Wall clock time and date at job start Mon Mar 30 2020 00:41:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53001 * 109.46834 * 2 1 4 4 C 1.53003 * 109.46769 * 119.99765 * 2 1 3 5 5 H 1.08997 * 109.62888 * 53.47553 * 4 2 1 6 6 C 1.53239 * 109.62801 * 293.09041 * 4 2 1 7 7 N 1.46900 * 109.34072 * 186.26808 * 6 4 2 8 8 C 1.46900 * 111.00285 * 187.25535 * 7 6 4 9 9 C 1.46899 * 111.26715 * 63.10416 * 7 6 4 10 10 C 1.53240 * 109.34242 * 296.89802 * 9 7 6 11 11 N 1.47075 * 108.68112 * 53.73278 * 10 9 7 12 12 C 1.34776 * 120.88076 * 128.91933 * 11 10 9 13 13 O 1.21281 * 119.99822 * 184.16293 * 12 11 10 14 14 C 1.50700 * 119.99927 * 4.15760 * 12 11 10 15 15 C 1.53005 * 109.47113 * 180.02562 * 14 12 11 16 16 C 1.50702 * 109.46894 * 180.02562 * 15 14 12 17 17 H 1.07994 * 119.99814 * 359.97438 * 16 15 14 18 18 C 1.37876 * 119.99474 * 179.97438 * 16 15 14 19 19 N 1.31514 * 119.99711 * 179.97438 * 18 16 15 20 20 Si 1.86798 * 120.00415 * 0.02562 * 18 16 15 21 21 H 1.48497 * 109.47451 * 89.99420 * 20 18 16 22 22 H 1.48500 * 109.47218 * 209.99876 * 20 18 16 23 23 H 1.48498 * 109.46956 * 329.99875 * 20 18 16 24 24 H 1.09002 * 109.47407 * 300.00138 * 1 2 3 25 25 H 1.09000 * 109.46985 * 60.00549 * 1 2 3 26 26 H 1.08999 * 109.47336 * 180.02562 * 1 2 3 27 27 H 1.08990 * 109.47025 * 239.99651 * 2 1 3 28 28 H 1.09000 * 109.46396 * 169.65540 * 3 2 1 29 29 H 1.08998 * 109.46608 * 289.64917 * 3 2 1 30 30 H 1.08988 * 109.47384 * 49.65444 * 3 2 1 31 31 H 1.09001 * 109.49568 * 66.30916 * 6 4 2 32 32 H 1.08998 * 109.49406 * 306.22505 * 6 4 2 33 33 H 1.08995 * 109.46948 * 291.74731 * 8 7 6 34 34 H 1.08997 * 109.47006 * 51.74473 * 8 7 6 35 35 H 1.08995 * 109.47185 * 171.74534 * 8 7 6 36 36 H 1.09005 * 109.48854 * 176.93793 * 9 7 6 37 37 H 1.08996 * 109.49119 * 56.85793 * 9 7 6 38 38 H 1.09001 * 109.62977 * 173.54324 * 10 9 7 39 39 H 1.09003 * 109.62287 * 293.92633 * 10 9 7 40 40 H 1.09000 * 109.47416 * 300.00637 * 14 12 11 41 41 H 1.09000 * 109.46661 * 60.00733 * 14 12 11 42 42 H 1.09003 * 109.46994 * 300.00033 * 15 14 12 43 43 H 1.09000 * 109.46764 * 60.00153 * 15 14 12 44 44 H 0.96994 * 120.00045 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 1 1.5859 -1.7101 1.3122 6 6 1.6778 0.0917 2.4968 7 7 2.2977 -0.5259 3.6768 8 6 1.8367 0.1205 4.9128 9 6 3.7636 -0.4992 3.5840 10 6 4.2112 -1.3363 2.3810 11 7 3.5037 -0.8569 1.1840 12 6 4.1787 -0.5459 0.0597 13 8 3.5889 -0.0808 -0.8926 14 6 5.6662 -0.7760 -0.0142 15 6 6.1818 -0.3417 -1.3877 16 6 7.6693 -0.5724 -1.4618 17 1 8.1942 -0.9869 -0.6139 18 6 8.3597 -0.2544 -2.6121 19 7 9.6578 -0.4552 -2.6766 20 14 7.4516 0.4631 -4.0784 21 1 7.4361 1.9444 -3.9747 22 1 8.1398 0.0617 -5.3316 23 1 6.0569 -0.0465 -4.0945 24 1 -0.3634 0.5139 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 -1.0276 0.0005 27 1 1.8933 -0.5138 -0.8899 28 1 3.1142 1.4480 0.1845 29 1 1.8352 1.9002 -0.9678 30 1 1.5339 2.0068 0.7831 31 1 0.5949 0.1056 2.6203 32 1 2.0447 1.1120 2.3853 33 1 2.2276 1.1369 4.9589 34 1 0.7471 0.1495 4.9229 35 1 2.1931 -0.4453 5.7735 36 1 4.1933 -0.9140 4.4958 37 1 4.1013 0.5293 3.4573 38 1 5.2865 -1.2276 2.2390 39 1 3.9690 -2.3849 2.5542 40 1 6.1631 -0.1928 0.7611 41 1 5.8779 -1.8347 0.1356 42 1 5.6850 -0.9247 -2.1633 43 1 5.9701 0.7170 -1.5372 44 1 10.1435 -0.2318 -3.4859 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000360244456.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:41:49 Heat of formation + Delta-G solvation = -12.778673 kcal Electronic energy + Delta-G solvation = -22071.000307 eV Core-core repulsion = 19024.149686 eV Total energy + Delta-G solvation = -3046.850621 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.70828 -37.96011 -35.61934 -34.40349 -33.36288 -31.18919 -29.98998 -28.49148 -27.02478 -26.24264 -24.27324 -24.17113 -21.66942 -20.98058 -19.69975 -18.39491 -17.01266 -16.13540 -15.98116 -15.66938 -15.44566 -15.04211 -14.83024 -14.21058 -13.94136 -13.48823 -13.46778 -13.28855 -12.95566 -12.56807 -12.42046 -12.22252 -12.14556 -11.95912 -11.75068 -11.50212 -11.28759 -11.20699 -11.01392 -10.63491 -10.48962 -10.48059 -10.06349 -9.96032 -9.73244 -9.17270 -8.71813 -8.53201 -8.50381 -8.20191 -6.02661 -4.01191 3.09226 3.16601 3.37782 3.44537 3.55174 3.72147 4.51100 4.65846 4.76947 4.84785 4.98755 5.09690 5.20154 5.22847 5.26240 5.33033 5.37694 5.40911 5.43307 5.52689 5.60272 5.61627 5.73002 5.78810 5.89991 5.91770 6.03965 6.06651 6.09637 6.20041 6.32801 6.50893 6.68477 6.68912 6.78281 6.79268 6.96177 7.37095 7.44705 7.70288 7.81670 8.50759 8.68225 9.00578 9.60596 11.10284 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.024780 B = 0.005196 C = 0.004493 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1129.677592 B = 5387.590326 C = 6230.215561 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.100 4.100 3 C -0.124 4.124 4 C 0.158 3.842 5 H 0.072 0.928 6 C 0.041 3.959 7 N -0.545 5.545 8 C 0.026 3.974 9 C 0.040 3.960 10 C 0.113 3.887 11 N -0.620 5.620 12 C 0.509 3.491 13 O -0.523 6.523 14 C -0.123 4.123 15 C 0.003 3.997 16 C -0.524 4.524 17 H 0.072 0.928 18 C 0.069 3.931 19 N -0.904 5.904 20 Si 0.877 3.123 21 H -0.277 1.277 22 H -0.289 1.289 23 H -0.261 1.261 24 H 0.047 0.953 25 H 0.055 0.945 26 H 0.051 0.949 27 H 0.117 0.883 28 H 0.063 0.937 29 H 0.049 0.951 30 H 0.029 0.971 31 H 0.082 0.918 32 H 0.045 0.955 33 H 0.024 0.976 34 H 0.066 0.934 35 H 0.069 0.931 36 H 0.086 0.914 37 H 0.039 0.961 38 H 0.096 0.904 39 H 0.073 0.927 40 H 0.082 0.918 41 H 0.084 0.916 42 H 0.023 0.977 43 H 0.018 0.982 44 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.467 0.156 14.059 22.422 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.119 4.119 3 C -0.181 4.181 4 C 0.055 3.945 5 H 0.090 0.910 6 C -0.087 4.087 7 N -0.269 5.269 8 C -0.122 4.122 9 C -0.089 4.089 10 C -0.011 4.011 11 N -0.355 5.355 12 C 0.300 3.700 13 O -0.400 6.400 14 C -0.162 4.162 15 C -0.035 4.035 16 C -0.562 4.562 17 H 0.090 0.910 18 C -0.132 4.132 19 N -0.543 5.543 20 Si 0.704 3.296 21 H -0.203 1.203 22 H -0.215 1.215 23 H -0.185 1.185 24 H 0.066 0.934 25 H 0.074 0.926 26 H 0.070 0.930 27 H 0.135 0.865 28 H 0.081 0.919 29 H 0.068 0.932 30 H 0.048 0.952 31 H 0.100 0.900 32 H 0.063 0.937 33 H 0.043 0.957 34 H 0.085 0.915 35 H 0.088 0.912 36 H 0.104 0.896 37 H 0.058 0.942 38 H 0.114 0.886 39 H 0.092 0.908 40 H 0.100 0.900 41 H 0.103 0.897 42 H 0.042 0.958 43 H 0.036 0.964 44 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -17.756 -0.064 13.436 22.267 hybrid contribution -0.071 1.230 -0.551 1.350 sum -17.827 1.165 12.884 22.027 Atomic orbital electron populations 1.21986 0.96406 1.01175 1.01312 1.21803 0.93546 0.97821 0.98707 1.21887 1.01427 0.94766 1.00018 1.21330 0.80264 0.98617 0.94338 0.90983 1.22698 0.99488 0.96747 0.89808 1.61933 1.07050 1.55507 1.02433 1.22350 1.00786 0.96888 0.92198 1.22520 0.87810 0.99455 0.99105 1.21793 0.97650 0.98163 0.83493 1.48305 1.06672 1.67404 1.13146 1.21393 0.90859 0.76348 0.81420 1.90636 1.68947 1.42977 1.37402 1.21719 0.88853 1.02800 1.02867 1.19358 0.96365 0.96766 0.90962 1.21116 0.90894 1.42886 1.01306 0.91014 1.24966 0.94663 0.95031 0.98542 1.69910 1.07175 1.48832 1.28391 0.86797 0.80864 0.79788 0.82107 1.20321 1.21487 1.18506 0.93414 0.92603 0.93037 0.86543 0.91863 0.93213 0.95177 0.90005 0.93720 0.95699 0.91488 0.91250 0.89566 0.94225 0.88565 0.90849 0.90019 0.89744 0.95836 0.96383 0.92742 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.66 8.97 37.16 0.33 -1.33 16 2 C -0.10 -1.39 2.16 -90.62 -0.20 -1.58 16 3 C -0.12 -1.85 7.02 37.16 0.26 -1.59 16 4 C 0.16 2.04 2.79 -67.45 -0.19 1.86 16 5 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 6 C 0.04 0.46 4.22 -3.70 -0.02 0.44 16 7 N -0.54 -5.66 4.88 -242.61 -1.18 -6.85 16 8 C 0.03 0.21 9.62 60.06 0.58 0.79 16 9 C 0.04 0.41 5.62 -3.70 -0.02 0.39 16 10 C 0.11 1.30 6.48 -3.60 -0.02 1.27 16 11 N -0.62 -8.85 2.93 -164.87 -0.48 -9.34 16 12 C 0.51 9.09 6.53 -10.99 -0.07 9.02 16 13 O -0.52 -10.60 9.75 5.56 0.05 -10.54 16 14 C -0.12 -2.36 4.06 -27.88 -0.11 -2.48 16 15 C 0.00 0.08 3.33 -27.88 -0.09 -0.01 16 16 C -0.52 -14.92 9.66 -34.44 -0.33 -15.26 16 17 H 0.07 2.14 7.99 -52.49 -0.42 1.72 16 18 C 0.07 2.05 5.47 -17.82 -0.10 1.95 16 19 N -0.90 -28.02 13.96 55.43 0.77 -27.25 16 20 Si 0.88 22.57 27.47 -169.99 -4.67 17.90 16 21 H -0.28 -7.04 7.11 56.52 0.40 -6.64 16 22 H -0.29 -7.30 7.11 56.52 0.40 -6.89 16 23 H -0.26 -6.66 6.54 56.52 0.37 -6.29 16 24 H 0.05 0.46 6.79 -51.93 -0.35 0.11 16 25 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 26 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 27 H 0.12 1.98 5.75 -52.70 -0.30 1.68 16 28 H 0.06 1.10 5.44 -51.93 -0.28 0.82 16 29 H 0.05 0.77 8.14 -51.93 -0.42 0.34 16 30 H 0.03 0.39 6.82 -51.94 -0.35 0.03 16 31 H 0.08 0.81 6.82 -51.93 -0.35 0.46 16 32 H 0.04 0.55 6.22 -51.93 -0.32 0.23 16 33 H 0.02 0.21 8.14 -51.93 -0.42 -0.22 16 34 H 0.07 0.49 8.00 -51.93 -0.42 0.08 16 35 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 36 H 0.09 0.72 8.11 -51.93 -0.42 0.30 16 37 H 0.04 0.44 8.14 -51.93 -0.42 0.02 16 38 H 0.10 1.08 6.04 -51.93 -0.31 0.77 16 39 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 40 H 0.08 1.47 7.49 -51.93 -0.39 1.08 16 41 H 0.08 1.53 8.13 -51.93 -0.42 1.11 16 42 H 0.02 0.60 7.16 -51.93 -0.37 0.23 16 43 H 0.02 0.46 7.53 -51.93 -0.39 0.07 16 44 H 0.26 7.65 8.31 -40.82 -0.34 7.31 16 LS Contribution 327.40 15.07 4.93 4.93 Total: -1.00 -31.92 327.40 -8.22 -40.14 By element: Atomic # 1 Polarization: 5.19 SS G_CDS: -7.66 Total: -2.47 kcal Atomic # 6 Polarization: -6.55 SS G_CDS: 0.02 Total: -6.53 kcal Atomic # 7 Polarization: -42.53 SS G_CDS: -0.89 Total: -43.43 kcal Atomic # 8 Polarization: -10.60 SS G_CDS: 0.05 Total: -10.54 kcal Atomic # 14 Polarization: 22.57 SS G_CDS: -4.67 Total: 17.90 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -31.92 -8.22 -40.14 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000360244456.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.358 kcal (2) G-P(sol) polarization free energy of solvation -31.920 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.562 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.217 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.137 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.779 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds