Wall clock time and date at job start Mon Mar 30 2020 00:41:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53001 * 109.46834 * 2 1 4 4 C 1.53003 * 109.46769 * 119.99765 * 2 1 3 5 5 H 1.08997 * 109.62888 * 53.47553 * 4 2 1 6 6 C 1.53239 * 109.62801 * 293.09041 * 4 2 1 7 7 N 1.46900 * 109.34072 * 186.26808 * 6 4 2 8 8 C 1.46900 * 111.00285 * 187.25535 * 7 6 4 9 9 C 1.46899 * 111.26715 * 63.10416 * 7 6 4 10 10 C 1.53240 * 109.34242 * 296.89802 * 9 7 6 11 11 N 1.47075 * 108.68112 * 53.73278 * 10 9 7 12 12 C 1.34776 * 120.88076 * 128.91933 * 11 10 9 13 13 O 1.21281 * 119.99822 * 184.16293 * 12 11 10 14 14 C 1.50700 * 119.99927 * 4.15760 * 12 11 10 15 15 C 1.53005 * 109.47113 * 180.02562 * 14 12 11 16 16 C 1.50702 * 109.46894 * 180.02562 * 15 14 12 17 17 H 1.07994 * 119.99814 * 359.97438 * 16 15 14 18 18 C 1.37876 * 119.99474 * 179.97438 * 16 15 14 19 19 N 1.31514 * 119.99711 * 179.97438 * 18 16 15 20 20 Si 1.86798 * 120.00415 * 0.02562 * 18 16 15 21 21 H 1.48497 * 109.47451 * 89.99420 * 20 18 16 22 22 H 1.48500 * 109.47218 * 209.99876 * 20 18 16 23 23 H 1.48498 * 109.46956 * 329.99875 * 20 18 16 24 24 H 1.09002 * 109.47407 * 300.00138 * 1 2 3 25 25 H 1.09000 * 109.46985 * 60.00549 * 1 2 3 26 26 H 1.08999 * 109.47336 * 180.02562 * 1 2 3 27 27 H 1.08990 * 109.47025 * 239.99651 * 2 1 3 28 28 H 1.09000 * 109.46396 * 169.65540 * 3 2 1 29 29 H 1.08998 * 109.46608 * 289.64917 * 3 2 1 30 30 H 1.08988 * 109.47384 * 49.65444 * 3 2 1 31 31 H 1.09001 * 109.49568 * 66.30916 * 6 4 2 32 32 H 1.08998 * 109.49406 * 306.22505 * 6 4 2 33 33 H 1.08995 * 109.46948 * 291.74731 * 8 7 6 34 34 H 1.08997 * 109.47006 * 51.74473 * 8 7 6 35 35 H 1.08995 * 109.47185 * 171.74534 * 8 7 6 36 36 H 1.09005 * 109.48854 * 176.93793 * 9 7 6 37 37 H 1.08996 * 109.49119 * 56.85793 * 9 7 6 38 38 H 1.09001 * 109.62977 * 173.54324 * 10 9 7 39 39 H 1.09003 * 109.62287 * 293.92633 * 10 9 7 40 40 H 1.09000 * 109.47416 * 300.00637 * 14 12 11 41 41 H 1.09000 * 109.46661 * 60.00733 * 14 12 11 42 42 H 1.09003 * 109.46994 * 300.00033 * 15 14 12 43 43 H 1.09000 * 109.46764 * 60.00153 * 15 14 12 44 44 H 0.96994 * 120.00045 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 1 1.5859 -1.7101 1.3122 6 6 1.6778 0.0917 2.4968 7 7 2.2977 -0.5259 3.6768 8 6 1.8367 0.1205 4.9128 9 6 3.7636 -0.4992 3.5840 10 6 4.2112 -1.3363 2.3810 11 7 3.5037 -0.8569 1.1840 12 6 4.1787 -0.5459 0.0597 13 8 3.5889 -0.0808 -0.8926 14 6 5.6662 -0.7760 -0.0142 15 6 6.1818 -0.3417 -1.3877 16 6 7.6693 -0.5724 -1.4618 17 1 8.1942 -0.9869 -0.6139 18 6 8.3597 -0.2544 -2.6121 19 7 9.6578 -0.4552 -2.6766 20 14 7.4516 0.4631 -4.0784 21 1 7.4361 1.9444 -3.9747 22 1 8.1398 0.0617 -5.3316 23 1 6.0569 -0.0465 -4.0945 24 1 -0.3634 0.5139 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 -1.0276 0.0005 27 1 1.8933 -0.5138 -0.8899 28 1 3.1142 1.4480 0.1845 29 1 1.8352 1.9002 -0.9678 30 1 1.5339 2.0068 0.7831 31 1 0.5949 0.1056 2.6203 32 1 2.0447 1.1120 2.3853 33 1 2.2276 1.1369 4.9589 34 1 0.7471 0.1495 4.9229 35 1 2.1931 -0.4453 5.7735 36 1 4.1933 -0.9140 4.4958 37 1 4.1013 0.5293 3.4573 38 1 5.2865 -1.2276 2.2390 39 1 3.9690 -2.3849 2.5542 40 1 6.1631 -0.1928 0.7611 41 1 5.8779 -1.8347 0.1356 42 1 5.6850 -0.9247 -2.1633 43 1 5.9701 0.7170 -1.5372 44 1 10.1435 -0.2318 -3.4859 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000360244456.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:41:49 Heat of formation + Delta-G solvation = -34.147182 kcal Electronic energy + Delta-G solvation = -22071.926915 eV Core-core repulsion = 19024.149686 eV Total energy + Delta-G solvation = -3047.777229 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.88955 -39.05857 -36.73230 -35.53923 -35.34243 -33.15637 -30.92471 -29.52179 -28.18442 -27.82710 -25.36017 -25.10001 -23.25581 -22.10849 -21.01946 -19.75856 -18.88694 -17.49974 -17.05015 -16.96746 -16.51257 -16.29017 -15.88727 -15.65035 -15.23720 -14.92395 -14.79185 -14.50546 -14.35149 -14.02240 -13.59060 -13.37328 -13.14399 -13.03493 -12.92698 -12.82375 -12.67466 -12.26320 -12.10830 -12.06106 -11.96927 -11.83385 -11.66370 -11.54997 -11.49642 -11.34015 -10.78355 -9.88272 -9.66072 -9.20741 -8.31858 -6.34461 1.32127 1.34246 1.49201 1.71437 2.02272 2.34328 2.92374 3.04099 3.58819 3.86321 3.92917 4.08592 4.13360 4.22412 4.28488 4.30452 4.37620 4.43949 4.47132 4.59612 4.65068 4.69210 4.78203 4.78497 4.80238 4.88203 5.00095 5.02548 5.04299 5.05537 5.14445 5.30510 5.33212 5.44002 5.45134 5.51205 5.61125 5.80376 6.01544 6.02745 6.23758 6.48668 6.72062 7.30869 7.32954 8.83982 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.024780 B = 0.005196 C = 0.004493 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1129.677592 B = 5387.590326 C = 6230.215561 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.098 4.098 3 C -0.116 4.116 4 C 0.157 3.843 5 H 0.080 0.920 6 C 0.049 3.951 7 N -0.550 5.550 8 C 0.026 3.974 9 C 0.044 3.956 10 C 0.106 3.894 11 N -0.612 5.612 12 C 0.509 3.491 13 O -0.553 6.553 14 C -0.116 4.116 15 C 0.010 3.990 16 C -0.528 4.528 17 H 0.049 0.951 18 C 0.015 3.985 19 N -0.944 5.944 20 Si 0.938 3.062 21 H -0.270 1.270 22 H -0.279 1.279 23 H -0.261 1.261 24 H 0.066 0.934 25 H 0.053 0.947 26 H 0.061 0.939 27 H 0.082 0.918 28 H 0.034 0.966 29 H 0.035 0.965 30 H 0.050 0.950 31 H 0.101 0.899 32 H 0.032 0.968 33 H 0.022 0.978 34 H 0.077 0.923 35 H 0.082 0.918 36 H 0.110 0.890 37 H 0.028 0.972 38 H 0.096 0.904 39 H 0.087 0.913 40 H 0.093 0.907 41 H 0.095 0.905 42 H 0.010 0.990 43 H 0.007 0.993 44 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.618 0.106 15.642 25.090 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.117 4.117 3 C -0.173 4.173 4 C 0.054 3.946 5 H 0.097 0.903 6 C -0.079 4.079 7 N -0.274 5.274 8 C -0.122 4.122 9 C -0.085 4.085 10 C -0.017 4.017 11 N -0.346 5.346 12 C 0.299 3.701 13 O -0.432 6.432 14 C -0.155 4.155 15 C -0.028 4.028 16 C -0.566 4.566 17 H 0.067 0.933 18 C -0.183 4.183 19 N -0.585 5.585 20 Si 0.763 3.237 21 H -0.195 1.195 22 H -0.204 1.204 23 H -0.185 1.185 24 H 0.085 0.915 25 H 0.072 0.928 26 H 0.080 0.920 27 H 0.100 0.900 28 H 0.053 0.947 29 H 0.054 0.946 30 H 0.069 0.931 31 H 0.119 0.881 32 H 0.050 0.950 33 H 0.041 0.959 34 H 0.096 0.904 35 H 0.101 0.899 36 H 0.128 0.872 37 H 0.046 0.954 38 H 0.115 0.885 39 H 0.106 0.894 40 H 0.111 0.889 41 H 0.113 0.887 42 H 0.028 0.972 43 H 0.026 0.974 44 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -19.921 -0.126 15.068 24.978 hybrid contribution 0.621 1.202 -0.948 1.652 sum -19.301 1.076 14.120 23.938 Atomic orbital electron populations 1.21904 0.93869 1.02172 1.02149 1.21633 0.95611 0.96654 0.97810 1.21781 0.99799 0.95889 0.99841 1.21446 0.79046 0.99226 0.94914 0.90256 1.22599 1.00590 0.95488 0.89267 1.61965 1.06885 1.55714 1.02880 1.22417 1.01530 0.96797 0.91421 1.22512 0.88091 0.98608 0.99286 1.22039 0.97590 0.99194 0.82868 1.48276 1.07558 1.66036 1.12772 1.21001 0.90152 0.76728 0.82219 1.90658 1.69231 1.44555 1.38799 1.21523 0.90521 1.03506 0.99987 1.19179 0.93873 0.95877 0.93844 1.21432 0.92801 1.41885 1.00477 0.93316 1.25781 0.95376 0.95645 1.01471 1.70022 1.08644 1.50326 1.29482 0.85834 0.79518 0.79303 0.79079 1.19509 1.20400 1.18508 0.91547 0.92793 0.91970 0.89994 0.94670 0.94614 0.93144 0.88104 0.95001 0.95902 0.90377 0.89929 0.87169 0.95399 0.88528 0.89442 0.88863 0.88677 0.97185 0.97449 0.92401 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.84 8.97 71.98 0.65 -2.19 16 2 C -0.10 -2.64 2.16 -10.79 -0.02 -2.66 16 3 C -0.12 -3.42 7.02 71.98 0.51 -2.92 16 4 C 0.16 3.77 2.79 44.95 0.13 3.90 16 5 H 0.08 1.84 8.14 -2.39 -0.02 1.82 16 6 C 0.05 0.96 4.22 86.38 0.36 1.33 16 7 N -0.55 -9.69 4.88 -921.49 -4.50 -14.19 16 8 C 0.03 0.34 9.62 127.69 1.23 1.56 16 9 C 0.04 0.78 5.62 86.38 0.49 1.26 16 10 C 0.11 2.22 6.48 86.35 0.56 2.78 16 11 N -0.61 -16.82 2.93 -793.93 -2.32 -19.14 16 12 C 0.51 18.18 6.53 87.66 0.57 18.75 16 13 O -0.55 -22.86 9.75 -3.03 -0.03 -22.89 16 14 C -0.12 -4.47 4.06 29.85 0.12 -4.34 16 15 C 0.01 0.51 3.33 29.85 0.10 0.61 16 16 C -0.53 -30.64 9.66 25.60 0.25 -30.39 16 17 H 0.05 2.98 7.99 -2.91 -0.02 2.95 16 18 C 0.01 0.89 5.47 84.65 0.46 1.35 16 19 N -0.94 -59.41 13.96 21.45 0.30 -59.11 16 20 Si 0.94 47.09 27.47 68.60 1.88 48.97 16 21 H -0.27 -13.14 7.11 99.48 0.71 -12.43 16 22 H -0.28 -13.43 7.11 99.48 0.71 -12.72 16 23 H -0.26 -13.00 6.54 99.48 0.65 -12.35 16 24 H 0.07 1.07 6.79 -2.39 -0.02 1.06 16 25 H 0.05 1.09 8.14 -2.39 -0.02 1.07 16 26 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 27 H 0.08 2.83 5.75 -14.52 -0.08 2.74 16 28 H 0.03 1.22 5.44 -2.39 -0.01 1.21 16 29 H 0.03 1.11 8.14 -2.39 -0.02 1.09 16 30 H 0.05 1.24 6.82 -2.39 -0.02 1.22 16 31 H 0.10 1.61 6.82 -2.39 -0.02 1.59 16 32 H 0.03 0.72 6.22 -2.39 -0.01 0.70 16 33 H 0.02 0.31 8.14 -2.39 -0.02 0.29 16 34 H 0.08 0.85 8.00 -2.39 -0.02 0.83 16 35 H 0.08 0.87 8.14 -2.39 -0.02 0.85 16 36 H 0.11 1.46 8.11 -2.38 -0.02 1.44 16 37 H 0.03 0.57 8.14 -2.39 -0.02 0.55 16 38 H 0.10 2.02 6.04 -2.39 -0.01 2.01 16 39 H 0.09 1.64 8.14 -2.39 -0.02 1.62 16 40 H 0.09 3.34 7.49 -2.39 -0.02 3.33 16 41 H 0.09 3.43 8.13 -2.39 -0.02 3.41 16 42 H 0.01 0.51 7.16 -2.39 -0.02 0.50 16 43 H 0.01 0.37 7.53 -2.39 -0.02 0.35 16 44 H 0.27 15.71 8.31 -92.71 -0.77 14.94 16 Total: -1.00 -69.72 327.40 1.56 -68.16 By element: Atomic # 1 Polarization: 8.34 SS G_CDS: 0.83 Total: 9.17 kcal Atomic # 6 Polarization: -16.36 SS G_CDS: 5.39 Total: -10.97 kcal Atomic # 7 Polarization: -85.92 SS G_CDS: -6.52 Total: -92.44 kcal Atomic # 8 Polarization: -22.86 SS G_CDS: -0.03 Total: -22.89 kcal Atomic # 14 Polarization: 47.09 SS G_CDS: 1.88 Total: 48.97 kcal Total: -69.72 1.56 -68.16 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000360244456.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.014 kcal (2) G-P(sol) polarization free energy of solvation -69.717 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.703 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.555 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.162 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.147 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds