Wall clock time and date at job start Mon Mar 30 2020 00:52:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47166 * 2 1 4 4 C 1.53000 * 109.46808 * 240.00094 * 2 1 3 5 5 H 1.08996 * 109.47343 * 64.61191 * 4 2 1 6 6 C 1.50703 * 109.46823 * 184.61149 * 4 2 1 7 7 O 1.21285 * 120.00589 * 91.04697 * 6 4 2 8 8 N 1.34784 * 119.99752 * 271.04672 * 6 4 2 9 9 C 1.46501 * 119.99994 * 354.45259 * 8 6 4 10 10 C 1.37096 * 120.00090 * 174.45437 * 8 6 4 11 11 H 1.08001 * 119.99999 * 0.26275 * 10 8 6 12 12 C 1.38943 * 120.00156 * 180.27198 * 10 8 6 13 13 N 1.31415 * 119.99968 * 8.15455 * 12 10 8 14 14 Si 1.86802 * 120.00072 * 188.15925 * 12 10 8 15 15 H 1.48497 * 109.47216 * 89.99583 * 14 12 10 16 16 H 1.48503 * 109.47001 * 209.99714 * 14 12 10 17 17 H 1.48498 * 109.47099 * 329.99275 * 14 12 10 18 18 N 1.46897 * 109.47343 * 304.60671 * 4 2 1 19 19 C 1.46852 * 111.00186 * 299.21365 * 18 4 2 20 20 C 1.53033 * 109.52536 * 174.16184 * 19 18 4 21 21 C 1.53117 * 109.27973 * 59.17657 * 20 19 18 22 22 C 1.53118 * 109.16327 * 302.34613 * 21 20 19 23 23 C 1.46853 * 111.00349 * 175.00498 * 18 4 2 24 24 H 1.09000 * 109.47380 * 60.00438 * 1 2 3 25 25 H 1.09005 * 109.47306 * 179.97438 * 1 2 3 26 26 H 1.08999 * 109.47444 * 299.99813 * 1 2 3 27 27 H 1.08996 * 109.47054 * 120.00238 * 2 1 3 28 28 H 1.09003 * 109.47110 * 54.97206 * 3 2 1 29 29 H 1.08995 * 109.46984 * 174.97414 * 3 2 1 30 30 H 1.09003 * 109.47005 * 294.97915 * 3 2 1 31 31 H 1.09002 * 109.46935 * 355.86813 * 9 8 6 32 32 H 1.08999 * 109.46981 * 115.86475 * 9 8 6 33 33 H 1.08995 * 109.47099 * 235.86663 * 9 8 6 34 34 H 0.97000 * 120.00093 * 180.02562 * 13 12 10 35 35 H 1.08998 * 109.46113 * 294.17654 * 19 18 4 36 36 H 1.08998 * 109.46247 * 54.14062 * 19 18 4 37 37 H 1.09004 * 109.50342 * 299.23478 * 20 19 18 38 38 H 1.08998 * 109.53813 * 179.14004 * 20 19 18 39 39 H 1.09003 * 109.52452 * 182.44056 * 21 20 19 40 40 H 1.08999 * 109.57423 * 62.28347 * 21 20 19 41 41 H 1.08999 * 109.50445 * 297.71738 * 22 21 20 42 42 H 1.08996 * 109.53550 * 177.61403 * 22 21 20 43 43 H 1.09008 * 109.45706 * 305.85804 * 23 18 4 44 44 H 1.09004 * 109.46257 * 65.82971 * 23 18 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 -1.2493 5 1 1.7456 -0.1619 -2.1373 6 6 3.5426 -0.8209 -1.1935 7 8 4.0678 -1.7908 -0.6889 8 7 4.3030 0.1678 -1.7044 9 6 3.6739 1.2798 -2.4212 10 6 5.6652 0.1327 -1.5533 11 1 6.1293 -0.6892 -1.0285 12 6 6.4485 1.1548 -2.0750 13 7 5.8799 2.2310 -2.5704 14 14 8.3101 0.9991 -2.0723 15 1 8.7545 0.3516 -3.3326 16 1 8.9195 2.3493 -1.9678 17 1 8.7360 0.1729 -0.9143 18 7 1.4615 -2.0704 -1.3062 19 6 1.8532 -2.8609 -0.1323 20 6 1.1189 -4.2034 -0.1515 21 6 1.4732 -4.9550 -1.4376 22 6 1.0997 -4.0900 -2.6445 23 6 1.8346 -2.7508 -2.5530 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8900 27 1 1.8933 -0.5139 0.8899 28 1 1.6050 1.9817 0.8415 29 1 3.1262 1.4437 0.0900 30 1 1.7519 1.9297 -0.9316 31 1 2.6021 1.0991 -2.5034 32 1 3.8450 2.2074 -1.8749 33 1 4.1064 1.3603 -3.4184 34 1 6.4268 2.9444 -2.9350 35 1 2.9289 -3.0350 -0.1541 36 1 1.5919 -2.3170 0.7755 37 1 0.0432 -4.0304 -0.1157 38 1 1.4209 -4.7965 0.7116 39 1 0.9188 -5.8928 -1.4760 40 1 2.5429 -5.1634 -1.4559 41 1 0.0238 -3.9151 -2.6479 42 1 1.3882 -4.6014 -3.5628 43 1 1.5598 -2.1268 -3.4035 44 1 2.9105 -2.9256 -2.5635 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000354764744.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:52:32 Heat of formation + Delta-G solvation = -35.507215 kcal Electronic energy + Delta-G solvation = -22846.261835 eV Core-core repulsion = 19798.425631 eV Total energy + Delta-G solvation = -3047.836205 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.58213 -38.99653 -36.74984 -36.65682 -33.58364 -33.20047 -31.60631 -29.03574 -27.93960 -27.52150 -25.96588 -24.13071 -23.86642 -21.77573 -20.73099 -19.82459 -18.99177 -18.20729 -17.15268 -16.64021 -16.36242 -15.94635 -15.61759 -15.23283 -14.91401 -14.78447 -14.38186 -14.23794 -13.95136 -13.74502 -13.59390 -13.42532 -13.00691 -12.92311 -12.86301 -12.76827 -12.60261 -12.34641 -12.18031 -12.08911 -11.80019 -11.74050 -11.57109 -11.50347 -11.14908 -11.02575 -10.93104 -10.67497 -9.86705 -8.87014 -8.23613 -5.90529 1.31614 1.35966 1.47529 1.99611 2.22825 2.98220 3.09430 3.11068 3.83001 3.94948 3.98310 4.05772 4.11845 4.15823 4.38418 4.42077 4.51439 4.59785 4.64949 4.70542 4.77966 4.86987 4.90273 4.97766 5.03321 5.06954 5.11849 5.16012 5.18898 5.22978 5.29043 5.32225 5.34938 5.41669 5.44193 5.52795 5.61153 5.65605 5.97542 6.13906 6.21469 6.48841 7.17700 7.51453 8.06292 8.64468 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.021638 B = 0.006666 C = 0.005708 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1293.709906 B = 4199.119478 C = 4904.251763 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.073 4.073 3 C -0.148 4.148 4 C 0.082 3.918 5 H 0.100 0.900 6 C 0.411 3.589 7 O -0.628 6.628 8 N -0.457 5.457 9 C 0.127 3.873 10 C -0.340 4.340 11 H 0.071 0.929 12 C -0.002 4.002 13 N -0.894 5.894 14 Si 0.987 3.013 15 H -0.273 1.273 16 H -0.268 1.268 17 H -0.278 1.278 18 N -0.492 5.492 19 C 0.023 3.977 20 C -0.107 4.107 21 C -0.119 4.119 22 C -0.103 4.103 23 C 0.046 3.954 24 H 0.061 0.939 25 H 0.065 0.935 26 H 0.063 0.937 27 H 0.050 0.950 28 H 0.073 0.927 29 H 0.026 0.974 30 H 0.068 0.932 31 H 0.060 0.940 32 H 0.061 0.939 33 H 0.043 0.957 34 H 0.271 0.729 35 H 0.055 0.945 36 H 0.062 0.938 37 H 0.077 0.923 38 H 0.067 0.933 39 H 0.084 0.916 40 H 0.035 0.965 41 H 0.084 0.916 42 H 0.074 0.926 43 H 0.073 0.927 44 H 0.000 1.000 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.448 -4.422 0.597 13.223 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.093 4.093 3 C -0.205 4.205 4 C -0.030 4.030 5 H 0.118 0.882 6 C 0.200 3.800 7 O -0.517 6.517 8 N -0.175 5.175 9 C -0.015 4.015 10 C -0.469 4.469 11 H 0.089 0.911 12 C -0.203 4.203 13 N -0.534 5.534 14 Si 0.811 3.189 15 H -0.198 1.198 16 H -0.192 1.192 17 H -0.203 1.203 18 N -0.214 5.214 19 C -0.104 4.104 20 C -0.144 4.144 21 C -0.156 4.156 22 C -0.140 4.140 23 C -0.082 4.082 24 H 0.080 0.920 25 H 0.084 0.916 26 H 0.082 0.918 27 H 0.069 0.931 28 H 0.092 0.908 29 H 0.045 0.955 30 H 0.087 0.913 31 H 0.078 0.922 32 H 0.080 0.920 33 H 0.062 0.938 34 H 0.082 0.918 35 H 0.073 0.927 36 H 0.080 0.920 37 H 0.096 0.904 38 H 0.085 0.915 39 H 0.103 0.897 40 H 0.054 0.946 41 H 0.103 0.897 42 H 0.092 0.908 43 H 0.091 0.909 44 H 0.018 0.982 Dipole moment (debyes) X Y Z Total from point charges -12.638 -4.622 0.728 13.476 hybrid contribution 2.563 0.154 -0.096 2.570 sum -10.075 -4.468 0.632 11.039 Atomic orbital electron populations 1.21606 0.91479 1.02727 1.02004 1.20986 0.98351 0.95073 0.94845 1.22004 0.99872 0.95687 1.02965 1.21870 0.87503 0.92515 1.01140 0.88247 1.22002 0.91228 0.83609 0.83177 1.90316 1.75582 1.33433 1.52348 1.44104 1.06013 1.20283 1.47133 1.21814 0.93721 0.89338 0.96652 1.19676 0.82837 1.08152 1.36187 0.91099 1.25956 1.04387 0.94260 0.95742 1.70239 1.36513 1.06648 1.39963 0.85034 0.77467 0.77922 0.78509 1.19831 1.19224 1.20307 1.62587 1.55311 1.00895 1.02632 1.22601 1.00656 0.94627 0.92538 1.21547 1.00805 0.94379 0.97700 1.21556 1.00123 0.98966 0.94989 1.21498 1.01044 0.93163 0.98307 1.22163 0.96596 0.97056 0.92401 0.91960 0.91605 0.91820 0.93133 0.90773 0.95451 0.91295 0.92168 0.92012 0.93811 0.91834 0.92703 0.91976 0.90414 0.91454 0.89713 0.94580 0.89728 0.90789 0.90896 0.98170 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.99 8.99 71.98 0.65 -2.34 16 2 C -0.07 -2.39 2.00 -10.79 -0.02 -2.42 16 3 C -0.15 -4.85 7.50 71.98 0.54 -4.31 16 4 C 0.08 3.07 1.39 44.17 0.06 3.13 16 5 H 0.10 3.54 5.72 -2.39 -0.01 3.53 16 6 C 0.41 20.22 5.23 87.66 0.46 20.68 16 7 O -0.63 -35.27 12.14 -3.04 -0.04 -35.31 16 8 N -0.46 -23.94 2.50 -658.89 -1.64 -25.59 16 9 C 0.13 5.80 6.64 127.77 0.85 6.65 16 10 C -0.34 -19.75 9.57 84.04 0.80 -18.94 16 11 H 0.07 4.45 7.18 -2.91 -0.02 4.43 16 12 C 0.00 -0.13 5.42 84.92 0.46 0.33 16 13 N -0.89 -46.90 9.51 21.66 0.21 -46.70 16 14 Si 0.99 43.47 29.56 68.60 2.03 45.50 16 15 H -0.27 -11.74 7.11 99.48 0.71 -11.04 16 16 H -0.27 -11.06 7.11 99.48 0.71 -10.35 16 17 H -0.28 -12.50 7.11 99.48 0.71 -11.79 16 18 N -0.49 -16.77 3.69 -875.49 -3.23 -20.00 16 19 C 0.02 0.82 4.56 86.32 0.39 1.22 16 20 C -0.11 -2.88 6.09 30.64 0.19 -2.70 16 21 C -0.12 -3.08 6.00 30.67 0.18 -2.89 16 22 C -0.10 -2.64 6.09 30.65 0.19 -2.45 16 23 C 0.05 1.56 5.09 86.32 0.44 2.00 16 24 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16 25 H 0.06 1.65 7.43 -2.38 -0.02 1.63 16 26 H 0.06 1.35 8.14 -2.39 -0.02 1.33 16 27 H 0.05 1.85 6.54 -2.39 -0.02 1.84 16 28 H 0.07 2.04 8.14 -2.39 -0.02 2.02 16 29 H 0.03 1.11 6.35 -2.39 -0.02 1.10 16 30 H 0.07 2.09 6.56 -2.39 -0.02 2.07 16 31 H 0.06 2.28 4.08 -2.39 -0.01 2.27 16 32 H 0.06 2.94 6.54 -2.39 -0.02 2.92 16 33 H 0.04 2.13 7.05 -2.39 -0.02 2.12 16 34 H 0.27 13.36 8.31 -92.71 -0.77 12.59 16 35 H 0.06 2.50 4.97 -8.25 -0.04 2.46 16 36 H 0.06 2.18 6.13 -2.39 -0.01 2.16 16 37 H 0.08 1.84 8.14 -2.38 -0.02 1.82 16 38 H 0.07 1.69 8.14 -2.39 -0.02 1.67 16 39 H 0.08 1.71 8.14 -2.39 -0.02 1.70 16 40 H 0.04 1.09 8.14 -2.39 -0.02 1.07 16 41 H 0.08 1.90 8.14 -2.39 -0.02 1.88 16 42 H 0.07 1.70 8.14 -2.39 -0.02 1.68 16 43 H 0.07 2.30 8.08 -2.38 -0.02 2.29 16 44 H 0.00 0.00 6.98 -2.39 -0.02 -0.02 16 Total: -1.00 -64.83 318.47 3.46 -61.37 By element: Atomic # 1 Polarization: 21.82 SS G_CDS: 0.94 Total: 22.76 kcal Atomic # 6 Polarization: -7.23 SS G_CDS: 5.19 Total: -2.04 kcal Atomic # 7 Polarization: -87.62 SS G_CDS: -4.66 Total: -92.28 kcal Atomic # 8 Polarization: -35.27 SS G_CDS: -0.04 Total: -35.31 kcal Atomic # 14 Polarization: 43.47 SS G_CDS: 2.03 Total: 45.50 kcal Total: -64.83 3.46 -61.37 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000354764744.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.863 kcal (2) G-P(sol) polarization free energy of solvation -64.827 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.964 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.457 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.370 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.507 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds