Wall clock time and date at job start Mon Mar 30 2020 00:54:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53001 * 109.47252 * 2 1 4 4 C 1.52997 * 109.47252 * 179.97438 * 3 2 1 5 5 N 1.46905 * 109.47218 * 180.02562 * 4 3 2 6 6 C 1.46847 * 110.99965 * 67.90272 * 5 4 3 7 7 C 1.53033 * 109.52701 * 185.84110 * 6 5 4 8 8 C 1.53121 * 109.27675 * 300.82293 * 7 6 5 9 9 C 1.53121 * 109.16332 * 57.64679 * 8 7 6 10 10 C 1.46849 * 110.99976 * 192.11018 * 5 4 3 11 11 H 1.09002 * 109.46186 * 294.17695 * 10 5 4 12 12 C 1.52994 * 109.45880 * 54.14570 * 10 5 4 13 13 N 1.46498 * 109.47454 * 54.05345 * 12 10 5 14 14 C 1.34778 * 119.99926 * 184.85786 * 13 12 10 15 15 O 1.21683 * 120.00413 * 359.97438 * 14 13 12 16 16 C 1.46378 * 119.99526 * 179.97438 * 14 13 12 17 17 H 1.07994 * 120.00244 * 359.97438 * 16 14 13 18 18 C 1.40052 * 119.99637 * 179.97438 * 16 14 13 19 19 N 1.30672 * 120.00277 * 359.97438 * 18 16 14 20 20 Si 1.86797 * 120.00027 * 180.02562 * 18 16 14 21 21 H 1.48503 * 109.46988 * 359.97438 * 20 18 16 22 22 H 1.48496 * 109.47489 * 119.99836 * 20 18 16 23 23 H 1.48504 * 109.47364 * 239.99843 * 20 18 16 24 24 H 1.09004 * 109.47019 * 59.99556 * 1 2 3 25 25 H 1.09000 * 109.47012 * 300.00036 * 1 2 3 26 26 H 1.08999 * 109.47287 * 179.97438 * 1 2 3 27 27 H 1.08993 * 109.47378 * 120.00164 * 2 1 3 28 28 H 1.09003 * 109.47107 * 240.00730 * 2 1 3 29 29 H 1.08994 * 109.47782 * 300.00557 * 3 2 1 30 30 H 1.09002 * 109.46956 * 60.00548 * 3 2 1 31 31 H 1.09003 * 109.47470 * 300.00169 * 4 3 2 32 32 H 1.09000 * 109.47426 * 60.00307 * 4 3 2 33 33 H 1.09002 * 109.46337 * 305.85730 * 6 5 4 34 34 H 1.08998 * 109.46315 * 65.83529 * 6 5 4 35 35 H 1.09002 * 109.50097 * 60.75418 * 7 6 5 36 36 H 1.08996 * 109.51010 * 180.84054 * 7 6 5 37 37 H 1.09002 * 109.52705 * 177.55686 * 8 7 6 38 38 H 1.09005 * 109.52074 * 297.68404 * 8 7 6 39 39 H 1.08999 * 109.49890 * 62.29284 * 9 8 7 40 40 H 1.08999 * 109.50212 * 182.36471 * 9 8 7 41 41 H 1.09004 * 109.47229 * 174.04962 * 12 10 5 42 42 H 1.08996 * 109.47261 * 294.04598 * 12 10 5 43 43 H 0.97000 * 119.99846 * 4.84758 * 13 12 10 44 44 H 0.97002 * 120.00029 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 7 4.0597 2.8275 0.0013 6 6 3.7483 3.4952 1.2716 7 6 4.1408 4.9717 1.1830 8 6 5.6382 5.0796 0.8818 9 6 5.9438 4.3350 -0.4209 10 6 5.4990 2.8769 -0.2857 11 1 6.0481 2.4037 0.5283 12 6 5.7840 2.1338 -1.5924 13 7 4.9388 2.6780 -2.6581 14 6 4.9468 2.1105 -3.8805 15 8 5.6563 1.1464 -4.0992 16 6 4.1019 2.6540 -4.9451 17 1 3.4719 3.5094 -4.7510 18 6 4.1105 2.0647 -6.2156 19 7 4.8732 1.0300 -6.4507 20 14 3.0329 2.7586 -7.5744 21 1 2.2706 3.9227 -7.0558 22 1 3.8858 3.1912 -8.7105 23 1 2.0851 1.7132 -8.0372 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 -1.0276 -0.0005 27 1 1.8933 -0.5138 0.8899 28 1 1.8933 -0.5137 -0.8901 29 1 1.6767 1.9564 -0.8898 30 1 1.6767 1.9563 0.8901 31 1 3.9330 0.9288 0.8908 32 1 3.9337 0.9286 -0.8891 33 1 2.6799 3.4148 1.4718 34 1 4.3058 3.0192 2.0782 35 1 3.5737 5.4517 0.3854 36 1 3.9234 5.4636 2.1310 37 1 5.9137 6.1288 0.7748 38 1 6.2070 4.6350 1.6985 39 1 5.4051 4.8050 -1.2436 40 1 7.0150 4.3725 -0.6188 41 1 6.8330 2.2597 -1.8606 42 1 5.5670 1.0736 -1.4622 43 1 4.3734 3.4467 -2.4838 44 1 4.8789 0.6216 -7.3306 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000355995545.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:54:53 Heat of formation + Delta-G solvation = -61.310427 kcal Electronic energy + Delta-G solvation = -21664.522634 eV Core-core repulsion = 18615.567519 eV Total energy + Delta-G solvation = -3048.955116 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -39.47483 -36.88320 -35.45865 -33.61279 -32.73454 -32.24303 -30.33029 -28.45802 -26.77558 -25.08666 -24.29827 -22.28681 -21.06529 -20.57566 -20.01613 -18.81692 -17.13505 -15.82194 -15.52580 -15.26304 -14.94513 -14.48091 -14.22464 -14.01439 -13.77211 -13.46734 -13.26919 -13.01468 -12.67888 -12.56303 -12.20958 -12.08183 -11.56394 -11.37811 -11.19201 -11.14950 -10.99636 -10.93482 -10.85247 -10.74320 -10.61114 -10.42917 -10.33408 -10.10245 -10.00547 -9.82551 -8.77376 -8.07091 -7.49182 -7.28712 -6.09283 -4.52679 3.17969 3.26202 3.30913 3.98347 4.19082 4.69290 4.86884 4.89176 4.96281 5.06497 5.12051 5.14324 5.27325 5.37336 5.45588 5.48393 5.52930 5.67806 5.70677 5.78444 5.82646 5.86425 5.91625 5.95407 5.98386 6.03497 6.05385 6.17265 6.21953 6.25041 6.28030 6.43383 6.50281 6.53467 6.59802 6.61779 7.35318 7.37088 7.52950 8.11391 8.29113 8.47555 9.12832 9.73212 10.70939 10.91840 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.013963 B = 0.006028 C = 0.004869 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2004.879726 B = 4643.845965 C = 5749.343510 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.125 4.125 3 C -0.111 4.111 4 C 0.051 3.949 5 N -0.524 5.524 6 C 0.055 3.945 7 C -0.116 4.116 8 C -0.120 4.120 9 C -0.111 4.111 10 C 0.077 3.923 11 H 0.040 0.960 12 C 0.138 3.862 13 N -0.752 5.752 14 C 0.555 3.445 15 O -0.587 6.587 16 C -0.542 4.542 17 H 0.066 0.934 18 C 0.088 3.912 19 N -0.771 5.771 20 Si 0.904 3.096 21 H -0.264 1.264 22 H -0.277 1.277 23 H -0.277 1.277 24 H 0.056 0.944 25 H 0.049 0.951 26 H 0.050 0.950 27 H 0.054 0.946 28 H 0.066 0.934 29 H 0.074 0.926 30 H 0.054 0.946 31 H 0.023 0.977 32 H 0.090 0.910 33 H 0.074 0.926 34 H 0.025 0.975 35 H 0.072 0.928 36 H 0.060 0.940 37 H 0.061 0.939 38 H 0.054 0.946 39 H 0.077 0.923 40 H 0.065 0.935 41 H 0.047 0.953 42 H 0.049 0.951 43 H 0.387 0.613 44 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.372 4.833 15.620 16.925 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.163 4.163 3 C -0.149 4.149 4 C -0.076 4.076 5 N -0.249 5.249 6 C -0.073 4.073 7 C -0.154 4.154 8 C -0.157 4.157 9 C -0.149 4.149 10 C -0.031 4.031 11 H 0.058 0.942 12 C 0.012 3.988 13 N -0.408 5.408 14 C 0.359 3.641 15 O -0.471 6.471 16 C -0.580 4.580 17 H 0.085 0.915 18 C -0.131 4.131 19 N -0.400 5.400 20 Si 0.728 3.272 21 H -0.188 1.188 22 H -0.203 1.203 23 H -0.203 1.203 24 H 0.075 0.925 25 H 0.068 0.932 26 H 0.069 0.931 27 H 0.073 0.927 28 H 0.084 0.916 29 H 0.093 0.907 30 H 0.073 0.927 31 H 0.041 0.959 32 H 0.108 0.892 33 H 0.092 0.908 34 H 0.043 0.957 35 H 0.091 0.909 36 H 0.079 0.921 37 H 0.079 0.921 38 H 0.073 0.927 39 H 0.095 0.905 40 H 0.084 0.916 41 H 0.065 0.935 42 H 0.067 0.933 43 H 0.220 0.780 44 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -4.004 4.230 14.965 16.059 hybrid contribution -0.338 0.211 0.122 0.417 sum -4.343 4.441 15.087 16.316 Atomic orbital electron populations 1.21740 0.96013 1.01246 1.01659 1.21486 0.95720 0.97128 1.01941 1.21564 0.94722 0.96314 1.02306 1.22229 0.95476 0.88709 1.01199 1.61801 1.14719 1.16458 1.31957 1.22107 1.00599 0.94518 0.90078 1.21579 0.96469 0.95920 1.01441 1.21584 0.96190 1.00200 0.97768 1.21608 1.00913 0.94410 0.97928 1.21897 0.87751 0.96475 0.97012 0.94168 1.20922 0.95028 0.96614 0.86193 1.45926 1.47875 1.36274 1.10763 1.18195 0.82614 0.82830 0.80493 1.90586 1.45347 1.29434 1.81712 1.20916 1.26154 1.16104 0.94795 0.91538 1.25689 0.94503 0.93834 0.99070 1.70043 1.31484 1.17108 1.21372 0.86386 0.80241 0.79570 0.80955 1.18803 1.20284 1.20283 0.92492 0.93195 0.93075 0.92675 0.91565 0.90733 0.92733 0.95850 0.89156 0.90786 0.95667 0.90950 0.92149 0.92052 0.92735 0.90459 0.91614 0.93484 0.93269 0.78035 0.92382 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.65 9.91 37.16 0.37 -1.28 16 2 C -0.12 -1.55 5.93 -26.73 -0.16 -1.71 16 3 C -0.11 -1.48 5.19 -26.73 -0.14 -1.62 16 4 C 0.05 0.75 4.71 -3.82 -0.02 0.74 16 5 N -0.52 -7.49 3.94 -226.69 -0.89 -8.39 16 6 C 0.05 0.65 5.30 -3.84 -0.02 0.63 16 7 C -0.12 -1.25 6.09 -26.65 -0.16 -1.41 16 8 C -0.12 -1.32 6.00 -26.61 -0.16 -1.47 16 9 C -0.11 -1.49 5.26 -26.65 -0.14 -1.63 16 10 C 0.08 1.15 2.10 -67.73 -0.14 1.01 16 11 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 12 C 0.14 2.69 4.56 -4.05 -0.02 2.67 16 13 N -0.75 -16.97 5.11 -61.73 -0.32 -17.28 16 14 C 0.56 15.96 7.75 -12.99 -0.10 15.86 16 15 O -0.59 -19.27 15.02 5.20 0.08 -19.19 16 16 C -0.54 -15.58 9.54 -35.63 -0.34 -15.92 16 17 H 0.07 1.78 7.85 -52.49 -0.41 1.36 16 18 C 0.09 2.50 5.50 -17.37 -0.10 2.41 16 19 N -0.77 -23.53 11.83 55.55 0.66 -22.87 16 20 Si 0.90 20.55 29.56 -169.99 -5.02 15.53 16 21 H -0.26 -5.81 7.11 56.52 0.40 -5.40 16 22 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 23 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 24 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 25 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 26 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16 27 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 28 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 29 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 30 H 0.05 0.65 6.50 -51.93 -0.34 0.31 16 31 H 0.02 0.32 8.10 -51.93 -0.42 -0.10 16 32 H 0.09 1.62 5.67 -51.93 -0.29 1.33 16 33 H 0.07 0.83 6.30 -51.93 -0.33 0.50 16 34 H 0.03 0.29 8.14 -51.93 -0.42 -0.13 16 35 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16 36 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 37 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 38 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 39 H 0.08 1.15 7.13 -51.93 -0.37 0.78 16 40 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 41 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 42 H 0.05 1.03 6.42 -51.93 -0.33 0.70 16 43 H 0.39 8.10 7.27 -40.82 -0.30 7.81 16 44 H 0.27 7.35 8.29 -40.82 -0.34 7.01 16 LS Contribution 342.16 15.07 5.16 5.16 Total: -1.00 -33.03 342.16 -9.31 -42.35 By element: Atomic # 1 Polarization: 14.28 SS G_CDS: -7.85 Total: 6.44 kcal Atomic # 6 Polarization: -0.60 SS G_CDS: -1.13 Total: -1.73 kcal Atomic # 7 Polarization: -47.99 SS G_CDS: -0.55 Total: -48.54 kcal Atomic # 8 Polarization: -19.27 SS G_CDS: 0.08 Total: -19.19 kcal Atomic # 14 Polarization: 20.55 SS G_CDS: -5.02 Total: 15.53 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -33.03 -9.31 -42.35 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000355995545.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.964 kcal (2) G-P(sol) polarization free energy of solvation -33.032 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.996 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.314 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.346 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.310 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds