * 65.82971 * 23 18 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 -1.2493 5 1 1.7456 -0.1619 -2.1373 6 6 3.5426 -0.8209 -1.1935 7 8 4.0678 -1.7908 -0.6889 8 7 4.3030 0.1678 -1.7044 9 6 3.6739 1.2798 -2.4212 10 6 5.6652 0.1327 -1.5533 11 1 6.1293 -0.6892 -1.0285 12 6 6.4485 1.1548 -2.0750 13 7 5.8799 2.2310 -2.5704 14 14 8.3101 0.9991 -2.0723 15 1 8.7545 0.3516 -3.3326 16 1 8.9195 2.3493 -1.9678 17 1 8.7360 0.1729 -0.9143 18 7 1.4615 -2.0704 -1.3062 19 6 1.8532 -2.8609 -0.1323 20 6 1.1189 -4.2034 -0.1515 21 6 1.4732 -4.9550 -1.4376 22 6 1.0997 -4.0900 -2.6445 23 6 1.8346 -2.7508 -2.5530 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8900 27 1 1.8933 -0.5139 0.8899 28 1 1.6050 1.9817 0.8415 29 1 3.1262 1.4437 0.0900 30 1 1.7519 1.9297 -0.9316 31 1 2.6021 1.0991 -2.5034 32 1 3.8450 2.2074 -1.8749 33 1 4.1064 1.3603 -3.4184 34 1 6.4268 2.9444 -2.9350 35 1 2.9289 -3.0350 -0.1541 36 1 1.5919 -2.3170 0.7755 37 1 0.0432 -4.0304 -0.1157 38 1 1.4209 -4.7965 0.7116 39 1 0.9188 -5.8928 -1.4760 40 1 2.5429 -5.1634 -1.4559 41 1 0.0238 -3.9151 -2.6479 42 1 1.3882 -4.6014 -3.5628 43 1 1.5598 -2.1268 -3.4035 44 1 2.9105 -2.9256 -2.5635 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000354764744.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:52:33 Heat of formation + Delta-G solvation = -19.054092 kcal Electronic energy + Delta-G solvation = -22845.548374 eV Core-core repulsion = 19798.425631 eV Total energy + Delta-G solvation = -3047.122744 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -39.94107 -37.41217 -35.26810 -34.76247 -31.92065 -31.54617 -30.29831 -27.37648 -26.43992 -25.92994 -24.13049 -22.82893 -22.46019 -20.19753 -19.43472 -18.18230 -16.99110 -16.42941 -15.70688 -14.88136 -14.64501 -14.35143 -13.97155 -13.92709 -13.55534 -13.12752 -13.01644 -12.73143 -12.55688 -12.11430 -11.97584 -11.88166 -11.66247 -11.48120 -11.28833 -11.01879 -10.95811 -10.77582 -10.50078 -10.46988 -10.42529 -10.34064 -10.18671 -10.09599 -9.82691 -9.56070 -9.04085 -8.94506 -7.87073 -7.16932 -6.24675 -3.81247 3.13378 3.22708 3.27855 3.84091 4.10331 4.42204 4.89198 5.09134 5.17528 5.22727 5.29194 5.43236 5.45285 5.62836 5.69354 5.82414 5.88688 5.93731 5.99738 6.03988 6.07733 6.12532 6.20886 6.27579 6.28183 6.32428 6.36077 6.45278 6.47489 6.53831 6.58626 6.64555 6.80015 6.88056 7.04362 7.08641 7.40462 7.54226 7.57306 7.67316 8.06127 8.48698 9.19300 9.45800 9.99255 10.67606 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.021638 B = 0.006666 C = 0.005708 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1293.709906 B = 4199.119478 C = 4904.251763 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.077 4.077 3 C -0.154 4.154 4 C 0.075 3.925 5 H 0.091 0.909 6 C 0.415 3.585 7 O -0.593 6.593 8 N -0.441 5.441 9 C 0.111 3.889 10 C -0.301 4.301 11 H 0.103 0.897 12 C 0.027 3.973 13 N -0.886 5.886 14 Si 0.928 3.072 15 H -0.278 1.278 16 H -0.283 1.283 17 H -0.270 1.270 18 N -0.509 5.509 19 C 0.020 3.980 20 C -0.113 4.113 21 C -0.119 4.119 22 C -0.110 4.110 23 C 0.049 3.951 24 H 0.049 0.951 25 H 0.065 0.935 26 H 0.043 0.957 27 H 0.069 0.931 28 H 0.048 0.952 29 H 0.068 0.932 30 H 0.058 0.942 31 H 0.027 0.973 32 H 0.074 0.926 33 H 0.063 0.937 34 H 0.265 0.735 35 H 0.100 0.900 36 H 0.063 0.937 37 H 0.057 0.943 38 H 0.057 0.943 39 H 0.053 0.947 40 H 0.059 0.941 41 H 0.064 0.936 42 H 0.058 0.942 43 H 0.064 0.936 44 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.125 -4.430 0.950 11.092 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.096 4.096 3 C -0.211 4.211 4 C -0.037 4.037 5 H 0.109 0.891 6 C 0.203 3.797 7 O -0.481 6.481 8 N -0.159 5.159 9 C -0.032 4.032 10 C -0.429 4.429 11 H 0.120 0.880 12 C -0.174 4.174 13 N -0.527 5.527 14 Si 0.755 3.245 15 H -0.204 1.204 16 H -0.209 1.209 17 H -0.195 1.195 18 N -0.232 5.232 19 C -0.107 4.107 20 C -0.151 4.151 21 C -0.156 4.156 22 C -0.148 4.148 23 C -0.079 4.079 24 H 0.068 0.932 25 H 0.084 0.916 26 H 0.062 0.938 27 H 0.088 0.912 28 H 0.067 0.933 29 H 0.087 0.913 30 H 0.077 0.923 31 H 0.045 0.955 32 H 0.092 0.908 33 H 0.082 0.918 34 H 0.076 0.924 35 H 0.117 0.883 36 H 0.081 0.919 37 H 0.076 0.924 38 H 0.075 0.925 39 H 0.072 0.928 40 H 0.078 0.922 41 H 0.083 0.917 42 H 0.077 0.923 43 H 0.082 0.918 44 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -10.293 -4.644 1.091 11.344 hybrid contribution 1.830 0.182 -0.235 1.854 sum -8.462 -4.462 0.856 9.605 Atomic orbital electron populations 1.21694 0.94689 1.02189 1.00378 1.20985 0.95926 0.95766 0.96945 1.22074 1.02548 0.95210 1.01312 1.21790 0.91250 0.90976 0.99681 0.89127 1.20965 0.89103 0.84796 0.84875 1.90297 1.74147 1.32219 1.51397 1.43893 1.06491 1.19168 1.46320 1.21993 0.92222 0.90536 0.98482 1.19804 0.81028 1.07936 1.34135 0.87968 1.25283 1.00631 0.94891 0.96644 1.70158 1.35227 1.06670 1.40656 0.85894 0.82308 0.77484 0.78837 1.20428 1.20910 1.19507 1.62452 1.56797 1.01532 1.02466 1.22722 1.02868 0.92602 0.92476 1.21576 1.00262 0.96432 0.96818 1.21537 1.01090 0.97654 0.95347 1.21508 1.00494 0.95233 0.97527 1.22061 0.98749 0.94793 0.92300 0.93201 0.91615 0.93829 0.91232 0.93252 0.91301 0.92341 0.95490 0.90784 0.91834 0.92389 0.88265 0.91878 0.92404 0.92460 0.92795 0.92231 0.91742 0.92290 0.91793 0.93733 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.85 8.99 37.16 0.33 -1.52 16 2 C -0.08 -1.30 2.00 -90.62 -0.18 -1.48 16 3 C -0.15 -2.60 7.50 37.16 0.28 -2.32 16 4 C 0.07 1.41 1.39 -68.86 -0.10 1.32 16 5 H 0.09 1.68 5.72 -51.93 -0.30 1.38 16 6 C 0.41 9.78 5.23 -10.98 -0.06 9.72 16 7 O -0.59 -15.62 12.14 5.55 0.07 -15.55 16 8 N -0.44 -11.07 2.50 -122.19 -0.30 -11.38 16 9 C 0.11 2.48 6.64 59.85 0.40 2.88 16 10 C -0.30 -8.30 9.57 -14.94 -0.14 -8.44 16 11 H 0.10 2.98 7.18 -52.49 -0.38 2.61 16 12 C 0.03 0.71 5.42 -17.47 -0.09 0.62 16 13 N -0.89 -23.00 9.51 55.50 0.53 -22.48 16 14 Si 0.93 20.83 29.56 -169.99 -5.02 15.81 16 15 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 16 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 17 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 18 N -0.51 -8.88 3.69 -228.07 -0.84 -9.72 16 19 C 0.02 0.36 4.56 -3.83 -0.02 0.34 16 20 C -0.11 -1.63 6.09 -26.65 -0.16 -1.80 16 21 C -0.12 -1.65 6.00 -26.61 -0.16 -1.81 16 22 C -0.11 -1.54 6.09 -26.65 -0.16 -1.70 16 23 C 0.05 0.84 5.09 -3.83 -0.02 0.82 16 24 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 25 H 0.06 0.94 7.43 -51.93 -0.39 0.55 16 26 H 0.04 0.54 8.14 -51.93 -0.42 0.12 16 27 H 0.07 1.27 6.54 -51.93 -0.34 0.93 16 28 H 0.05 0.73 8.14 -51.93 -0.42 0.30 16 29 H 0.07 1.40 6.35 -51.93 -0.33 1.07 16 30 H 0.06 0.94 6.56 -51.93 -0.34 0.60 16 31 H 0.03 0.52 4.08 -51.93 -0.21 0.31 16 32 H 0.07 1.74 6.54 -51.93 -0.34 1.40 16 33 H 0.06 1.53 7.05 -51.93 -0.37 1.16 16 34 H 0.27 6.57 8.31 -40.82 -0.34 6.24 16 35 H 0.10 2.14 4.97 -52.30 -0.26 1.88 16 36 H 0.06 1.11 6.13 -51.93 -0.32 0.79 16 37 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 38 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 39 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 40 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 41 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 42 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 43 H 0.06 1.05 8.08 -51.92 -0.42 0.63 16 44 H 0.04 0.91 6.98 -51.93 -0.36 0.55 16 LS Contribution 318.47 15.07 4.80 4.80 Total: -1.00 -28.18 318.47 -8.15 -36.33 By element: Atomic # 1 Polarization: 12.84 SS G_CDS: -7.29 Total: 5.55 kcal Atomic # 6 Polarization: -3.28 SS G_CDS: -0.08 Total: -3.36 kcal Atomic # 7 Polarization: -42.95 SS G_CDS: -0.62 Total: -43.57 kcal Atomic # 8 Polarization: -15.62 SS G_CDS: 0.07 Total: -15.55 kcal Atomic # 14 Polarization: 20.83 SS G_CDS: -5.02 Total: 15.81 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -28.18 -8.15 -36.33 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000354764744.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.271 kcal (2) G-P(sol) polarization free energy of solvation -28.179 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.908 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.147 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.325 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.054 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds