Wall clock time and date at job start Mon Mar 30 2020 00:58:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53003 * 109.46763 * 2 1 4 4 C 1.53001 * 109.47365 * 119.99768 * 2 1 3 5 5 N 1.46897 * 109.47421 * 175.00287 * 4 2 1 6 6 C 1.46897 * 111.00156 * 170.00179 * 5 4 2 7 7 C 1.53241 * 109.33973 * 187.25232 * 6 5 4 8 8 N 1.47075 * 108.52064 * 306.17201 * 7 6 5 9 9 C 1.34780 * 120.87669 * 231.18923 * 8 7 6 10 10 O 1.21280 * 120.00423 * 359.97438 * 9 8 7 11 11 C 1.50701 * 119.99795 * 180.02562 * 9 8 7 12 12 C 1.52997 * 109.47212 * 179.97438 * 11 9 8 13 13 C 1.50697 * 109.47466 * 179.97438 * 12 11 9 14 14 H 1.08001 * 119.99890 * 0.02562 * 13 12 11 15 15 C 1.37876 * 120.00428 * 179.97438 * 13 12 11 16 16 N 1.31517 * 120.00362 * 180.02562 * 15 13 12 17 17 Si 1.86804 * 119.99850 * 359.97438 * 15 13 12 18 18 H 1.48504 * 109.47052 * 89.99717 * 17 15 13 19 19 H 1.48495 * 109.47307 * 209.99656 * 17 15 13 20 20 H 1.48500 * 109.47143 * 330.00164 * 17 15 13 21 21 C 1.47074 * 118.24014 * 51.45789 * 8 7 6 22 22 C 1.46904 * 110.99901 * 294.30247 * 5 4 2 23 23 H 1.08993 * 109.47249 * 299.99877 * 1 2 3 24 24 H 1.09004 * 109.46945 * 60.00642 * 1 2 3 25 25 H 1.09004 * 109.47001 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.47449 * 239.99874 * 2 1 3 27 27 H 1.09000 * 109.47335 * 299.99248 * 3 2 1 28 28 H 1.08993 * 109.47138 * 60.00054 * 3 2 1 29 29 H 1.09003 * 109.46990 * 180.02562 * 3 2 1 30 30 H 1.08994 * 109.46663 * 55.00020 * 4 2 1 31 31 H 1.08997 * 109.47068 * 295.00785 * 4 2 1 32 32 H 1.09001 * 109.49120 * 67.28868 * 6 5 4 33 33 H 1.09003 * 109.48945 * 307.21315 * 6 5 4 34 34 H 1.09003 * 109.62612 * 186.45868 * 7 6 5 35 35 H 1.09003 * 109.62821 * 65.87958 * 7 6 5 36 36 H 1.09002 * 109.47060 * 299.99722 * 11 9 8 37 37 H 1.09001 * 109.47380 * 59.99809 * 11 9 8 38 38 H 1.09002 * 109.47153 * 299.99998 * 12 11 9 39 39 H 1.08998 * 109.47533 * 59.99628 * 12 11 9 40 40 H 0.96994 * 119.99814 * 180.02562 * 16 15 13 41 41 H 1.08994 * 109.63016 * 68.25422 * 21 8 7 42 42 H 1.09001 * 109.62513 * 188.83332 * 21 8 7 43 43 H 1.08997 * 109.49121 * 292.70801 * 22 5 4 44 44 H 1.08999 * 109.49142 * 52.78600 * 22 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0401 -0.7212 1.2493 5 7 3.5041 -0.8266 1.1905 6 6 4.0499 -1.2964 2.4708 7 6 5.5798 -1.2201 2.4288 8 7 6.0519 -1.9537 1.2447 9 6 7.0104 -2.8952 1.3510 10 8 7.4959 -3.1468 2.4336 11 6 7.4798 -3.6345 0.1246 12 6 8.5643 -4.6392 0.5185 13 6 9.0332 -5.3790 -0.7078 14 1 8.6012 -5.1547 -1.6719 15 6 10.0144 -6.3415 -0.5992 16 7 10.4240 -6.9867 -1.6695 17 14 10.7631 -6.7281 1.0680 18 1 9.9806 -7.8063 1.7240 19 1 12.1677 -7.1752 0.8882 20 1 10.7361 -5.5101 1.9171 21 6 5.4545 -1.6285 -0.0593 22 6 3.9254 -1.6930 0.0815 23 1 -0.3633 0.5138 0.8899 24 1 -0.3633 0.5138 -0.8901 25 1 -0.3633 -1.0277 -0.0005 26 1 1.8934 -0.5138 -0.8900 27 1 1.6767 1.9564 -0.8900 28 1 1.6766 1.9563 0.8899 29 1 3.1299 1.4426 -0.0005 30 1 1.6054 -1.7197 1.2952 31 1 1.7516 -0.1583 2.1370 32 1 3.7417 -2.3280 2.6409 33 1 3.6763 -0.6669 3.2784 34 1 5.9939 -1.6733 3.3295 35 1 5.8928 -0.1780 2.3627 36 1 6.6393 -4.1639 -0.3244 37 1 7.8873 -2.9238 -0.5944 38 1 9.4046 -4.1095 0.9672 39 1 8.1572 -5.3500 1.2377 40 1 11.1140 -7.6641 -1.5930 41 1 5.7557 -0.6250 -0.3600 42 1 5.7858 -2.3519 -0.8044 43 1 3.6189 -2.7190 0.2849 44 1 3.4615 -1.3510 -0.8437 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000359886264.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:58:19 Heat of formation + Delta-G solvation = -45.445815 kcal Electronic energy + Delta-G solvation = -21001.474408 eV Core-core repulsion = 17953.207233 eV Total energy + Delta-G solvation = -3048.267175 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.06092 -38.38988 -36.00205 -33.65915 -33.46127 -31.65333 -30.83874 -28.26062 -27.36153 -26.13642 -24.37601 -23.84679 -21.77547 -20.43708 -20.05792 -18.54423 -17.31487 -16.43910 -15.75613 -15.51529 -15.36606 -15.18580 -15.13307 -14.49733 -14.06981 -13.86104 -13.51838 -13.24258 -12.91770 -12.66895 -12.54867 -12.41198 -12.22757 -11.97498 -11.63806 -11.47533 -11.43771 -11.28127 -11.15929 -10.98637 -10.95185 -10.61834 -10.12286 -10.01812 -9.77277 -9.21940 -9.12824 -8.75020 -8.50296 -8.32716 -6.02472 -4.01087 3.09590 3.17422 3.38506 3.45054 3.56441 3.65330 4.45378 4.51719 4.65266 4.67893 4.85336 4.88251 5.02720 5.12791 5.18176 5.25965 5.27120 5.33113 5.37865 5.40067 5.42317 5.50407 5.63069 5.63764 5.70984 5.74740 5.80821 5.85969 5.96547 6.04068 6.05537 6.09773 6.15798 6.60978 6.70484 6.80728 6.83070 7.37362 7.44482 7.66399 7.80420 8.49996 8.63509 9.00435 9.60772 11.10361 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.036116 B = 0.003555 C = 0.003365 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 775.103955 B = 7874.317299 C = 8319.066665 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.095 4.095 3 C -0.138 4.138 4 C 0.060 3.940 5 N -0.535 5.535 6 C 0.043 3.957 7 C 0.116 3.884 8 N -0.625 5.625 9 C 0.513 3.487 10 O -0.542 6.542 11 C -0.120 4.120 12 C 0.002 3.998 13 C -0.524 4.524 14 H 0.072 0.928 15 C 0.069 3.931 16 N -0.904 5.904 17 Si 0.877 3.123 18 H -0.277 1.277 19 H -0.288 1.288 20 H -0.261 1.261 21 C 0.114 3.886 22 C 0.037 3.963 23 H 0.054 0.946 24 H 0.056 0.944 25 H 0.052 0.948 26 H 0.072 0.928 27 H 0.046 0.954 28 H 0.048 0.952 29 H 0.067 0.933 30 H 0.032 0.968 31 H 0.074 0.926 32 H 0.037 0.963 33 H 0.083 0.917 34 H 0.093 0.907 35 H 0.069 0.931 36 H 0.084 0.916 37 H 0.086 0.914 38 H 0.023 0.977 39 H 0.018 0.982 40 H 0.263 0.737 41 H 0.074 0.926 42 H 0.096 0.904 43 H 0.040 0.960 44 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.786 16.364 4.052 25.994 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.114 4.114 3 C -0.195 4.195 4 C -0.068 4.068 5 N -0.260 5.260 6 C -0.085 4.085 7 C -0.007 4.007 8 N -0.361 5.361 9 C 0.303 3.697 10 O -0.418 6.418 11 C -0.160 4.160 12 C -0.036 4.036 13 C -0.562 4.562 14 H 0.091 0.909 15 C -0.132 4.132 16 N -0.543 5.543 17 Si 0.704 3.296 18 H -0.203 1.203 19 H -0.214 1.214 20 H -0.185 1.185 21 C -0.010 4.010 22 C -0.092 4.092 23 H 0.073 0.927 24 H 0.075 0.925 25 H 0.071 0.929 26 H 0.090 0.910 27 H 0.065 0.935 28 H 0.068 0.932 29 H 0.086 0.914 30 H 0.051 0.949 31 H 0.092 0.908 32 H 0.056 0.944 33 H 0.101 0.899 34 H 0.111 0.889 35 H 0.087 0.913 36 H 0.102 0.898 37 H 0.104 0.896 38 H 0.042 0.958 39 H 0.036 0.964 40 H 0.073 0.927 41 H 0.092 0.908 42 H 0.114 0.886 43 H 0.058 0.942 44 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -19.183 16.539 4.500 25.725 hybrid contribution -0.042 -1.083 0.873 1.392 sum -19.225 15.456 5.373 25.246 Atomic orbital electron populations 1.21824 0.95221 1.01613 1.01865 1.21162 0.95059 0.97280 0.97899 1.21715 1.02266 0.94769 1.00739 1.22184 0.86997 0.98852 0.98776 1.61933 1.09658 1.50594 1.03818 1.22478 0.95547 0.98928 0.91575 1.21568 0.92319 0.96802 0.89986 1.48319 1.40100 1.39403 1.08288 1.21559 0.77622 0.78326 0.92163 1.90636 1.56018 1.65306 1.29817 1.21679 1.01200 0.99042 0.94097 1.19373 0.93311 0.93694 0.97243 1.21108 1.21111 1.19796 0.94189 0.90944 1.24970 0.96195 0.95539 0.96531 1.69911 1.30386 1.25360 1.28626 0.86798 0.78308 0.79472 0.84998 1.20271 1.21436 1.18514 1.21899 0.91530 1.02112 0.85456 1.22658 0.96034 0.95255 0.95228 0.92722 0.92470 0.92883 0.91003 0.93486 0.93245 0.91389 0.94948 0.90802 0.94442 0.89896 0.88905 0.91284 0.89782 0.89599 0.95821 0.96363 0.92724 0.90810 0.88617 0.94204 0.89344 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.91 9.19 37.16 0.34 -0.57 16 2 C -0.10 -0.68 2.84 -90.62 -0.26 -0.94 16 3 C -0.14 -1.00 9.08 37.16 0.34 -0.66 16 4 C 0.06 0.48 4.35 -3.82 -0.02 0.47 16 5 N -0.54 -5.12 4.08 -234.03 -0.96 -6.08 16 6 C 0.04 0.45 5.62 -3.70 -0.02 0.43 16 7 C 0.12 1.47 6.60 -3.60 -0.02 1.45 16 8 N -0.63 -9.13 3.00 -172.19 -0.52 -9.65 16 9 C 0.51 9.74 7.71 -10.98 -0.08 9.66 16 10 O -0.54 -12.31 15.43 5.56 0.09 -12.23 16 11 C -0.12 -2.39 4.00 -27.88 -0.11 -2.50 16 12 C 0.00 0.04 3.33 -27.89 -0.09 -0.05 16 13 C -0.52 -15.09 9.66 -34.44 -0.33 -15.42 16 14 H 0.07 2.17 7.99 -52.49 -0.42 1.75 16 15 C 0.07 2.05 5.47 -17.82 -0.10 1.96 16 16 N -0.90 -28.14 13.96 55.43 0.77 -27.37 16 17 Si 0.88 22.79 27.47 -169.99 -4.67 18.12 16 18 H -0.28 -7.08 7.11 56.52 0.40 -6.68 16 19 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16 20 H -0.26 -6.76 6.54 56.52 0.37 -6.39 16 21 C 0.11 1.30 6.53 -3.37 -0.02 1.27 16 22 C 0.04 0.36 5.48 -3.46 -0.02 0.35 16 23 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 24 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 25 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 26 H 0.07 0.54 6.19 -51.93 -0.32 0.22 16 27 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 28 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 29 H 0.07 0.57 7.75 -51.93 -0.40 0.17 16 30 H 0.03 0.28 8.12 -51.93 -0.42 -0.14 16 31 H 0.07 0.56 7.97 -51.93 -0.41 0.15 16 32 H 0.04 0.43 8.14 -51.93 -0.42 0.01 16 33 H 0.08 0.71 7.99 -51.93 -0.41 0.30 16 34 H 0.09 1.32 7.06 -51.93 -0.37 0.95 16 35 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 36 H 0.08 1.54 7.67 -51.93 -0.40 1.14 16 37 H 0.09 1.58 7.99 -51.93 -0.41 1.16 16 38 H 0.02 0.63 7.15 -51.93 -0.37 0.25 16 39 H 0.02 0.48 7.53 -51.93 -0.39 0.08 16 40 H 0.26 7.68 8.31 -40.82 -0.34 7.34 16 41 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 42 H 0.10 1.08 6.02 -51.93 -0.31 0.77 16 43 H 0.04 0.44 8.14 -51.93 -0.42 0.02 16 44 H 0.09 0.73 6.07 -51.93 -0.32 0.42 16 LS Contribution 341.67 15.07 5.15 5.15 Total: -1.00 -33.30 341.67 -8.47 -41.77 By element: Atomic # 1 Polarization: 2.78 SS G_CDS: -7.94 Total: -5.15 kcal Atomic # 6 Polarization: -4.16 SS G_CDS: -0.40 Total: -4.56 kcal Atomic # 7 Polarization: -42.40 SS G_CDS: -0.70 Total: -43.09 kcal Atomic # 8 Polarization: -12.31 SS G_CDS: 0.09 Total: -12.23 kcal Atomic # 14 Polarization: 22.79 SS G_CDS: -4.67 Total: 18.12 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -33.30 -8.47 -41.77 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000359886264.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.675 kcal (2) G-P(sol) polarization free energy of solvation -33.301 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.976 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.470 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.771 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.446 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds