Wall clock time and date at job start Mon Mar 30 2020 00:54:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53001 * 109.47252 * 2 1 4 4 C 1.52997 * 109.47252 * 179.97438 * 3 2 1 5 5 N 1.46905 * 109.47218 * 180.02562 * 4 3 2 6 6 C 1.46847 * 110.99965 * 67.90272 * 5 4 3 7 7 C 1.53033 * 109.52701 * 185.84110 * 6 5 4 8 8 C 1.53121 * 109.27675 * 300.82293 * 7 6 5 9 9 C 1.53121 * 109.16332 * 57.64679 * 8 7 6 10 10 C 1.46849 * 110.99976 * 192.11018 * 5 4 3 11 11 H 1.09002 * 109.46186 * 294.17695 * 10 5 4 12 12 C 1.52994 * 109.45880 * 54.14570 * 10 5 4 13 13 N 1.46498 * 109.47454 * 54.05345 * 12 10 5 14 14 C 1.34778 * 119.99926 * 184.85786 * 13 12 10 15 15 O 1.21683 * 120.00413 * 359.97438 * 14 13 12 16 16 C 1.46378 * 119.99526 * 179.97438 * 14 13 12 17 17 H 1.07994 * 120.00244 * 359.97438 * 16 14 13 18 18 C 1.40052 * 119.99637 * 179.97438 * 16 14 13 19 19 N 1.30672 * 120.00277 * 359.97438 * 18 16 14 20 20 Si 1.86797 * 120.00027 * 180.02562 * 18 16 14 21 21 H 1.48503 * 109.46988 * 359.97438 * 20 18 16 22 22 H 1.48496 * 109.47489 * 119.99836 * 20 18 16 23 23 H 1.48504 * 109.47364 * 239.99843 * 20 18 16 24 24 H 1.09004 * 109.47019 * 59.99556 * 1 2 3 25 25 H 1.09000 * 109.47012 * 300.00036 * 1 2 3 26 26 H 1.08999 * 109.47287 * 179.97438 * 1 2 3 27 27 H 1.08993 * 109.47378 * 120.00164 * 2 1 3 28 28 H 1.09003 * 109.47107 * 240.00730 * 2 1 3 29 29 H 1.08994 * 109.47782 * 300.00557 * 3 2 1 30 30 H 1.09002 * 109.46956 * 60.00548 * 3 2 1 31 31 H 1.09003 * 109.47470 * 300.00169 * 4 3 2 32 32 H 1.09000 * 109.47426 * 60.00307 * 4 3 2 33 33 H 1.09002 * 109.46337 * 305.85730 * 6 5 4 34 34 H 1.08998 * 109.46315 * 65.83529 * 6 5 4 35 35 H 1.09002 * 109.50097 * 60.75418 * 7 6 5 36 36 H 1.08996 * 109.51010 * 180.84054 * 7 6 5 37 37 H 1.09002 * 109.52705 * 177.55686 * 8 7 6 38 38 H 1.09005 * 109.52074 * 297.68404 * 8 7 6 39 39 H 1.08999 * 109.49890 * 62.29284 * 9 8 7 40 40 H 1.08999 * 109.50212 * 182.36471 * 9 8 7 41 41 H 1.09004 * 109.47229 * 174.04962 * 12 10 5 42 42 H 1.08996 * 109.47261 * 294.04598 * 12 10 5 43 43 H 0.97000 * 119.99846 * 4.84758 * 13 12 10 44 44 H 0.97002 * 120.00029 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 7 4.0597 2.8275 0.0013 6 6 3.7483 3.4952 1.2716 7 6 4.1408 4.9717 1.1830 8 6 5.6382 5.0796 0.8818 9 6 5.9438 4.3350 -0.4209 10 6 5.4990 2.8769 -0.2857 11 1 6.0481 2.4037 0.5283 12 6 5.7840 2.1338 -1.5924 13 7 4.9388 2.6780 -2.6581 14 6 4.9468 2.1105 -3.8805 15 8 5.6563 1.1464 -4.0992 16 6 4.1019 2.6540 -4.9451 17 1 3.4719 3.5094 -4.7510 18 6 4.1105 2.0647 -6.2156 19 7 4.8732 1.0300 -6.4507 20 14 3.0329 2.7586 -7.5744 21 1 2.2706 3.9227 -7.0558 22 1 3.8858 3.1912 -8.7105 23 1 2.0851 1.7132 -8.0372 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 -1.0276 -0.0005 27 1 1.8933 -0.5138 0.8899 28 1 1.8933 -0.5137 -0.8901 29 1 1.6767 1.9564 -0.8898 30 1 1.6767 1.9563 0.8901 31 1 3.9330 0.9288 0.8908 32 1 3.9337 0.9286 -0.8891 33 1 2.6799 3.4148 1.4718 34 1 4.3058 3.0192 2.0782 35 1 3.5737 5.4517 0.3854 36 1 3.9234 5.4636 2.1310 37 1 5.9137 6.1288 0.7748 38 1 6.2070 4.6350 1.6985 39 1 5.4051 4.8050 -1.2436 40 1 7.0150 4.3725 -0.6188 41 1 6.8330 2.2597 -1.8606 42 1 5.5670 1.0736 -1.4622 43 1 4.3734 3.4467 -2.4838 44 1 4.8789 0.6216 -7.3306 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000355995545.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:54:52 Heat of formation + Delta-G solvation = -83.763784 kcal Electronic energy + Delta-G solvation = -21665.496285 eV Core-core repulsion = 18615.567519 eV Total energy + Delta-G solvation = -3049.928766 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.72024 -38.94448 -36.52040 -35.31524 -34.44444 -33.78724 -31.86249 -29.49865 -28.70092 -26.72761 -25.36908 -23.37019 -22.36813 -21.79436 -21.60639 -20.19203 -19.18841 -17.44144 -17.05176 -16.66125 -16.16522 -15.96403 -15.85725 -15.21191 -15.04614 -14.86659 -14.44202 -14.26156 -14.24178 -13.94830 -13.64885 -13.13400 -13.09530 -13.04255 -12.75803 -12.71066 -12.55581 -12.20357 -12.11524 -12.00449 -11.94754 -11.80837 -11.58405 -11.46663 -11.03294 -11.02162 -10.91745 -9.81963 -9.33927 -9.18587 -8.25802 -6.80358 1.39986 1.40224 1.58069 2.26400 2.51313 2.83464 3.33650 3.66707 3.73925 3.87376 3.95052 4.05843 4.11277 4.26545 4.30468 4.35771 4.41516 4.43053 4.62825 4.65959 4.69484 4.79236 4.82157 4.86882 4.93943 4.95912 5.02807 5.07084 5.13092 5.17295 5.27112 5.29426 5.35037 5.35387 5.42761 5.47007 5.55004 5.94415 6.14584 6.28432 6.31879 6.41474 6.90858 7.66958 8.55638 8.73032 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.013963 B = 0.006028 C = 0.004869 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2004.879726 B = 4643.845965 C = 5749.343510 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.124 4.124 3 C -0.102 4.102 4 C 0.056 3.944 5 N -0.536 5.536 6 C 0.055 3.945 7 C -0.113 4.113 8 C -0.113 4.113 9 C -0.109 4.109 10 C 0.089 3.911 11 H 0.055 0.945 12 C 0.140 3.860 13 N -0.733 5.733 14 C 0.539 3.461 15 O -0.639 6.639 16 C -0.570 4.570 17 H 0.082 0.918 18 C 0.029 3.971 19 N -0.824 5.824 20 Si 0.995 3.005 21 H -0.248 1.248 22 H -0.268 1.268 23 H -0.269 1.269 24 H 0.046 0.954 25 H 0.067 0.933 26 H 0.059 0.941 27 H 0.069 0.931 28 H 0.038 0.962 29 H 0.050 0.950 30 H 0.078 0.922 31 H 0.036 0.964 32 H 0.048 0.952 33 H 0.084 0.916 34 H 0.035 0.965 35 H 0.062 0.938 36 H 0.086 0.914 37 H 0.075 0.925 38 H 0.066 0.934 39 H 0.059 0.941 40 H 0.066 0.934 41 H 0.034 0.966 42 H 0.028 0.972 43 H 0.396 0.604 44 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.979 6.821 17.149 19.399 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.162 4.162 3 C -0.140 4.140 4 C -0.072 4.072 5 N -0.261 5.261 6 C -0.073 4.073 7 C -0.151 4.151 8 C -0.150 4.150 9 C -0.147 4.147 10 C -0.019 4.019 11 H 0.072 0.928 12 C 0.015 3.985 13 N -0.388 5.388 14 C 0.343 3.657 15 O -0.527 6.527 16 C -0.607 4.607 17 H 0.100 0.900 18 C -0.185 4.185 19 N -0.454 5.454 20 Si 0.814 3.186 21 H -0.171 1.171 22 H -0.193 1.193 23 H -0.194 1.194 24 H 0.065 0.935 25 H 0.086 0.914 26 H 0.078 0.922 27 H 0.088 0.912 28 H 0.057 0.943 29 H 0.069 0.931 30 H 0.096 0.904 31 H 0.054 0.946 32 H 0.066 0.934 33 H 0.102 0.898 34 H 0.053 0.947 35 H 0.081 0.919 36 H 0.105 0.895 37 H 0.094 0.906 38 H 0.084 0.916 39 H 0.078 0.922 40 H 0.084 0.916 41 H 0.052 0.948 42 H 0.046 0.954 43 H 0.231 0.769 44 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -5.623 6.259 16.553 18.568 hybrid contribution 0.206 -0.437 -0.282 0.559 sum -5.417 5.822 16.271 18.110 Atomic orbital electron populations 1.21716 0.94574 1.01997 1.02036 1.21482 0.96987 0.96463 1.01313 1.21487 0.93527 0.96805 1.02198 1.22110 0.96443 0.88962 0.99696 1.61801 1.13920 1.16243 1.34181 1.22215 1.01412 0.94987 0.88644 1.21585 0.95934 0.95065 1.02485 1.21549 0.96664 1.00635 0.96201 1.21591 1.00655 0.93290 0.99191 1.21740 0.88816 0.97010 0.94355 0.92756 1.21000 0.93593 0.96199 0.87736 1.45546 1.47626 1.35720 1.09899 1.18575 0.82315 0.82498 0.82330 1.90537 1.47404 1.31661 1.83056 1.21410 1.26672 1.16909 0.95695 0.89952 1.26938 0.95801 0.93737 1.02048 1.70207 1.33568 1.18955 1.22667 0.85021 0.77867 0.79139 0.76559 1.17084 1.19269 1.19367 0.93468 0.91412 0.92204 0.91232 0.94290 0.93070 0.90354 0.94593 0.93368 0.89763 0.94725 0.91905 0.89523 0.90625 0.91570 0.92212 0.91556 0.94819 0.95377 0.76905 0.91744 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.04 9.91 71.98 0.71 -2.32 16 2 C -0.12 -3.07 5.93 30.59 0.18 -2.89 16 3 C -0.10 -2.67 5.19 30.59 0.16 -2.51 16 4 C 0.06 1.64 4.71 86.30 0.41 2.05 16 5 N -0.54 -14.84 3.94 -871.12 -3.43 -18.28 16 6 C 0.05 1.13 5.30 86.32 0.46 1.59 16 7 C -0.11 -2.04 6.09 30.65 0.19 -1.86 16 8 C -0.11 -2.14 6.00 30.68 0.18 -1.95 16 9 C -0.11 -2.82 5.26 30.65 0.16 -2.66 16 10 C 0.09 2.64 2.10 44.93 0.09 2.73 16 11 H 0.05 1.48 8.14 -2.39 -0.02 1.46 16 12 C 0.14 5.72 4.56 86.38 0.39 6.11 16 13 N -0.73 -34.49 5.11 -467.42 -2.39 -36.88 16 14 C 0.54 32.42 7.75 86.36 0.67 33.09 16 15 O -0.64 -44.29 15.02 -4.29 -0.06 -44.35 16 16 C -0.57 -33.48 9.54 24.83 0.24 -33.24 16 17 H 0.08 4.41 7.85 -2.91 -0.02 4.39 16 18 C 0.03 1.68 5.50 85.31 0.47 2.15 16 19 N -0.82 -51.91 11.83 21.84 0.26 -51.65 16 20 Si 0.99 42.27 29.56 68.60 2.03 44.30 16 21 H -0.25 -9.78 7.11 99.48 0.71 -9.07 16 22 H -0.27 -10.91 7.11 99.48 0.71 -10.20 16 23 H -0.27 -10.98 7.11 99.48 0.71 -10.27 16 24 H 0.05 1.06 8.14 -2.38 -0.02 1.04 16 25 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 26 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 27 H 0.07 1.51 8.14 -2.39 -0.02 1.49 16 28 H 0.04 1.15 8.14 -2.39 -0.02 1.13 16 29 H 0.05 1.57 8.14 -2.39 -0.02 1.55 16 30 H 0.08 1.67 6.50 -2.39 -0.02 1.66 16 31 H 0.04 0.96 8.10 -2.39 -0.02 0.94 16 32 H 0.05 1.83 5.67 -2.39 -0.01 1.82 16 33 H 0.08 1.59 6.30 -2.39 -0.02 1.58 16 34 H 0.03 0.68 8.14 -2.39 -0.02 0.66 16 35 H 0.06 1.28 8.14 -2.39 -0.02 1.26 16 36 H 0.09 1.17 8.14 -2.39 -0.02 1.15 16 37 H 0.08 1.26 8.14 -2.39 -0.02 1.24 16 38 H 0.07 1.14 8.14 -2.38 -0.02 1.12 16 39 H 0.06 1.75 7.13 -2.39 -0.02 1.73 16 40 H 0.07 1.69 8.14 -2.39 -0.02 1.67 16 41 H 0.03 1.45 8.14 -2.38 -0.02 1.43 16 42 H 0.03 1.27 6.42 -2.39 -0.02 1.25 16 43 H 0.40 17.02 7.27 -92.71 -0.67 16.35 16 44 H 0.27 15.52 8.29 -92.71 -0.77 14.75 16 Total: -1.00 -75.17 342.16 1.00 -74.17 By element: Atomic # 1 Polarization: 32.10 SS G_CDS: 0.29 Total: 32.39 kcal Atomic # 6 Polarization: -4.02 SS G_CDS: 4.31 Total: 0.30 kcal Atomic # 7 Polarization: -101.24 SS G_CDS: -5.57 Total: -106.81 kcal Atomic # 8 Polarization: -44.29 SS G_CDS: -0.06 Total: -44.35 kcal Atomic # 14 Polarization: 42.27 SS G_CDS: 2.03 Total: 44.30 kcal Total: -75.17 1.00 -74.17 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000355995545.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.597 kcal (2) G-P(sol) polarization free energy of solvation -75.166 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.763 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.999 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.167 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.764 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds