Wall clock time and date at job start Mon Mar 30 2020 01:03:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52995 * 109.47278 * 2 1 4 4 C 1.53000 * 109.46802 * 119.99887 * 2 1 3 5 5 N 1.46505 * 109.46928 * 176.25217 * 4 2 1 6 6 C 1.46494 * 120.00392 * 275.18428 * 5 4 2 7 7 C 1.50698 * 109.47301 * 265.13960 * 6 5 4 8 8 H 1.08007 * 119.99921 * 359.97438 * 7 6 5 9 9 C 1.37883 * 120.00266 * 179.97438 * 7 6 5 10 10 N 1.31510 * 119.99812 * 359.97438 * 9 7 6 11 11 Si 1.86797 * 120.00114 * 179.97438 * 9 7 6 12 12 H 1.48499 * 109.47211 * 59.99841 * 11 9 7 13 13 H 1.48500 * 109.47216 * 180.02562 * 11 9 7 14 14 H 1.48503 * 109.46940 * 299.99975 * 11 9 7 15 15 C 1.34773 * 119.99767 * 95.18511 * 5 4 2 16 16 O 1.21279 * 120.00332 * 3.55540 * 15 5 4 17 17 C 1.50709 * 120.00066 * 183.55308 * 15 5 4 18 18 H 1.09004 * 110.87169 * 311.36783 * 17 15 5 19 19 C 1.55140 * 110.98967 * 187.51974 * 17 15 5 20 20 C 1.54317 * 103.01554 * 206.21521 * 19 17 15 21 21 N 1.47438 * 107.23434 * 22.28972 * 20 19 17 22 22 C 1.46899 * 111.00076 * 123.25386 * 21 20 19 23 23 C 1.47849 * 108.56753 * 0.98607 * 21 20 19 24 24 H 1.08998 * 109.47327 * 300.00099 * 1 2 3 25 25 H 1.09002 * 109.46887 * 60.00563 * 1 2 3 26 26 H 1.09004 * 109.47257 * 180.02562 * 1 2 3 27 27 H 1.08998 * 109.46982 * 239.99481 * 2 1 3 28 28 H 1.09003 * 109.47372 * 185.28522 * 3 2 1 29 29 H 1.09002 * 109.47192 * 305.27991 * 3 2 1 30 30 H 1.08997 * 109.47269 * 65.28435 * 3 2 1 31 31 H 1.09005 * 109.47177 * 56.25520 * 4 2 1 32 32 H 1.08996 * 109.47347 * 296.25197 * 4 2 1 33 33 H 1.09004 * 109.46874 * 25.13311 * 6 5 4 34 34 H 1.08999 * 109.47645 * 145.13587 * 6 5 4 35 35 H 0.97000 * 120.00092 * 180.02562 * 10 9 7 36 36 H 1.09001 * 110.70060 * 87.83835 * 19 17 15 37 37 H 1.08995 * 110.71020 * 324.60434 * 19 17 15 38 38 H 1.08996 * 109.89447 * 262.87845 * 20 19 17 39 39 H 1.09003 * 110.02037 * 141.76687 * 20 19 17 40 40 H 1.09003 * 109.47139 * 59.87799 * 22 21 20 41 41 H 1.09008 * 109.47276 * 179.87121 * 22 21 20 42 42 H 1.09001 * 109.47357 * 299.87336 * 22 21 20 43 43 H 1.08995 * 110.37254 * 94.73633 * 23 21 20 44 44 H 1.09003 * 110.36970 * 217.07346 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0399 -0.7212 1.2493 5 7 3.5022 -0.7999 1.2050 6 6 4.1554 -1.8898 0.4759 7 6 4.4802 -3.0093 1.4309 8 1 4.2259 -2.9180 2.4766 9 6 5.1021 -4.1503 0.9698 10 7 5.4113 -4.2617 -0.3036 11 14 5.5053 -5.5377 2.1537 12 1 4.2528 -6.0380 2.7751 13 1 6.1674 -6.6425 1.4146 14 1 6.4169 -5.0354 3.2129 15 6 4.2464 0.1303 1.8352 16 8 3.7071 0.9953 2.4923 17 6 5.7490 0.0957 1.7233 18 1 6.1301 -0.9062 1.9208 19 6 6.4009 1.1356 2.6723 20 6 7.7445 1.4445 1.9789 21 7 7.5928 1.0914 0.5555 22 6 7.8869 2.2436 -0.3070 23 6 6.2146 0.6032 0.3358 24 1 -0.3634 0.5138 0.8899 25 1 -0.3633 0.5138 -0.8901 26 1 -0.3634 -1.0277 0.0005 27 1 1.8933 -0.5139 -0.8899 28 1 3.1259 1.4439 -0.0947 29 1 1.6015 1.9829 -0.8389 30 1 1.7561 1.9282 0.9335 31 1 1.6228 -1.7277 1.2835 32 1 1.7325 -0.1701 2.1380 33 1 3.4868 -2.2584 -0.3021 34 1 5.0750 -1.5224 0.0205 35 1 5.8485 -5.0645 -0.6281 36 1 6.5669 0.7051 3.6598 37 1 5.7869 2.0335 2.7404 38 1 8.5388 0.8473 2.4265 39 1 7.9789 2.5047 2.0749 40 1 8.9110 2.5746 -0.1344 41 1 7.7696 1.9549 -1.3516 42 1 7.1983 3.0561 -0.0751 43 1 5.5740 1.4162 -0.0056 44 1 6.2118 -0.2126 -0.3872 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000386202117.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:03:36 Heat of formation + Delta-G solvation = -47.189335 kcal Electronic energy + Delta-G solvation = -22189.341612 eV Core-core repulsion = 19140.998833 eV Total energy + Delta-G solvation = -3048.342779 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -39.80726 -37.90318 -35.86464 -34.11553 -32.28406 -31.72423 -28.95277 -27.43992 -26.81690 -26.02217 -25.10026 -23.07734 -21.52495 -20.62498 -19.66400 -18.11803 -16.84798 -16.34713 -15.71605 -15.52119 -14.73747 -14.55952 -14.20304 -14.12860 -13.82009 -13.23356 -13.09775 -12.82485 -12.72771 -12.31891 -12.15290 -11.93082 -11.64978 -11.50777 -11.38744 -11.11933 -11.02126 -10.99526 -10.86810 -10.76725 -10.55825 -10.53797 -10.34591 -10.25958 -10.02159 -9.70479 -9.01278 -8.53117 -8.08703 -7.65482 -6.16055 -4.23359 3.26034 3.31084 3.32242 3.40554 3.87894 4.30668 4.38892 4.92645 5.04623 5.16962 5.23141 5.28679 5.29564 5.42288 5.49895 5.58317 5.60843 5.76565 5.85950 5.87803 5.91468 5.95422 5.99353 6.05799 6.13647 6.17698 6.28278 6.31476 6.34502 6.39187 6.44108 6.62157 6.68793 6.75090 6.84127 7.11782 7.25726 7.27026 7.58428 7.78921 8.08731 8.36573 8.81275 9.05397 9.44439 10.90413 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.011062 B = 0.008879 C = 0.005789 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2530.567874 B = 3152.884981 C = 4835.455655 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.112 4.112 3 C -0.135 4.135 4 C 0.122 3.878 5 N -0.592 5.592 6 C 0.234 3.766 7 C -0.540 4.540 8 H 0.059 0.941 9 C 0.067 3.933 10 N -0.889 5.889 11 Si 0.895 3.105 12 H -0.277 1.277 13 H -0.286 1.286 14 H -0.275 1.275 15 C 0.529 3.471 16 O -0.574 6.574 17 C -0.115 4.115 18 H 0.122 0.878 19 C -0.124 4.124 20 C 0.042 3.958 21 N -0.531 5.531 22 C 0.021 3.979 23 C 0.059 3.941 24 H 0.052 0.948 25 H 0.051 0.949 26 H 0.054 0.946 27 H 0.071 0.929 28 H 0.048 0.952 29 H 0.042 0.958 30 H 0.056 0.944 31 H 0.073 0.927 32 H 0.074 0.926 33 H 0.035 0.965 34 H 0.043 0.957 35 H 0.266 0.734 36 H 0.074 0.926 37 H 0.077 0.923 38 H 0.077 0.923 39 H 0.051 0.949 40 H 0.065 0.935 41 H 0.067 0.933 42 H 0.024 0.976 43 H 0.042 0.958 44 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.785 9.694 -0.362 9.733 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.132 4.132 3 C -0.192 4.192 4 C -0.002 4.002 5 N -0.321 5.321 6 C 0.115 3.885 7 C -0.579 4.579 8 H 0.077 0.923 9 C -0.136 4.136 10 N -0.527 5.527 11 Si 0.723 3.277 12 H -0.202 1.202 13 H -0.211 1.211 14 H -0.201 1.201 15 C 0.317 3.683 16 O -0.456 6.456 17 C -0.136 4.136 18 H 0.140 0.860 19 C -0.163 4.163 20 C -0.086 4.086 21 N -0.255 5.255 22 C -0.127 4.127 23 C -0.068 4.068 24 H 0.071 0.929 25 H 0.070 0.930 26 H 0.074 0.926 27 H 0.089 0.911 28 H 0.067 0.933 29 H 0.062 0.938 30 H 0.075 0.925 31 H 0.092 0.908 32 H 0.092 0.908 33 H 0.053 0.947 34 H 0.061 0.939 35 H 0.075 0.925 36 H 0.093 0.907 37 H 0.096 0.904 38 H 0.095 0.905 39 H 0.070 0.930 40 H 0.084 0.916 41 H 0.086 0.914 42 H 0.042 0.958 43 H 0.060 0.940 44 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -0.614 9.601 -0.324 9.626 hybrid contribution -0.263 -0.415 0.673 0.833 sum -0.877 9.187 0.349 9.235 Atomic orbital electron populations 1.21746 0.95259 1.01569 1.01323 1.21499 0.95282 0.96818 0.99577 1.21732 1.00797 0.95719 1.00956 1.21376 0.81093 1.00395 0.97325 1.48170 1.05546 1.26931 1.51448 1.19516 0.93548 0.83547 0.91921 1.21449 1.39868 1.01195 0.95342 0.92290 1.24915 0.95244 0.98251 0.95192 1.69901 1.40855 1.28537 1.13365 0.86597 0.78693 0.81461 0.80970 1.20237 1.21138 1.20061 1.20111 0.88912 0.80744 0.78504 1.90561 1.74093 1.38235 1.42681 1.22400 0.92738 1.02577 0.95914 0.85958 1.22657 0.95434 0.99426 0.98776 1.22852 0.98019 0.99332 0.88369 1.63602 1.25419 1.31729 1.04742 1.22523 1.00519 0.91640 0.98051 1.23022 0.87482 0.99451 0.96892 0.92869 0.92978 0.92645 0.91052 0.93256 0.93845 0.92487 0.90834 0.90799 0.94708 0.93897 0.92466 0.90744 0.90447 0.90508 0.93017 0.91620 0.91432 0.95787 0.93974 0.88615 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.83 9.19 37.16 0.34 -1.49 16 2 C -0.11 -1.77 3.13 -90.62 -0.28 -2.06 16 3 C -0.13 -2.13 8.08 37.15 0.30 -1.83 16 4 C 0.12 2.24 4.96 -4.04 -0.02 2.22 16 5 N -0.59 -12.26 2.26 -175.06 -0.39 -12.66 16 6 C 0.23 5.46 4.86 -5.20 -0.03 5.43 16 7 C -0.54 -13.94 8.74 -34.44 -0.30 -14.24 16 8 H 0.06 1.56 7.81 -52.48 -0.41 1.15 16 9 C 0.07 1.77 5.46 -17.82 -0.10 1.68 16 10 N -0.89 -24.29 13.29 55.43 0.74 -23.55 16 11 Si 0.90 20.63 29.54 -169.99 -5.02 15.61 16 12 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 13 H -0.29 -6.54 7.11 56.52 0.40 -6.13 16 14 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 15 C 0.53 10.92 5.58 -10.98 -0.06 10.86 16 16 O -0.57 -12.61 14.34 5.56 0.08 -12.53 16 17 C -0.11 -2.17 2.40 -89.63 -0.22 -2.38 16 18 H 0.12 2.59 7.15 -51.93 -0.37 2.22 16 19 C -0.12 -2.03 6.14 -24.91 -0.15 -2.18 16 20 C 0.04 0.61 6.90 -2.84 -0.02 0.59 16 21 N -0.53 -8.39 5.44 -239.52 -1.30 -9.69 16 22 C 0.02 0.27 9.12 60.06 0.55 0.82 16 23 C 0.06 1.03 5.74 -2.30 -0.01 1.02 16 24 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 25 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 26 H 0.05 0.69 8.14 -51.93 -0.42 0.26 16 27 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 28 H 0.05 0.86 6.95 -51.93 -0.36 0.50 16 29 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 30 H 0.06 0.94 7.99 -51.93 -0.42 0.53 16 31 H 0.07 1.36 8.11 -51.93 -0.42 0.94 16 32 H 0.07 1.39 7.23 -51.93 -0.38 1.02 16 33 H 0.03 0.86 8.04 -51.93 -0.42 0.44 16 34 H 0.04 1.03 4.89 -51.93 -0.25 0.77 16 35 H 0.27 6.96 8.31 -40.82 -0.34 6.62 16 36 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 37 H 0.08 1.32 7.29 -51.93 -0.38 0.94 16 38 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 39 H 0.05 0.65 7.58 -51.93 -0.39 0.26 16 40 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 41 H 0.07 0.83 8.14 -51.92 -0.42 0.40 16 42 H 0.02 0.30 8.10 -51.93 -0.42 -0.12 16 43 H 0.04 0.72 7.67 -51.93 -0.40 0.32 16 44 H 0.10 1.81 6.40 -51.93 -0.33 1.48 16 LS Contribution 343.31 15.07 5.17 5.17 Total: -1.00 -27.81 343.31 -8.62 -36.43 By element: Atomic # 1 Polarization: 10.68 SS G_CDS: -7.89 Total: 2.79 kcal Atomic # 6 Polarization: -1.56 SS G_CDS: 0.00 Total: -1.56 kcal Atomic # 7 Polarization: -44.94 SS G_CDS: -0.96 Total: -45.91 kcal Atomic # 8 Polarization: -12.61 SS G_CDS: 0.08 Total: -12.53 kcal Atomic # 14 Polarization: 20.63 SS G_CDS: -5.02 Total: 15.61 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -27.81 -8.62 -36.43 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000386202117.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.763 kcal (2) G-P(sol) polarization free energy of solvation -27.808 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.570 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.619 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.427 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.189 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds