Wall clock time and date at job start Mon Mar 30 2020 00:41:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53003 * 109.46713 * 2 1 4 4 C 1.52995 * 109.46974 * 119.99678 * 2 1 3 5 5 H 1.08996 * 109.78906 * 187.09472 * 4 2 1 6 6 C 1.53701 * 109.70517 * 307.83673 * 4 2 1 7 7 N 1.46900 * 109.25600 * 173.68934 * 6 4 2 8 8 C 1.46903 * 110.99781 * 172.60643 * 7 6 4 9 9 C 1.46896 * 111.26887 * 296.75316 * 7 6 4 10 10 C 1.53239 * 109.34226 * 63.10657 * 9 7 6 11 11 N 1.47083 * 109.62692 * 66.61092 * 4 2 1 12 12 C 1.34767 * 120.88126 * 9.10127 * 11 4 2 13 13 O 1.21283 * 120.00258 * 355.49266 * 12 11 4 14 14 C 1.50703 * 120.00313 * 175.48785 * 12 11 4 15 15 C 1.52998 * 109.47473 * 180.02562 * 14 12 11 16 16 C 1.50697 * 109.47173 * 180.02562 * 15 14 12 17 17 H 1.08001 * 119.99909 * 359.97438 * 16 15 14 18 18 C 1.37875 * 120.00288 * 179.97438 * 16 15 14 19 19 N 1.31518 * 120.00402 * 179.97438 * 18 16 15 20 20 Si 1.86802 * 119.99645 * 0.02562 * 18 16 15 21 21 H 1.48498 * 109.47299 * 269.99866 * 20 18 16 22 22 H 1.48502 * 109.47000 * 149.99830 * 20 18 16 23 23 H 1.48500 * 109.47492 * 29.99998 * 20 18 16 24 24 H 1.08995 * 109.46815 * 70.54413 * 1 2 3 25 25 H 1.09007 * 109.46788 * 190.53552 * 1 2 3 26 26 H 1.08993 * 109.47321 * 310.53868 * 1 2 3 27 27 H 1.08992 * 109.47661 * 240.00350 * 2 1 3 28 28 H 1.09000 * 109.47048 * 174.86397 * 3 2 1 29 29 H 1.08994 * 109.47386 * 294.87047 * 3 2 1 30 30 H 1.09005 * 109.47177 * 54.87072 * 3 2 1 31 31 H 1.08994 * 109.64632 * 53.68298 * 6 4 2 32 32 H 1.09001 * 109.41641 * 293.55177 * 6 4 2 33 33 H 1.08999 * 109.46784 * 188.25208 * 8 7 6 34 34 H 1.08996 * 109.47554 * 308.25695 * 8 7 6 35 35 H 1.09004 * 109.46639 * 68.25461 * 8 7 6 36 36 H 1.09005 * 109.49773 * 303.14803 * 9 7 6 37 37 H 1.08999 * 109.52076 * 183.07956 * 9 7 6 38 38 H 1.08998 * 109.63667 * 186.45939 * 10 9 7 39 39 H 1.09010 * 109.78558 * 65.96895 * 10 9 7 40 40 H 1.09001 * 109.47035 * 59.99286 * 14 12 11 41 41 H 1.09009 * 109.46849 * 300.00143 * 14 12 11 42 42 H 1.08996 * 109.47142 * 59.99997 * 15 14 12 43 43 H 1.08999 * 109.46442 * 300.00005 * 15 14 12 44 44 H 0.96995 * 119.99563 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0400 -0.7212 1.2493 5 1 3.1225 -0.6158 1.3201 6 6 1.3759 -0.1236 2.5000 7 7 1.7544 -0.9184 3.6760 8 6 1.2856 -0.2822 4.9144 9 6 1.2561 -2.2963 3.5708 10 6 1.9095 -2.9816 2.3660 11 7 1.6861 -2.1469 1.1757 12 6 1.1759 -2.6756 0.0459 13 8 0.9265 -1.9589 -0.9002 14 6 0.9154 -4.1573 -0.0420 15 6 0.3412 -4.4934 -1.4197 16 6 0.0801 -5.9750 -1.5073 17 1 0.3019 -6.6132 -0.6647 18 6 -0.4420 -6.5159 -2.6631 19 7 -0.6694 -7.8090 -2.7397 20 14 -0.8250 -5.4122 -4.1207 21 1 -2.2220 -4.9200 -4.0153 22 1 -0.6652 -6.1825 -5.3803 23 1 0.1079 -4.2568 -4.1255 24 1 -0.3633 0.3423 -0.9690 25 1 -0.3633 -1.0104 0.1879 26 1 -0.3633 0.6679 0.7809 27 1 1.8934 -0.5137 -0.8899 28 1 3.1261 1.4440 0.0920 29 1 1.7536 1.9292 -0.9323 30 1 1.6035 1.9822 0.8405 31 1 0.2923 -0.1404 2.3830 32 1 1.7120 0.9048 2.6325 33 1 1.7017 -0.8087 5.7733 34 1 1.6099 0.7582 4.9338 35 1 0.1971 -0.3243 4.9548 36 1 0.1742 -2.2829 3.4389 37 1 1.5049 -2.8440 4.4798 38 1 1.4600 -3.9630 2.2145 39 1 2.9800 -3.0921 2.5400 40 1 0.2024 -4.4472 0.7299 41 1 1.8496 -4.6998 0.1042 42 1 1.0546 -4.2036 -2.1912 43 1 -0.5928 -3.9509 -1.5662 44 1 -1.0363 -8.1895 -3.5530 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000360244455.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:41:46 Heat of formation + Delta-G solvation = -33.492298 kcal Electronic energy + Delta-G solvation = -22072.796813 eV Core-core repulsion = 19025.047981 eV Total energy + Delta-G solvation = -3047.748831 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.89063 -39.04676 -36.72458 -35.53960 -35.33769 -33.15413 -30.91903 -29.50872 -28.17170 -27.83321 -25.35696 -25.09726 -23.25127 -22.10595 -21.02470 -19.76728 -18.88784 -17.49463 -17.03936 -16.96503 -16.50728 -16.28800 -15.88619 -15.65370 -15.24086 -14.92305 -14.78693 -14.50402 -14.34061 -14.01578 -13.58572 -13.37035 -13.13355 -13.03207 -12.93013 -12.82321 -12.67046 -12.25755 -12.13283 -12.06069 -11.96837 -11.83324 -11.66947 -11.54357 -11.49677 -11.33851 -10.78325 -9.87541 -9.65011 -9.20345 -8.31856 -6.34466 1.32137 1.34261 1.49193 1.71455 2.02776 2.34317 2.92736 3.04094 3.58729 3.85930 3.93529 4.08937 4.13266 4.22559 4.28239 4.30476 4.37699 4.44441 4.47166 4.60035 4.65638 4.69507 4.78279 4.78843 4.80157 4.88211 5.00367 5.02626 5.04238 5.05668 5.14424 5.30645 5.33372 5.44269 5.45257 5.51325 5.61151 5.80874 6.01737 6.02955 6.23759 6.48718 6.72074 7.30882 7.33163 8.83965 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.024739 B = 0.005200 C = 0.004496 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1131.563994 B = 5383.677020 C = 6226.359361 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.099 4.099 3 C -0.143 4.143 4 C 0.157 3.843 5 H 0.081 0.919 6 C 0.049 3.951 7 N -0.550 5.550 8 C 0.026 3.974 9 C 0.044 3.956 10 C 0.106 3.894 11 N -0.613 5.613 12 C 0.509 3.491 13 O -0.553 6.553 14 C -0.116 4.116 15 C 0.010 3.990 16 C -0.528 4.528 17 H 0.048 0.952 18 C 0.015 3.985 19 N -0.944 5.944 20 Si 0.938 3.062 21 H -0.270 1.270 22 H -0.279 1.279 23 H -0.261 1.261 24 H 0.034 0.966 25 H 0.034 0.966 26 H 0.050 0.950 27 H 0.083 0.917 28 H 0.062 0.938 29 H 0.052 0.948 30 H 0.065 0.935 31 H 0.032 0.968 32 H 0.100 0.900 33 H 0.082 0.918 34 H 0.077 0.923 35 H 0.022 0.978 36 H 0.028 0.972 37 H 0.110 0.890 38 H 0.096 0.904 39 H 0.088 0.912 40 H 0.093 0.907 41 H 0.095 0.905 42 H 0.010 0.990 43 H 0.007 0.993 44 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.240 18.451 15.777 25.066 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.118 4.118 3 C -0.201 4.201 4 C 0.054 3.946 5 H 0.099 0.901 6 C -0.079 4.079 7 N -0.274 5.274 8 C -0.122 4.122 9 C -0.085 4.085 10 C -0.017 4.017 11 N -0.347 5.347 12 C 0.299 3.701 13 O -0.432 6.432 14 C -0.156 4.156 15 C -0.028 4.028 16 C -0.566 4.566 17 H 0.067 0.933 18 C -0.183 4.183 19 N -0.585 5.585 20 Si 0.763 3.237 21 H -0.195 1.195 22 H -0.204 1.204 23 H -0.185 1.185 24 H 0.054 0.946 25 H 0.053 0.947 26 H 0.069 0.931 27 H 0.101 0.899 28 H 0.081 0.919 29 H 0.071 0.929 30 H 0.084 0.916 31 H 0.050 0.950 32 H 0.118 0.882 33 H 0.101 0.899 34 H 0.096 0.904 35 H 0.041 0.959 36 H 0.046 0.954 37 H 0.128 0.872 38 H 0.115 0.885 39 H 0.106 0.894 40 H 0.111 0.889 41 H 0.113 0.887 42 H 0.028 0.972 43 H 0.025 0.975 44 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 6.555 18.669 15.209 24.956 hybrid contribution -1.338 -0.191 -0.953 1.653 sum 5.217 18.478 14.256 23.914 Atomic orbital electron populations 1.21772 0.95766 0.99846 0.99818 1.21658 0.96141 0.96140 0.97849 1.21901 1.01254 0.94875 1.02045 1.21559 0.99038 0.79152 0.94857 0.90144 1.22675 0.97825 0.98108 0.89311 1.61964 1.60183 1.02388 1.02900 1.22419 0.97879 1.00482 0.91386 1.22507 0.96764 0.89954 0.99252 1.22049 1.02297 0.94318 0.83008 1.48273 1.63368 1.10271 1.12755 1.21001 0.76159 0.90810 0.82149 1.90657 1.51949 1.61222 1.39398 1.21525 1.02964 0.91133 0.99928 1.19175 0.95642 0.94131 0.93822 1.21433 1.41830 0.92877 1.00454 0.93323 1.25782 0.95003 0.96068 1.01423 1.70025 1.46480 1.12792 1.29181 0.85834 0.79424 0.79427 0.79046 1.19510 1.20406 1.18503 0.94648 0.94710 0.93148 0.89873 0.91884 0.92864 0.91650 0.94992 0.88209 0.89929 0.90388 0.95917 0.95412 0.87193 0.88531 0.89417 0.88872 0.88687 0.97177 0.97455 0.92403 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -3.39 6.97 71.98 0.50 -2.89 16 2 C -0.10 -2.66 2.16 -10.79 -0.02 -2.69 16 3 C -0.14 -2.84 8.88 71.98 0.64 -2.20 16 4 C 0.16 3.77 2.81 45.11 0.13 3.90 16 5 H 0.08 1.85 8.14 -2.39 -0.02 1.83 16 6 C 0.05 0.97 4.23 86.54 0.37 1.33 16 7 N -0.55 -9.70 4.88 -920.52 -4.49 -14.20 16 8 C 0.03 0.34 9.62 127.69 1.23 1.57 16 9 C 0.04 0.78 5.62 86.38 0.49 1.27 16 10 C 0.11 2.22 6.49 86.35 0.56 2.78 16 11 N -0.61 -16.79 2.90 -793.22 -2.30 -19.10 16 12 C 0.51 18.15 6.55 87.66 0.57 18.72 16 13 O -0.55 -22.82 9.71 -3.04 -0.03 -22.85 16 14 C -0.12 -4.47 4.06 29.85 0.12 -4.35 16 15 C 0.01 0.51 3.33 29.85 0.10 0.61 16 16 C -0.53 -30.63 9.66 25.60 0.25 -30.39 16 17 H 0.05 2.97 7.99 -2.91 -0.02 2.95 16 18 C 0.01 0.89 5.47 84.65 0.46 1.35 16 19 N -0.94 -59.41 13.96 21.45 0.30 -59.11 16 20 Si 0.94 47.08 27.47 68.60 1.88 48.97 16 21 H -0.27 -13.14 7.11 99.48 0.71 -12.43 16 22 H -0.28 -13.43 7.11 99.48 0.71 -12.72 16 23 H -0.26 -12.99 6.54 99.48 0.65 -12.34 16 24 H 0.03 1.10 8.14 -2.39 -0.02 1.08 16 25 H 0.03 1.21 5.49 -2.38 -0.01 1.19 16 26 H 0.05 1.23 6.81 -2.39 -0.02 1.22 16 27 H 0.08 2.87 5.72 -18.78 -0.11 2.76 16 28 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 29 H 0.05 1.08 8.14 -2.39 -0.02 1.06 16 30 H 0.06 1.07 7.04 -2.38 -0.02 1.05 16 31 H 0.03 0.72 6.24 -2.39 -0.01 0.71 16 32 H 0.10 1.60 6.99 -2.39 -0.02 1.58 16 33 H 0.08 0.87 8.14 -2.39 -0.02 0.85 16 34 H 0.08 0.86 8.00 -2.39 -0.02 0.84 16 35 H 0.02 0.31 8.14 -2.38 -0.02 0.29 16 36 H 0.03 0.57 8.14 -2.38 -0.02 0.55 16 37 H 0.11 1.46 8.11 -2.39 -0.02 1.44 16 38 H 0.10 2.02 6.04 -2.39 -0.01 2.00 16 39 H 0.09 1.64 8.14 -2.38 -0.02 1.62 16 40 H 0.09 3.34 7.49 -2.39 -0.02 3.32 16 41 H 0.09 3.42 8.13 -2.38 -0.02 3.40 16 42 H 0.01 0.52 7.16 -2.39 -0.02 0.50 16 43 H 0.01 0.37 7.53 -2.39 -0.02 0.35 16 44 H 0.27 15.71 8.31 -92.71 -0.77 14.94 16 Total: -1.00 -69.66 327.70 1.55 -68.11 By element: Atomic # 1 Polarization: 8.35 SS G_CDS: 0.81 Total: 9.16 kcal Atomic # 6 Polarization: -16.37 SS G_CDS: 5.39 Total: -10.98 kcal Atomic # 7 Polarization: -85.91 SS G_CDS: -6.50 Total: -92.41 kcal Atomic # 8 Polarization: -22.82 SS G_CDS: -0.03 Total: -22.85 kcal Atomic # 14 Polarization: 47.08 SS G_CDS: 1.88 Total: 48.97 kcal Total: -69.66 1.55 -68.11 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000360244455.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.619 kcal (2) G-P(sol) polarization free energy of solvation -69.662 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.042 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.550 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.112 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.492 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds