Wall clock time and date at job start Mon Mar 30 2020 00:58:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53003 * 109.46763 * 2 1 4 4 C 1.53001 * 109.47365 * 119.99768 * 2 1 3 5 5 N 1.46897 * 109.47421 * 175.00287 * 4 2 1 6 6 C 1.46897 * 111.00156 * 170.00179 * 5 4 2 7 7 C 1.53241 * 109.33973 * 187.25232 * 6 5 4 8 8 N 1.47075 * 108.52064 * 306.17201 * 7 6 5 9 9 C 1.34780 * 120.87669 * 231.18923 * 8 7 6 10 10 O 1.21280 * 120.00423 * 359.97438 * 9 8 7 11 11 C 1.50701 * 119.99795 * 180.02562 * 9 8 7 12 12 C 1.52997 * 109.47212 * 179.97438 * 11 9 8 13 13 C 1.50697 * 109.47466 * 179.97438 * 12 11 9 14 14 H 1.08001 * 119.99890 * 0.02562 * 13 12 11 15 15 C 1.37876 * 120.00428 * 179.97438 * 13 12 11 16 16 N 1.31517 * 120.00362 * 180.02562 * 15 13 12 17 17 Si 1.86804 * 119.99850 * 359.97438 * 15 13 12 18 18 H 1.48504 * 109.47052 * 89.99717 * 17 15 13 19 19 H 1.48495 * 109.47307 * 209.99656 * 17 15 13 20 20 H 1.48500 * 109.47143 * 330.00164 * 17 15 13 21 21 C 1.47074 * 118.24014 * 51.45789 * 8 7 6 22 22 C 1.46904 * 110.99901 * 294.30247 * 5 4 2 23 23 H 1.08993 * 109.47249 * 299.99877 * 1 2 3 24 24 H 1.09004 * 109.46945 * 60.00642 * 1 2 3 25 25 H 1.09004 * 109.47001 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.47449 * 239.99874 * 2 1 3 27 27 H 1.09000 * 109.47335 * 299.99248 * 3 2 1 28 28 H 1.08993 * 109.47138 * 60.00054 * 3 2 1 29 29 H 1.09003 * 109.46990 * 180.02562 * 3 2 1 30 30 H 1.08994 * 109.46663 * 55.00020 * 4 2 1 31 31 H 1.08997 * 109.47068 * 295.00785 * 4 2 1 32 32 H 1.09001 * 109.49120 * 67.28868 * 6 5 4 33 33 H 1.09003 * 109.48945 * 307.21315 * 6 5 4 34 34 H 1.09003 * 109.62612 * 186.45868 * 7 6 5 35 35 H 1.09003 * 109.62821 * 65.87958 * 7 6 5 36 36 H 1.09002 * 109.47060 * 299.99722 * 11 9 8 37 37 H 1.09001 * 109.47380 * 59.99809 * 11 9 8 38 38 H 1.09002 * 109.47153 * 299.99998 * 12 11 9 39 39 H 1.08998 * 109.47533 * 59.99628 * 12 11 9 40 40 H 0.96994 * 119.99814 * 180.02562 * 16 15 13 41 41 H 1.08994 * 109.63016 * 68.25422 * 21 8 7 42 42 H 1.09001 * 109.62513 * 188.83332 * 21 8 7 43 43 H 1.08997 * 109.49121 * 292.70801 * 22 5 4 44 44 H 1.08999 * 109.49142 * 52.78600 * 22 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0401 -0.7212 1.2493 5 7 3.5041 -0.8266 1.1905 6 6 4.0499 -1.2964 2.4708 7 6 5.5798 -1.2201 2.4288 8 7 6.0519 -1.9537 1.2447 9 6 7.0104 -2.8952 1.3510 10 8 7.4959 -3.1468 2.4336 11 6 7.4798 -3.6345 0.1246 12 6 8.5643 -4.6392 0.5185 13 6 9.0332 -5.3790 -0.7078 14 1 8.6012 -5.1547 -1.6719 15 6 10.0144 -6.3415 -0.5992 16 7 10.4240 -6.9867 -1.6695 17 14 10.7631 -6.7281 1.0680 18 1 9.9806 -7.8063 1.7240 19 1 12.1677 -7.1752 0.8882 20 1 10.7361 -5.5101 1.9171 21 6 5.4545 -1.6285 -0.0593 22 6 3.9254 -1.6930 0.0815 23 1 -0.3633 0.5138 0.8899 24 1 -0.3633 0.5138 -0.8901 25 1 -0.3633 -1.0277 -0.0005 26 1 1.8934 -0.5138 -0.8900 27 1 1.6767 1.9564 -0.8900 28 1 1.6766 1.9563 0.8899 29 1 3.1299 1.4426 -0.0005 30 1 1.6054 -1.7197 1.2952 31 1 1.7516 -0.1583 2.1370 32 1 3.7417 -2.3280 2.6409 33 1 3.6763 -0.6669 3.2784 34 1 5.9939 -1.6733 3.3295 35 1 5.8928 -0.1780 2.3627 36 1 6.6393 -4.1639 -0.3244 37 1 7.8873 -2.9238 -0.5944 38 1 9.4046 -4.1095 0.9672 39 1 8.1572 -5.3500 1.2377 40 1 11.1140 -7.6641 -1.5930 41 1 5.7557 -0.6250 -0.3600 42 1 5.7858 -2.3519 -0.8044 43 1 3.6189 -2.7190 0.2849 44 1 3.4615 -1.3510 -0.8437 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000359886264.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:58:18 Heat of formation + Delta-G solvation = -67.001398 kcal Electronic energy + Delta-G solvation = -21002.409128 eV Core-core repulsion = 17953.207233 eV Total energy + Delta-G solvation = -3049.201895 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.25819 -39.45315 -36.92441 -35.60485 -34.53553 -33.39106 -32.06581 -29.37165 -27.88056 -27.79448 -25.29705 -24.83436 -23.32174 -21.80524 -20.70752 -19.86053 -19.13029 -17.95840 -16.86882 -16.74959 -16.49249 -16.25992 -16.04033 -15.86885 -15.33853 -14.89778 -14.87962 -14.60343 -14.32898 -13.87496 -13.51051 -13.48323 -13.33149 -12.96438 -12.92463 -12.70317 -12.43605 -12.30514 -12.26629 -12.01336 -11.98885 -11.78020 -11.74215 -11.62496 -11.40685 -11.25187 -10.79071 -10.71914 -9.79920 -9.26108 -8.32452 -6.35251 1.32009 1.34088 1.49385 1.62428 1.98907 2.34154 2.86292 3.03124 3.62828 3.81553 3.92500 4.02701 4.09021 4.24536 4.29246 4.31939 4.35984 4.37627 4.45006 4.51482 4.65003 4.71180 4.76316 4.83424 4.83811 4.89412 4.94584 4.98906 5.06479 5.13310 5.19162 5.30217 5.34181 5.41513 5.48998 5.54631 5.59164 5.59651 6.02526 6.04681 6.22377 6.38641 6.70704 7.18896 7.30181 8.83159 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.036116 B = 0.003555 C = 0.003365 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 775.103955 B = 7874.317299 C = 8319.066665 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.092 4.092 3 C -0.134 4.134 4 C 0.061 3.939 5 N -0.535 5.535 6 C 0.051 3.949 7 C 0.114 3.886 8 N -0.615 5.615 9 C 0.513 3.487 10 O -0.588 6.588 11 C -0.113 4.113 12 C 0.006 3.994 13 C -0.528 4.528 14 H 0.052 0.948 15 C 0.015 3.985 16 N -0.943 5.943 17 Si 0.937 3.063 18 H -0.269 1.269 19 H -0.277 1.277 20 H -0.263 1.263 21 C 0.107 3.893 22 C 0.042 3.958 23 H 0.058 0.942 24 H 0.061 0.939 25 H 0.052 0.948 26 H 0.070 0.930 27 H 0.051 0.949 28 H 0.050 0.950 29 H 0.056 0.944 30 H 0.028 0.972 31 H 0.081 0.919 32 H 0.023 0.977 33 H 0.105 0.895 34 H 0.074 0.926 35 H 0.084 0.916 36 H 0.099 0.901 37 H 0.102 0.898 38 H 0.009 0.991 39 H 0.006 0.994 40 H 0.268 0.732 41 H 0.090 0.910 42 H 0.097 0.903 43 H 0.028 0.972 44 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.311 17.813 4.441 28.128 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.111 4.111 3 C -0.191 4.191 4 C -0.066 4.066 5 N -0.259 5.259 6 C -0.077 4.077 7 C -0.008 4.008 8 N -0.349 5.349 9 C 0.303 3.697 10 O -0.468 6.468 11 C -0.152 4.152 12 C -0.032 4.032 13 C -0.566 4.566 14 H 0.070 0.930 15 C -0.183 4.183 16 N -0.583 5.583 17 Si 0.762 3.238 18 H -0.194 1.194 19 H -0.202 1.202 20 H -0.187 1.187 21 C -0.015 4.015 22 C -0.087 4.087 23 H 0.077 0.923 24 H 0.080 0.920 25 H 0.071 0.929 26 H 0.088 0.912 27 H 0.070 0.930 28 H 0.069 0.931 29 H 0.075 0.925 30 H 0.047 0.953 31 H 0.100 0.900 32 H 0.042 0.958 33 H 0.123 0.877 34 H 0.093 0.907 35 H 0.102 0.898 36 H 0.118 0.882 37 H 0.120 0.880 38 H 0.027 0.973 39 H 0.025 0.975 40 H 0.077 0.923 41 H 0.109 0.891 42 H 0.116 0.884 43 H 0.046 0.954 44 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -20.758 18.024 4.864 27.918 hybrid contribution 0.350 -1.458 0.672 1.643 sum -20.408 16.566 5.537 26.862 Atomic orbital electron populations 1.21799 0.94408 1.01749 1.02328 1.21142 0.95695 0.97047 0.97216 1.21670 1.01474 0.94831 1.01115 1.22226 0.85773 0.98905 0.99699 1.61965 1.10734 1.50043 1.03191 1.22398 0.93749 0.98740 0.92842 1.21713 0.93893 0.96861 0.88376 1.48319 1.38459 1.37783 1.10325 1.21268 0.78401 0.79101 0.90926 1.90616 1.58062 1.67120 1.31018 1.21493 1.00197 0.98512 0.95043 1.19214 0.94445 0.94266 0.95225 1.21406 1.20719 1.19828 0.94642 0.93001 1.25783 0.96927 0.95675 0.99927 1.70016 1.31363 1.26295 1.30635 0.85848 0.78064 0.79234 0.80686 1.19404 1.20222 1.18724 1.22170 0.92509 1.03017 0.83788 1.22628 0.94827 0.94866 0.96374 0.92319 0.91990 0.92926 0.91219 0.92983 0.93057 0.92470 0.95343 0.90017 0.95833 0.87657 0.90743 0.89828 0.88249 0.88025 0.97278 0.97537 0.92339 0.89142 0.88437 0.95391 0.87267 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.44 9.19 71.98 0.66 -0.78 16 2 C -0.09 -1.08 2.84 -10.79 -0.03 -1.11 16 3 C -0.13 -1.59 9.08 71.98 0.65 -0.94 16 4 C 0.06 0.84 4.35 86.30 0.38 1.21 16 5 N -0.53 -8.91 4.08 -894.33 -3.65 -12.56 16 6 C 0.05 0.96 5.62 86.38 0.49 1.45 16 7 C 0.11 2.72 6.60 86.35 0.57 3.29 16 8 N -0.62 -17.16 3.00 -817.07 -2.45 -19.61 16 9 C 0.51 19.24 7.71 87.66 0.68 19.91 16 10 O -0.59 -26.95 15.43 -3.03 -0.05 -27.00 16 11 C -0.11 -4.41 4.00 29.85 0.12 -4.29 16 12 C 0.01 0.33 3.33 29.85 0.10 0.43 16 13 C -0.53 -30.71 9.66 25.60 0.25 -30.47 16 14 H 0.05 3.15 7.99 -2.91 -0.02 3.13 16 15 C 0.01 0.88 5.47 84.65 0.46 1.34 16 16 N -0.94 -59.24 13.96 21.45 0.30 -58.94 16 17 Si 0.94 47.27 27.47 68.60 1.88 49.15 16 18 H -0.27 -13.13 7.11 99.48 0.71 -12.42 16 19 H -0.28 -13.35 7.11 99.48 0.71 -12.64 16 20 H -0.26 -13.26 6.54 99.48 0.65 -12.61 16 21 C 0.11 2.21 6.53 86.50 0.57 2.78 16 22 C 0.04 0.73 5.48 86.54 0.47 1.20 16 23 H 0.06 0.54 8.14 -2.39 -0.02 0.52 16 24 H 0.06 0.57 8.14 -2.38 -0.02 0.55 16 25 H 0.05 0.53 8.14 -2.38 -0.02 0.51 16 26 H 0.07 0.86 6.19 -2.39 -0.01 0.84 16 27 H 0.05 0.57 8.14 -2.39 -0.02 0.55 16 28 H 0.05 0.59 8.14 -2.39 -0.02 0.57 16 29 H 0.06 0.82 7.75 -2.39 -0.02 0.80 16 30 H 0.03 0.42 8.12 -2.39 -0.02 0.40 16 31 H 0.08 1.01 7.97 -2.39 -0.02 0.99 16 32 H 0.02 0.51 8.14 -2.39 -0.02 0.49 16 33 H 0.11 1.53 7.99 -2.39 -0.02 1.51 16 34 H 0.07 2.09 7.06 -2.39 -0.02 2.07 16 35 H 0.08 1.78 8.14 -2.39 -0.02 1.76 16 36 H 0.10 3.55 7.67 -2.39 -0.02 3.53 16 37 H 0.10 3.62 7.99 -2.39 -0.02 3.60 16 38 H 0.01 0.47 7.15 -2.39 -0.02 0.46 16 39 H 0.01 0.33 7.53 -2.39 -0.02 0.31 16 40 H 0.27 15.71 8.31 -92.71 -0.77 14.94 16 41 H 0.09 1.64 8.14 -2.39 -0.02 1.62 16 42 H 0.10 1.99 6.02 -2.39 -0.01 1.98 16 43 H 0.03 0.57 8.14 -2.39 -0.02 0.55 16 44 H 0.11 1.50 6.07 -2.39 -0.01 1.48 16 Total: -1.00 -71.70 341.67 2.28 -69.43 By element: Atomic # 1 Polarization: 4.61 SS G_CDS: 0.89 Total: 5.50 kcal Atomic # 6 Polarization: -11.33 SS G_CDS: 5.36 Total: -5.97 kcal Atomic # 7 Polarization: -85.31 SS G_CDS: -5.81 Total: -91.11 kcal Atomic # 8 Polarization: -26.95 SS G_CDS: -0.05 Total: -27.00 kcal Atomic # 14 Polarization: 47.27 SS G_CDS: 1.88 Total: 49.15 kcal Total: -71.70 2.28 -69.43 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000359886264.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.424 kcal (2) G-P(sol) polarization free energy of solvation -71.703 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.279 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.278 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.425 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.001 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds