Wall clock time and date at job start Mon Mar 30 2020 00:41:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53003 * 109.46713 * 2 1 4 4 C 1.52995 * 109.46974 * 119.99678 * 2 1 3 5 5 H 1.08996 * 109.78906 * 187.09472 * 4 2 1 6 6 C 1.53701 * 109.70517 * 307.83673 * 4 2 1 7 7 N 1.46900 * 109.25600 * 173.68934 * 6 4 2 8 8 C 1.46903 * 110.99781 * 172.60643 * 7 6 4 9 9 C 1.46896 * 111.26887 * 296.75316 * 7 6 4 10 10 C 1.53239 * 109.34226 * 63.10657 * 9 7 6 11 11 N 1.47083 * 109.62692 * 66.61092 * 4 2 1 12 12 C 1.34767 * 120.88126 * 9.10127 * 11 4 2 13 13 O 1.21283 * 120.00258 * 355.49266 * 12 11 4 14 14 C 1.50703 * 120.00313 * 175.48785 * 12 11 4 15 15 C 1.52998 * 109.47473 * 180.02562 * 14 12 11 16 16 C 1.50697 * 109.47173 * 180.02562 * 15 14 12 17 17 H 1.08001 * 119.99909 * 359.97438 * 16 15 14 18 18 C 1.37875 * 120.00288 * 179.97438 * 16 15 14 19 19 N 1.31518 * 120.00402 * 179.97438 * 18 16 15 20 20 Si 1.86802 * 119.99645 * 0.02562 * 18 16 15 21 21 H 1.48498 * 109.47299 * 269.99866 * 20 18 16 22 22 H 1.48502 * 109.47000 * 149.99830 * 20 18 16 23 23 H 1.48500 * 109.47492 * 29.99998 * 20 18 16 24 24 H 1.08995 * 109.46815 * 70.54413 * 1 2 3 25 25 H 1.09007 * 109.46788 * 190.53552 * 1 2 3 26 26 H 1.08993 * 109.47321 * 310.53868 * 1 2 3 27 27 H 1.08992 * 109.47661 * 240.00350 * 2 1 3 28 28 H 1.09000 * 109.47048 * 174.86397 * 3 2 1 29 29 H 1.08994 * 109.47386 * 294.87047 * 3 2 1 30 30 H 1.09005 * 109.47177 * 54.87072 * 3 2 1 31 31 H 1.08994 * 109.64632 * 53.68298 * 6 4 2 32 32 H 1.09001 * 109.41641 * 293.55177 * 6 4 2 33 33 H 1.08999 * 109.46784 * 188.25208 * 8 7 6 34 34 H 1.08996 * 109.47554 * 308.25695 * 8 7 6 35 35 H 1.09004 * 109.46639 * 68.25461 * 8 7 6 36 36 H 1.09005 * 109.49773 * 303.14803 * 9 7 6 37 37 H 1.08999 * 109.52076 * 183.07956 * 9 7 6 38 38 H 1.08998 * 109.63667 * 186.45939 * 10 9 7 39 39 H 1.09010 * 109.78558 * 65.96895 * 10 9 7 40 40 H 1.09001 * 109.47035 * 59.99286 * 14 12 11 41 41 H 1.09009 * 109.46849 * 300.00143 * 14 12 11 42 42 H 1.08996 * 109.47142 * 59.99997 * 15 14 12 43 43 H 1.08999 * 109.46442 * 300.00005 * 15 14 12 44 44 H 0.96995 * 119.99563 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0400 -0.7212 1.2493 5 1 3.1225 -0.6158 1.3201 6 6 1.3759 -0.1236 2.5000 7 7 1.7544 -0.9184 3.6760 8 6 1.2856 -0.2822 4.9144 9 6 1.2561 -2.2963 3.5708 10 6 1.9095 -2.9816 2.3660 11 7 1.6861 -2.1469 1.1757 12 6 1.1759 -2.6756 0.0459 13 8 0.9265 -1.9589 -0.9002 14 6 0.9154 -4.1573 -0.0420 15 6 0.3412 -4.4934 -1.4197 16 6 0.0801 -5.9750 -1.5073 17 1 0.3019 -6.6132 -0.6647 18 6 -0.4420 -6.5159 -2.6631 19 7 -0.6694 -7.8090 -2.7397 20 14 -0.8250 -5.4122 -4.1207 21 1 -2.2220 -4.9200 -4.0153 22 1 -0.6652 -6.1825 -5.3803 23 1 0.1079 -4.2568 -4.1255 24 1 -0.3633 0.3423 -0.9690 25 1 -0.3633 -1.0104 0.1879 26 1 -0.3633 0.6679 0.7809 27 1 1.8934 -0.5137 -0.8899 28 1 3.1261 1.4440 0.0920 29 1 1.7536 1.9292 -0.9323 30 1 1.6035 1.9822 0.8405 31 1 0.2923 -0.1404 2.3830 32 1 1.7120 0.9048 2.6325 33 1 1.7017 -0.8087 5.7733 34 1 1.6099 0.7582 4.9338 35 1 0.1971 -0.3243 4.9548 36 1 0.1742 -2.2829 3.4389 37 1 1.5049 -2.8440 4.4798 38 1 1.4600 -3.9630 2.2145 39 1 2.9800 -3.0921 2.5400 40 1 0.2024 -4.4472 0.7299 41 1 1.8496 -4.6998 0.1042 42 1 1.0546 -4.2036 -2.1912 43 1 -0.5928 -3.9509 -1.5662 44 1 -1.0363 -8.1895 -3.5530 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000360244455.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:41:47 Heat of formation + Delta-G solvation = -12.160596 kcal Electronic energy + Delta-G solvation = -22071.871801 eV Core-core repulsion = 19025.047981 eV Total energy + Delta-G solvation = -3046.823819 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.70842 -37.95170 -35.60703 -34.40475 -33.36048 -31.18808 -29.98503 -28.47576 -27.01853 -26.24438 -24.26848 -24.16810 -21.66494 -20.97945 -19.70682 -18.40489 -17.00936 -16.13288 -15.96536 -15.66523 -15.44894 -15.04034 -14.83345 -14.21101 -13.94344 -13.48199 -13.45795 -13.28764 -12.94066 -12.56422 -12.42031 -12.21146 -12.14668 -11.95635 -11.74922 -11.49939 -11.29019 -11.22209 -11.01447 -10.64171 -10.48418 -10.48153 -10.06180 -9.96141 -9.73165 -9.17281 -8.71652 -8.52525 -8.50287 -8.19161 -6.02681 -4.01219 3.09161 3.16945 3.37772 3.44521 3.55137 3.72561 4.51069 4.65666 4.76680 4.85573 4.98871 5.09856 5.20094 5.22905 5.26391 5.33001 5.37691 5.41162 5.43685 5.53671 5.60381 5.61651 5.72925 5.78896 5.90376 5.91978 6.04320 6.06751 6.09579 6.20177 6.32901 6.51216 6.68497 6.68990 6.78691 6.79502 6.96714 7.37097 7.44704 7.70207 7.81668 8.50744 8.68261 9.00547 9.60584 11.10246 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.024739 B = 0.005200 C = 0.004496 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1131.563994 B = 5383.677020 C = 6226.359361 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.101 4.101 3 C -0.151 4.151 4 C 0.158 3.842 5 H 0.073 0.927 6 C 0.041 3.959 7 N -0.545 5.545 8 C 0.026 3.974 9 C 0.040 3.960 10 C 0.113 3.887 11 N -0.620 5.620 12 C 0.508 3.492 13 O -0.523 6.523 14 C -0.123 4.123 15 C 0.003 3.997 16 C -0.524 4.524 17 H 0.072 0.928 18 C 0.069 3.931 19 N -0.904 5.904 20 Si 0.877 3.123 21 H -0.277 1.277 22 H -0.289 1.289 23 H -0.261 1.261 24 H 0.049 0.951 25 H 0.062 0.938 26 H 0.029 0.971 27 H 0.118 0.882 28 H 0.050 0.950 29 H 0.055 0.945 30 H 0.046 0.954 31 H 0.045 0.955 32 H 0.081 0.919 33 H 0.069 0.931 34 H 0.066 0.934 35 H 0.024 0.976 36 H 0.040 0.960 37 H 0.086 0.914 38 H 0.096 0.904 39 H 0.073 0.927 40 H 0.082 0.918 41 H 0.084 0.916 42 H 0.023 0.977 43 H 0.018 0.982 44 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.489 16.447 14.181 22.400 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.120 4.120 3 C -0.209 4.209 4 C 0.055 3.945 5 H 0.091 0.909 6 C -0.087 4.087 7 N -0.269 5.269 8 C -0.122 4.122 9 C -0.089 4.089 10 C -0.011 4.011 11 N -0.356 5.356 12 C 0.300 3.700 13 O -0.400 6.400 14 C -0.162 4.162 15 C -0.034 4.034 16 C -0.562 4.562 17 H 0.090 0.910 18 C -0.132 4.132 19 N -0.543 5.543 20 Si 0.704 3.296 21 H -0.203 1.203 22 H -0.215 1.215 23 H -0.185 1.185 24 H 0.068 0.932 25 H 0.081 0.919 26 H 0.048 0.952 27 H 0.136 0.864 28 H 0.070 0.930 29 H 0.074 0.926 30 H 0.066 0.934 31 H 0.063 0.937 32 H 0.099 0.901 33 H 0.087 0.913 34 H 0.085 0.915 35 H 0.043 0.957 36 H 0.058 0.942 37 H 0.104 0.896 38 H 0.114 0.886 39 H 0.092 0.908 40 H 0.100 0.900 41 H 0.102 0.898 42 H 0.042 0.958 43 H 0.036 0.964 44 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 5.789 16.655 13.564 22.246 hybrid contribution -1.137 0.469 -0.552 1.348 sum 4.652 17.124 13.012 22.004 Atomic orbital electron populations 1.21878 0.94844 1.01256 1.00019 1.21833 0.97006 0.94382 0.98736 1.21984 1.00509 0.97012 1.01356 1.21444 0.98529 0.80246 0.94306 0.90912 1.22778 0.98898 0.97203 0.89847 1.61932 1.60107 1.02430 1.02457 1.22352 0.97924 0.99784 0.92164 1.22515 0.97688 0.89598 0.99065 1.21803 1.01187 0.94476 0.83624 1.48301 1.64935 1.09162 1.13165 1.21393 0.75563 0.91745 0.81335 1.90634 1.50389 1.60929 1.38005 1.21721 1.02460 0.89239 1.02829 1.19354 0.96263 0.96920 0.90910 1.21116 1.42683 0.91130 1.01273 0.91017 1.24967 0.94869 0.94839 0.98527 1.69913 1.45151 1.11142 1.28104 0.86799 0.79450 0.81273 0.82035 1.20320 1.21489 1.18509 0.93218 0.91921 0.95188 0.86428 0.93045 0.92627 0.93446 0.93692 0.90091 0.91255 0.91491 0.95704 0.94222 0.89589 0.88564 0.90839 0.90019 0.89754 0.95838 0.96383 0.92743 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.83 6.97 37.16 0.26 -1.57 16 2 C -0.10 -1.40 2.16 -90.62 -0.20 -1.60 16 3 C -0.15 -1.66 8.88 37.16 0.33 -1.33 16 4 C 0.16 2.05 2.81 -67.25 -0.19 1.86 16 5 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 6 C 0.04 0.46 4.23 -3.46 -0.01 0.45 16 7 N -0.54 -5.66 4.88 -242.31 -1.18 -6.85 16 8 C 0.03 0.21 9.62 60.07 0.58 0.79 16 9 C 0.04 0.41 5.62 -3.70 -0.02 0.39 16 10 C 0.11 1.29 6.49 -3.60 -0.02 1.27 16 11 N -0.62 -8.85 2.90 -164.65 -0.48 -9.32 16 12 C 0.51 9.08 6.55 -10.99 -0.07 9.00 16 13 O -0.52 -10.58 9.71 5.56 0.05 -10.53 16 14 C -0.12 -2.36 4.06 -27.88 -0.11 -2.48 16 15 C 0.00 0.08 3.33 -27.89 -0.09 -0.01 16 16 C -0.52 -14.92 9.66 -34.44 -0.33 -15.25 16 17 H 0.07 2.13 7.99 -52.49 -0.42 1.72 16 18 C 0.07 2.04 5.47 -17.82 -0.10 1.95 16 19 N -0.90 -28.02 13.96 55.43 0.77 -27.24 16 20 Si 0.88 22.57 27.47 -169.99 -4.67 17.90 16 21 H -0.28 -7.04 7.11 56.52 0.40 -6.64 16 22 H -0.29 -7.30 7.11 56.52 0.40 -6.89 16 23 H -0.26 -6.66 6.54 56.52 0.37 -6.29 16 24 H 0.05 0.77 8.14 -51.93 -0.42 0.34 16 25 H 0.06 1.09 5.49 -51.92 -0.28 0.80 16 26 H 0.03 0.38 6.81 -51.93 -0.35 0.03 16 27 H 0.12 2.00 5.72 -52.97 -0.30 1.70 16 28 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 29 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 30 H 0.05 0.46 7.04 -51.93 -0.37 0.10 16 31 H 0.04 0.56 6.24 -51.93 -0.32 0.23 16 32 H 0.08 0.81 6.99 -51.93 -0.36 0.44 16 33 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 34 H 0.07 0.49 8.00 -51.93 -0.42 0.08 16 35 H 0.02 0.21 8.14 -51.93 -0.42 -0.22 16 36 H 0.04 0.44 8.14 -51.93 -0.42 0.02 16 37 H 0.09 0.72 8.11 -51.93 -0.42 0.30 16 38 H 0.10 1.08 6.04 -51.93 -0.31 0.77 16 39 H 0.07 0.79 8.14 -51.92 -0.42 0.36 16 40 H 0.08 1.47 7.49 -51.93 -0.39 1.08 16 41 H 0.08 1.53 8.13 -51.92 -0.42 1.11 16 42 H 0.02 0.60 7.16 -51.93 -0.37 0.23 16 43 H 0.02 0.46 7.53 -51.93 -0.39 0.07 16 44 H 0.26 7.65 8.31 -40.82 -0.34 7.31 16 LS Contribution 327.70 15.07 4.94 4.94 Total: -1.00 -31.90 327.70 -8.24 -40.13 By element: Atomic # 1 Polarization: 5.20 SS G_CDS: -7.69 Total: -2.49 kcal Atomic # 6 Polarization: -6.55 SS G_CDS: 0.01 Total: -6.54 kcal Atomic # 7 Polarization: -42.53 SS G_CDS: -0.89 Total: -43.42 kcal Atomic # 8 Polarization: -10.58 SS G_CDS: 0.05 Total: -10.53 kcal Atomic # 14 Polarization: 22.57 SS G_CDS: -4.67 Total: 17.90 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -31.90 -8.24 -40.13 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000360244455.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.973 kcal (2) G-P(sol) polarization free energy of solvation -31.898 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.925 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.236 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.134 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.161 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds