Wall clock time and date at job start Mon Mar 30 2020 01:03:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 C 1.52997 * 109.47253 * 2 1 4 4 C 1.52996 * 109.46612 * 120.00383 * 2 1 3 5 5 N 1.46491 * 109.47638 * 65.43892 * 4 2 1 6 6 C 1.46498 * 120.00168 * 264.27740 * 5 4 2 7 7 C 1.50699 * 109.47519 * 269.99697 * 6 5 4 8 8 H 1.08003 * 119.99677 * 0.02562 * 7 6 5 9 9 C 1.37879 * 120.00328 * 179.97438 * 7 6 5 10 10 N 1.31514 * 119.99827 * 180.02562 * 9 7 6 11 11 Si 1.86797 * 119.99665 * 0.02562 * 9 7 6 12 12 H 1.48499 * 109.47320 * 89.99647 * 11 9 7 13 13 H 1.48503 * 109.46847 * 209.99243 * 11 9 7 14 14 H 1.48499 * 109.47153 * 329.99163 * 11 9 7 15 15 C 1.34780 * 119.99917 * 84.28109 * 5 4 2 16 16 O 1.21282 * 120.00159 * 5.16855 * 15 5 4 17 17 C 1.50705 * 119.99819 * 185.17564 * 15 5 4 18 18 H 1.08994 * 110.87629 * 35.20308 * 17 15 5 19 19 C 1.55396 * 111.05763 * 158.94815 * 17 15 5 20 20 C 1.54317 * 102.90131 * 153.65045 * 19 17 15 21 21 N 1.47445 * 107.36782 * 337.89010 * 20 19 17 22 22 C 1.46900 * 110.99915 * 236.66290 * 21 20 19 23 23 C 1.47841 * 108.56633 * 358.92962 * 21 20 19 24 24 H 1.09005 * 109.46529 * 60.00250 * 1 2 3 25 25 H 1.08998 * 109.46859 * 179.97438 * 1 2 3 26 26 H 1.08995 * 109.47217 * 300.00070 * 1 2 3 27 27 H 1.09005 * 109.47017 * 239.99938 * 2 1 3 28 28 H 1.08997 * 109.47149 * 180.02562 * 3 2 1 29 29 H 1.08997 * 109.46998 * 300.00225 * 3 2 1 30 30 H 1.09008 * 109.47018 * 59.99530 * 3 2 1 31 31 H 1.08998 * 109.47131 * 305.43416 * 4 2 1 32 32 H 1.09003 * 109.46925 * 185.44274 * 4 2 1 33 33 H 1.09004 * 109.47034 * 30.00179 * 6 5 4 34 34 H 1.09002 * 109.47155 * 150.00155 * 6 5 4 35 35 H 0.97006 * 119.99400 * 180.02562 * 10 9 7 36 36 H 1.09001 * 110.68214 * 35.33947 * 19 17 15 37 37 H 1.09007 * 110.84426 * 272.03117 * 19 17 15 38 38 H 1.08999 * 109.88547 * 218.40688 * 20 19 17 39 39 H 1.08993 * 109.89014 * 97.38034 * 20 19 17 40 40 H 1.09004 * 109.47354 * 60.12899 * 22 21 20 41 41 H 1.09000 * 109.47346 * 180.12617 * 22 21 20 42 42 H 1.09003 * 109.47543 * 300.12852 * 22 21 20 43 43 H 1.09005 * 110.36686 * 142.92248 * 23 21 20 44 44 H 1.09000 * 110.37716 * 265.15339 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 7 1.6615 -2.1351 1.1855 6 6 0.4460 -2.5990 1.8589 7 6 0.7795 -3.0122 3.2693 8 1 1.7953 -2.9364 3.6283 9 6 -0.2123 -3.4861 4.1017 10 7 0.0788 -3.8462 5.3326 11 14 -1.9693 -3.6166 3.4809 12 1 -2.1821 -4.9555 2.8750 13 1 -2.9099 -3.4314 4.6151 14 1 -2.2126 -2.5665 2.4595 15 6 2.4316 -3.0090 0.5075 16 8 3.4852 -2.6450 0.0296 17 6 1.9834 -4.4384 0.3430 18 1 0.9005 -4.4957 0.2334 19 6 2.6981 -5.1127 -0.8609 20 6 2.6801 -6.6077 -0.4790 21 7 2.5224 -6.6862 0.9849 22 6 3.6211 -7.4489 1.5926 23 6 2.4684 -5.3117 1.5269 24 1 -0.3632 0.5138 -0.8901 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8899 27 1 1.8934 -0.5139 -0.8900 28 1 3.1301 1.4424 -0.0005 29 1 1.6768 1.9563 -0.8899 30 1 1.6767 1.9563 0.8900 31 1 1.5993 -0.2668 2.1365 32 1 3.1256 -0.6377 1.2993 33 1 -0.2877 -1.7932 1.8802 34 1 0.0340 -3.4513 1.3185 35 1 -0.6190 -4.1799 5.9181 36 1 3.7222 -4.7506 -0.9526 37 1 2.1445 -4.9442 -1.7847 38 1 3.6174 -7.0778 -0.7767 39 1 1.8437 -7.1056 -0.9693 40 1 4.5694 -6.9594 1.3709 41 1 3.4789 -7.4932 2.6724 42 1 3.6302 -8.4600 1.1856 43 1 1.7600 -5.2575 2.3536 44 1 3.4581 -4.9938 1.8547 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000386202122.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:03:38 Heat of formation + Delta-G solvation = -41.517803 kcal Electronic energy + Delta-G solvation = -22180.925255 eV Core-core repulsion = 19132.828412 eV Total energy + Delta-G solvation = -3048.096843 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -39.83381 -37.91684 -36.06595 -34.10816 -32.31894 -31.72591 -28.89214 -28.16925 -26.90032 -26.10992 -25.05967 -22.65934 -21.53423 -20.51698 -19.91109 -18.08166 -17.04503 -16.67452 -15.86021 -15.37348 -14.90794 -14.62676 -14.22452 -13.86189 -13.75903 -13.17579 -13.13252 -12.97191 -12.72679 -12.53881 -12.24046 -12.12733 -11.89257 -11.51786 -11.40406 -11.18351 -11.11449 -11.00685 -10.95075 -10.72014 -10.58525 -10.56763 -10.35024 -10.23197 -10.15613 -9.59847 -9.10742 -8.68877 -7.99903 -7.73458 -6.20568 -4.21421 3.20006 3.26194 3.27117 3.29061 3.77427 4.28140 4.39746 4.90149 5.07744 5.10223 5.12099 5.22279 5.28172 5.37854 5.55859 5.58434 5.66703 5.70545 5.80927 5.84330 5.89576 5.93897 5.96145 6.07156 6.09607 6.15955 6.20254 6.24942 6.26491 6.34133 6.40495 6.51294 6.62010 6.64046 6.70806 6.81269 7.25565 7.35013 7.36510 7.45784 8.12847 8.41762 8.82703 8.92224 9.38970 10.91755 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.011566 B = 0.009448 C = 0.005967 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2420.212884 B = 2962.909888 C = 4691.658121 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.111 4.111 3 C -0.141 4.141 4 C 0.125 3.875 5 N -0.585 5.585 6 C 0.205 3.795 7 C -0.537 4.537 8 H 0.078 0.922 9 C 0.079 3.921 10 N -0.889 5.889 11 Si 0.867 3.133 12 H -0.271 1.271 13 H -0.284 1.284 14 H -0.265 1.265 15 C 0.529 3.471 16 O -0.570 6.570 17 C -0.113 4.113 18 H 0.102 0.898 19 C -0.127 4.127 20 C 0.041 3.959 21 N -0.533 5.533 22 C 0.022 3.978 23 C 0.062 3.938 24 H 0.046 0.954 25 H 0.059 0.941 26 H 0.055 0.945 27 H 0.068 0.932 28 H 0.054 0.946 29 H 0.051 0.949 30 H 0.055 0.945 31 H 0.080 0.920 32 H 0.071 0.929 33 H 0.036 0.964 34 H 0.031 0.969 35 H 0.266 0.734 36 H 0.080 0.920 37 H 0.071 0.929 38 H 0.051 0.949 39 H 0.074 0.926 40 H 0.024 0.976 41 H 0.070 0.930 42 H 0.063 0.937 43 H 0.115 0.885 44 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.595 0.687 -10.357 10.501 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.131 4.131 3 C -0.199 4.199 4 C 0.002 3.998 5 N -0.314 5.314 6 C 0.083 3.917 7 C -0.576 4.576 8 H 0.096 0.904 9 C -0.125 4.125 10 N -0.526 5.526 11 Si 0.693 3.307 12 H -0.196 1.196 13 H -0.210 1.210 14 H -0.189 1.189 15 C 0.317 3.683 16 O -0.451 6.451 17 C -0.134 4.134 18 H 0.120 0.880 19 C -0.166 4.166 20 C -0.087 4.087 21 N -0.257 5.257 22 C -0.127 4.127 23 C -0.066 4.066 24 H 0.065 0.935 25 H 0.078 0.922 26 H 0.074 0.926 27 H 0.087 0.913 28 H 0.073 0.927 29 H 0.070 0.930 30 H 0.074 0.926 31 H 0.098 0.902 32 H 0.089 0.911 33 H 0.054 0.946 34 H 0.048 0.952 35 H 0.076 0.924 36 H 0.099 0.901 37 H 0.090 0.910 38 H 0.070 0.930 39 H 0.092 0.908 40 H 0.042 0.958 41 H 0.089 0.911 42 H 0.082 0.918 43 H 0.133 0.867 44 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 1.581 0.538 -10.270 10.405 hybrid contribution -0.337 0.254 -0.199 0.467 sum 1.245 0.792 -10.469 10.572 Atomic orbital electron populations 1.21887 0.95284 1.02133 1.01032 1.21499 0.96096 0.96035 0.99474 1.21742 1.00926 0.95797 1.01441 1.21371 1.00320 0.81000 0.97154 1.47883 1.26103 1.07260 1.50187 1.19945 0.82810 0.95450 0.93453 1.21330 0.97515 1.43990 0.94735 0.90400 1.24838 0.98552 0.94481 0.94610 1.69887 1.33686 1.42754 1.06310 0.86988 0.85237 0.79406 0.79039 1.19606 1.20989 1.18933 1.20142 0.83520 0.87089 0.77585 1.90577 1.23502 1.79703 1.51314 1.22387 1.02045 0.92236 0.96766 0.87976 1.22764 1.01949 0.94541 0.97334 1.22839 1.00638 0.96028 0.89153 1.63675 1.43195 1.14946 1.03912 1.22512 0.91688 0.97798 1.00691 1.23059 1.01452 0.84901 0.97145 0.93487 0.92226 0.92617 0.91314 0.92728 0.92984 0.92624 0.90155 0.91097 0.94569 0.95152 0.92388 0.90114 0.91007 0.93014 0.90768 0.95764 0.91137 0.91815 0.86726 0.93684 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.12 8.36 37.16 0.31 -1.81 16 2 C -0.11 -1.70 3.08 -90.62 -0.28 -1.98 16 3 C -0.14 -1.78 9.19 37.16 0.34 -1.43 16 4 C 0.12 2.25 4.82 -4.05 -0.02 2.23 16 5 N -0.59 -11.76 2.20 -175.06 -0.38 -12.15 16 6 C 0.20 4.39 3.21 -5.19 -0.02 4.38 16 7 C -0.54 -13.69 8.64 -34.44 -0.30 -13.99 16 8 H 0.08 2.24 8.06 -52.48 -0.42 1.82 16 9 C 0.08 2.09 5.47 -17.82 -0.10 1.99 16 10 N -0.89 -25.35 13.96 55.43 0.77 -24.58 16 11 Si 0.87 19.62 27.47 -169.99 -4.67 14.95 16 12 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 13 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 14 H -0.26 -5.65 6.54 56.52 0.37 -5.28 16 15 C 0.53 10.76 6.85 -10.98 -0.08 10.69 16 16 O -0.57 -12.63 15.43 5.56 0.09 -12.54 16 17 C -0.11 -2.06 2.59 -89.49 -0.23 -2.29 16 18 H 0.10 1.85 6.30 -51.93 -0.33 1.52 16 19 C -0.13 -1.99 6.28 -24.77 -0.16 -2.14 16 20 C 0.04 0.60 6.89 -2.84 -0.02 0.58 16 21 N -0.53 -8.95 5.44 -239.52 -1.30 -10.25 16 22 C 0.02 0.32 9.12 60.06 0.55 0.86 16 23 C 0.06 1.19 6.10 -2.30 -0.01 1.17 16 24 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 25 H 0.06 0.95 6.34 -51.93 -0.33 0.62 16 26 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 27 H 0.07 1.14 8.14 -51.93 -0.42 0.71 16 28 H 0.05 0.68 8.14 -51.93 -0.42 0.25 16 29 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 30 H 0.05 0.66 8.14 -51.92 -0.42 0.24 16 31 H 0.08 1.45 8.03 -51.93 -0.42 1.03 16 32 H 0.07 1.33 7.53 -51.93 -0.39 0.94 16 33 H 0.04 0.77 5.69 -51.93 -0.30 0.48 16 34 H 0.03 0.64 5.28 -51.93 -0.27 0.37 16 35 H 0.27 7.17 8.31 -40.82 -0.34 6.83 16 36 H 0.08 1.36 7.21 -51.93 -0.37 0.99 16 37 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 38 H 0.05 0.67 7.58 -51.93 -0.39 0.27 16 39 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 40 H 0.02 0.34 8.10 -51.93 -0.42 -0.08 16 41 H 0.07 1.04 8.14 -51.93 -0.42 0.61 16 42 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 43 H 0.11 2.54 6.89 -51.93 -0.36 2.18 16 44 H 0.04 0.91 7.67 -51.93 -0.40 0.51 16 LS Contribution 340.26 15.07 5.13 5.13 Total: -1.00 -28.61 340.26 -8.17 -36.79 By element: Atomic # 1 Polarization: 12.20 SS G_CDS: -7.80 Total: 4.40 kcal Atomic # 6 Polarization: -1.74 SS G_CDS: -0.01 Total: -1.75 kcal Atomic # 7 Polarization: -46.06 SS G_CDS: -0.92 Total: -46.97 kcal Atomic # 8 Polarization: -12.63 SS G_CDS: 0.09 Total: -12.54 kcal Atomic # 14 Polarization: 19.62 SS G_CDS: -4.67 Total: 14.95 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -28.61 -8.17 -36.79 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000386202122.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.732 kcal (2) G-P(sol) polarization free energy of solvation -28.611 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.344 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.174 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.785 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.518 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds