Wall clock time and date at job start Mon Mar 30 2020 01:03:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52995 * 109.47278 * 2 1 4 4 C 1.53000 * 109.46802 * 119.99887 * 2 1 3 5 5 N 1.46505 * 109.46928 * 176.25217 * 4 2 1 6 6 C 1.46494 * 120.00392 * 275.18428 * 5 4 2 7 7 C 1.50698 * 109.47301 * 265.13960 * 6 5 4 8 8 H 1.08007 * 119.99921 * 359.97438 * 7 6 5 9 9 C 1.37883 * 120.00266 * 179.97438 * 7 6 5 10 10 N 1.31510 * 119.99812 * 359.97438 * 9 7 6 11 11 Si 1.86797 * 120.00114 * 179.97438 * 9 7 6 12 12 H 1.48499 * 109.47211 * 59.99841 * 11 9 7 13 13 H 1.48500 * 109.47216 * 180.02562 * 11 9 7 14 14 H 1.48503 * 109.46940 * 299.99975 * 11 9 7 15 15 C 1.34773 * 119.99767 * 95.18511 * 5 4 2 16 16 O 1.21279 * 120.00332 * 3.55540 * 15 5 4 17 17 C 1.50709 * 120.00066 * 183.55308 * 15 5 4 18 18 H 1.09004 * 110.87169 * 311.36783 * 17 15 5 19 19 C 1.55140 * 110.98967 * 187.51974 * 17 15 5 20 20 C 1.54317 * 103.01554 * 206.21521 * 19 17 15 21 21 N 1.47438 * 107.23434 * 22.28972 * 20 19 17 22 22 C 1.46899 * 111.00076 * 123.25386 * 21 20 19 23 23 C 1.47849 * 108.56753 * 0.98607 * 21 20 19 24 24 H 1.08998 * 109.47327 * 300.00099 * 1 2 3 25 25 H 1.09002 * 109.46887 * 60.00563 * 1 2 3 26 26 H 1.09004 * 109.47257 * 180.02562 * 1 2 3 27 27 H 1.08998 * 109.46982 * 239.99481 * 2 1 3 28 28 H 1.09003 * 109.47372 * 185.28522 * 3 2 1 29 29 H 1.09002 * 109.47192 * 305.27991 * 3 2 1 30 30 H 1.08997 * 109.47269 * 65.28435 * 3 2 1 31 31 H 1.09005 * 109.47177 * 56.25520 * 4 2 1 32 32 H 1.08996 * 109.47347 * 296.25197 * 4 2 1 33 33 H 1.09004 * 109.46874 * 25.13311 * 6 5 4 34 34 H 1.08999 * 109.47645 * 145.13587 * 6 5 4 35 35 H 0.97000 * 120.00092 * 180.02562 * 10 9 7 36 36 H 1.09001 * 110.70060 * 87.83835 * 19 17 15 37 37 H 1.08995 * 110.71020 * 324.60434 * 19 17 15 38 38 H 1.08996 * 109.89447 * 262.87845 * 20 19 17 39 39 H 1.09003 * 110.02037 * 141.76687 * 20 19 17 40 40 H 1.09003 * 109.47139 * 59.87799 * 22 21 20 41 41 H 1.09008 * 109.47276 * 179.87121 * 22 21 20 42 42 H 1.09001 * 109.47357 * 299.87336 * 22 21 20 43 43 H 1.08995 * 110.37254 * 94.73633 * 23 21 20 44 44 H 1.09003 * 110.36970 * 217.07346 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0399 -0.7212 1.2493 5 7 3.5022 -0.7999 1.2050 6 6 4.1554 -1.8898 0.4759 7 6 4.4802 -3.0093 1.4309 8 1 4.2259 -2.9180 2.4766 9 6 5.1021 -4.1503 0.9698 10 7 5.4113 -4.2617 -0.3036 11 14 5.5053 -5.5377 2.1537 12 1 4.2528 -6.0380 2.7751 13 1 6.1674 -6.6425 1.4146 14 1 6.4169 -5.0354 3.2129 15 6 4.2464 0.1303 1.8352 16 8 3.7071 0.9953 2.4923 17 6 5.7490 0.0957 1.7233 18 1 6.1301 -0.9062 1.9208 19 6 6.4009 1.1356 2.6723 20 6 7.7445 1.4445 1.9789 21 7 7.5928 1.0914 0.5555 22 6 7.8869 2.2436 -0.3070 23 6 6.2146 0.6032 0.3358 24 1 -0.3634 0.5138 0.8899 25 1 -0.3633 0.5138 -0.8901 26 1 -0.3634 -1.0277 0.0005 27 1 1.8933 -0.5139 -0.8899 28 1 3.1259 1.4439 -0.0947 29 1 1.6015 1.9829 -0.8389 30 1 1.7561 1.9282 0.9335 31 1 1.6228 -1.7277 1.2835 32 1 1.7325 -0.1701 2.1380 33 1 3.4868 -2.2584 -0.3021 34 1 5.0750 -1.5224 0.0205 35 1 5.8485 -5.0645 -0.6281 36 1 6.5669 0.7051 3.6598 37 1 5.7869 2.0335 2.7404 38 1 8.5388 0.8473 2.4265 39 1 7.9789 2.5047 2.0749 40 1 8.9110 2.5746 -0.1344 41 1 7.7696 1.9549 -1.3516 42 1 7.1983 3.0561 -0.0751 43 1 5.5740 1.4162 -0.0056 44 1 6.2118 -0.2126 -0.3872 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000386202117.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:03:35 Heat of formation + Delta-G solvation = -63.262166 kcal Electronic energy + Delta-G solvation = -22190.038583 eV Core-core repulsion = 19140.998833 eV Total energy + Delta-G solvation = -3049.039749 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.36953 -39.27686 -37.39748 -35.79029 -34.17691 -33.02975 -30.28726 -29.31028 -28.04282 -27.39646 -26.39892 -24.97846 -22.96723 -21.87873 -21.01690 -19.76039 -18.65621 -18.11149 -17.29574 -16.93333 -16.42312 -16.13529 -15.61577 -15.53241 -15.04271 -14.53270 -14.50126 -14.34345 -14.18190 -13.87783 -13.72702 -13.32344 -13.14935 -12.86778 -12.74589 -12.66648 -12.55049 -12.36322 -12.30061 -12.26888 -12.13278 -12.03720 -11.85033 -11.63462 -11.59742 -11.53698 -10.72202 -10.53089 -9.41092 -9.29714 -8.18828 -6.33212 1.41997 1.42858 1.50302 1.73554 2.28145 2.44605 3.05573 3.11422 3.56899 3.71793 3.81075 3.95819 4.03438 4.17572 4.23359 4.29161 4.45189 4.52401 4.55604 4.65137 4.65522 4.65939 4.77851 4.81865 4.87692 4.94610 4.96645 4.98747 4.99642 5.03604 5.08272 5.18807 5.28324 5.29952 5.39309 5.44920 5.66932 5.87078 5.91342 6.08523 6.11597 6.57116 6.82816 7.31310 7.42696 8.86095 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.011062 B = 0.008879 C = 0.005789 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2530.567874 B = 3152.884981 C = 4835.455655 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.107 4.107 3 C -0.127 4.127 4 C 0.118 3.882 5 N -0.594 5.594 6 C 0.252 3.748 7 C -0.549 4.549 8 H 0.048 0.952 9 C 0.026 3.974 10 N -0.915 5.915 11 Si 0.952 3.048 12 H -0.273 1.273 13 H -0.280 1.280 14 H -0.273 1.273 15 C 0.527 3.473 16 O -0.588 6.588 17 C -0.117 4.117 18 H 0.096 0.904 19 C -0.118 4.118 20 C 0.047 3.953 21 N -0.546 5.546 22 C 0.020 3.980 23 C 0.071 3.929 24 H 0.059 0.941 25 H 0.071 0.929 26 H 0.059 0.941 27 H 0.061 0.939 28 H 0.026 0.974 29 H 0.067 0.933 30 H 0.048 0.952 31 H 0.068 0.932 32 H 0.069 0.931 33 H 0.019 0.981 34 H 0.036 0.964 35 H 0.268 0.732 36 H 0.079 0.921 37 H 0.071 0.929 38 H 0.084 0.916 39 H 0.077 0.923 40 H 0.087 0.913 41 H 0.069 0.931 42 H 0.029 0.971 43 H 0.043 0.957 44 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.605 10.470 -0.161 10.488 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.127 4.127 3 C -0.184 4.184 4 C -0.005 4.005 5 N -0.323 5.323 6 C 0.131 3.869 7 C -0.588 4.588 8 H 0.066 0.934 9 C -0.175 4.175 10 N -0.554 5.554 11 Si 0.778 3.222 12 H -0.199 1.199 13 H -0.205 1.205 14 H -0.198 1.198 15 C 0.316 3.684 16 O -0.470 6.470 17 C -0.139 4.139 18 H 0.114 0.886 19 C -0.156 4.156 20 C -0.081 4.081 21 N -0.270 5.270 22 C -0.128 4.128 23 C -0.057 4.057 24 H 0.078 0.922 25 H 0.090 0.910 26 H 0.078 0.922 27 H 0.079 0.921 28 H 0.045 0.955 29 H 0.086 0.914 30 H 0.067 0.933 31 H 0.087 0.913 32 H 0.088 0.912 33 H 0.037 0.963 34 H 0.054 0.946 35 H 0.077 0.923 36 H 0.098 0.902 37 H 0.090 0.910 38 H 0.102 0.898 39 H 0.095 0.905 40 H 0.106 0.894 41 H 0.088 0.912 42 H 0.048 0.952 43 H 0.062 0.938 44 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -0.443 10.388 -0.121 10.398 hybrid contribution -0.332 -0.630 0.608 0.937 sum -0.775 9.758 0.488 9.801 Atomic orbital electron populations 1.21701 0.92592 1.02334 1.02597 1.21449 0.97445 0.96308 0.97477 1.21652 0.99437 0.95794 1.01516 1.21539 0.79822 1.00511 0.98667 1.48160 1.06602 1.26362 1.51207 1.19137 0.92940 0.83613 0.91183 1.21624 1.39876 1.02153 0.95117 0.93376 1.25588 0.95097 1.00300 0.96558 1.69989 1.41468 1.29209 1.14702 0.85698 0.78512 0.78894 0.79131 1.19869 1.20526 1.19775 1.20393 0.89660 0.80353 0.77989 1.90541 1.74578 1.38671 1.43234 1.22352 0.91602 1.02082 0.97890 0.88554 1.22632 0.96180 0.98159 0.98675 1.22883 0.96852 1.01050 0.87276 1.63580 1.23817 1.33624 1.05983 1.22613 1.01895 0.90665 0.97613 1.22790 0.88781 0.98771 0.95355 0.92226 0.91049 0.92195 0.92081 0.95452 0.91361 0.93332 0.91310 0.91210 0.96275 0.94617 0.92318 0.90237 0.91007 0.89761 0.90488 0.89429 0.91233 0.95208 0.93824 0.90786 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.24 9.19 71.98 0.66 -2.58 16 2 C -0.11 -3.34 3.13 -10.80 -0.03 -3.38 16 3 C -0.13 -3.90 8.08 71.98 0.58 -3.32 16 4 C 0.12 4.38 4.96 86.38 0.43 4.81 16 5 N -0.59 -25.27 2.26 -826.15 -1.86 -27.13 16 6 C 0.25 12.11 4.86 85.63 0.42 12.53 16 7 C -0.55 -28.91 8.74 25.60 0.22 -28.69 16 8 H 0.05 2.59 7.81 -2.91 -0.02 2.57 16 9 C 0.03 1.35 5.46 84.66 0.46 1.81 16 10 N -0.91 -50.52 13.29 21.45 0.28 -50.24 16 11 Si 0.95 42.28 29.54 68.60 2.03 44.30 16 12 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 13 H -0.28 -12.12 7.11 99.48 0.71 -11.41 16 14 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 15 C 0.53 22.16 5.58 87.66 0.49 22.65 16 16 O -0.59 -25.98 14.34 -3.03 -0.04 -26.02 16 17 C -0.12 -4.51 2.40 -10.15 -0.02 -4.54 16 18 H 0.10 4.22 7.15 -2.38 -0.02 4.20 16 19 C -0.12 -3.77 6.14 31.77 0.20 -3.57 16 20 C 0.05 1.27 6.90 86.65 0.60 1.86 16 21 N -0.55 -16.61 5.44 -911.70 -4.96 -21.58 16 22 C 0.02 0.48 9.12 127.69 1.16 1.64 16 23 C 0.07 2.51 5.74 86.77 0.50 3.01 16 24 H 0.06 1.37 8.14 -2.39 -0.02 1.35 16 25 H 0.07 1.47 8.14 -2.39 -0.02 1.45 16 26 H 0.06 1.39 8.14 -2.39 -0.02 1.37 16 27 H 0.06 2.03 8.14 -2.39 -0.02 2.02 16 28 H 0.03 0.94 6.95 -2.39 -0.02 0.92 16 29 H 0.07 1.74 8.14 -2.39 -0.02 1.72 16 30 H 0.05 1.57 7.99 -2.39 -0.02 1.55 16 31 H 0.07 2.59 8.11 -2.38 -0.02 2.57 16 32 H 0.07 2.65 7.23 -2.39 -0.02 2.63 16 33 H 0.02 0.97 8.04 -2.38 -0.02 0.96 16 34 H 0.04 1.78 4.89 -2.39 -0.01 1.77 16 35 H 0.27 14.08 8.31 -92.71 -0.77 13.31 16 36 H 0.08 2.43 8.14 -2.39 -0.02 2.41 16 37 H 0.07 2.39 7.29 -2.39 -0.02 2.37 16 38 H 0.08 2.17 8.14 -2.39 -0.02 2.15 16 39 H 0.08 1.71 7.58 -2.39 -0.02 1.70 16 40 H 0.09 1.69 8.14 -2.39 -0.02 1.67 16 41 H 0.07 1.60 8.14 -2.38 -0.02 1.58 16 42 H 0.03 0.67 8.10 -2.39 -0.02 0.65 16 43 H 0.04 1.50 7.67 -2.39 -0.02 1.48 16 44 H 0.07 2.91 6.40 -2.39 -0.02 2.90 16 Total: -1.00 -59.03 343.31 2.05 -56.99 By element: Atomic # 1 Polarization: 20.51 SS G_CDS: 0.94 Total: 21.45 kcal Atomic # 6 Polarization: -3.43 SS G_CDS: 5.66 Total: 2.23 kcal Atomic # 7 Polarization: -92.41 SS G_CDS: -6.54 Total: -98.95 kcal Atomic # 8 Polarization: -25.98 SS G_CDS: -0.04 Total: -26.02 kcal Atomic # 14 Polarization: 42.28 SS G_CDS: 2.03 Total: 44.30 kcal Total: -59.03 2.05 -56.99 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000386202117.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.277 kcal (2) G-P(sol) polarization free energy of solvation -59.031 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.308 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.046 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.985 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.262 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds