Wall clock time and date at job start Mon Mar 30 2020 01:03:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 C 1.52997 * 109.47253 * 2 1 4 4 C 1.52996 * 109.46612 * 120.00383 * 2 1 3 5 5 N 1.46491 * 109.47638 * 65.43892 * 4 2 1 6 6 C 1.46498 * 120.00168 * 264.27740 * 5 4 2 7 7 C 1.50699 * 109.47519 * 269.99697 * 6 5 4 8 8 H 1.08003 * 119.99677 * 0.02562 * 7 6 5 9 9 C 1.37879 * 120.00328 * 179.97438 * 7 6 5 10 10 N 1.31514 * 119.99827 * 180.02562 * 9 7 6 11 11 Si 1.86797 * 119.99665 * 0.02562 * 9 7 6 12 12 H 1.48499 * 109.47320 * 89.99647 * 11 9 7 13 13 H 1.48503 * 109.46847 * 209.99243 * 11 9 7 14 14 H 1.48499 * 109.47153 * 329.99163 * 11 9 7 15 15 C 1.34780 * 119.99917 * 84.28109 * 5 4 2 16 16 O 1.21282 * 120.00159 * 5.16855 * 15 5 4 17 17 C 1.50705 * 119.99819 * 185.17564 * 15 5 4 18 18 H 1.08994 * 110.87629 * 35.20308 * 17 15 5 19 19 C 1.55396 * 111.05763 * 158.94815 * 17 15 5 20 20 C 1.54317 * 102.90131 * 153.65045 * 19 17 15 21 21 N 1.47445 * 107.36782 * 337.89010 * 20 19 17 22 22 C 1.46900 * 110.99915 * 236.66290 * 21 20 19 23 23 C 1.47841 * 108.56633 * 358.92962 * 21 20 19 24 24 H 1.09005 * 109.46529 * 60.00250 * 1 2 3 25 25 H 1.08998 * 109.46859 * 179.97438 * 1 2 3 26 26 H 1.08995 * 109.47217 * 300.00070 * 1 2 3 27 27 H 1.09005 * 109.47017 * 239.99938 * 2 1 3 28 28 H 1.08997 * 109.47149 * 180.02562 * 3 2 1 29 29 H 1.08997 * 109.46998 * 300.00225 * 3 2 1 30 30 H 1.09008 * 109.47018 * 59.99530 * 3 2 1 31 31 H 1.08998 * 109.47131 * 305.43416 * 4 2 1 32 32 H 1.09003 * 109.46925 * 185.44274 * 4 2 1 33 33 H 1.09004 * 109.47034 * 30.00179 * 6 5 4 34 34 H 1.09002 * 109.47155 * 150.00155 * 6 5 4 35 35 H 0.97006 * 119.99400 * 180.02562 * 10 9 7 36 36 H 1.09001 * 110.68214 * 35.33947 * 19 17 15 37 37 H 1.09007 * 110.84426 * 272.03117 * 19 17 15 38 38 H 1.08999 * 109.88547 * 218.40688 * 20 19 17 39 39 H 1.08993 * 109.89014 * 97.38034 * 20 19 17 40 40 H 1.09004 * 109.47354 * 60.12899 * 22 21 20 41 41 H 1.09000 * 109.47346 * 180.12617 * 22 21 20 42 42 H 1.09003 * 109.47543 * 300.12852 * 22 21 20 43 43 H 1.09005 * 110.36686 * 142.92248 * 23 21 20 44 44 H 1.09000 * 110.37716 * 265.15339 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 7 1.6615 -2.1351 1.1855 6 6 0.4460 -2.5990 1.8589 7 6 0.7795 -3.0122 3.2693 8 1 1.7953 -2.9364 3.6283 9 6 -0.2123 -3.4861 4.1017 10 7 0.0788 -3.8462 5.3326 11 14 -1.9693 -3.6166 3.4809 12 1 -2.1821 -4.9555 2.8750 13 1 -2.9099 -3.4314 4.6151 14 1 -2.2126 -2.5665 2.4595 15 6 2.4316 -3.0090 0.5075 16 8 3.4852 -2.6450 0.0296 17 6 1.9834 -4.4384 0.3430 18 1 0.9005 -4.4957 0.2334 19 6 2.6981 -5.1127 -0.8609 20 6 2.6801 -6.6077 -0.4790 21 7 2.5224 -6.6862 0.9849 22 6 3.6211 -7.4489 1.5926 23 6 2.4684 -5.3117 1.5269 24 1 -0.3632 0.5138 -0.8901 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8899 27 1 1.8934 -0.5139 -0.8900 28 1 3.1301 1.4424 -0.0005 29 1 1.6768 1.9563 -0.8899 30 1 1.6767 1.9563 0.8900 31 1 1.5993 -0.2668 2.1365 32 1 3.1256 -0.6377 1.2993 33 1 -0.2877 -1.7932 1.8802 34 1 0.0340 -3.4513 1.3185 35 1 -0.6190 -4.1799 5.9181 36 1 3.7222 -4.7506 -0.9526 37 1 2.1445 -4.9442 -1.7847 38 1 3.6174 -7.0778 -0.7767 39 1 1.8437 -7.1056 -0.9693 40 1 4.5694 -6.9594 1.3709 41 1 3.4789 -7.4932 2.6724 42 1 3.6302 -8.4600 1.1856 43 1 1.7600 -5.2575 2.3536 44 1 3.4581 -4.9938 1.8547 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000386202122.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:03:37 Heat of formation + Delta-G solvation = -59.548319 kcal Electronic energy + Delta-G solvation = -22181.707117 eV Core-core repulsion = 19132.828412 eV Total energy + Delta-G solvation = -3048.878705 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.38687 -39.30625 -37.56665 -35.69920 -34.23500 -33.05804 -30.29290 -29.94586 -28.01405 -27.54308 -26.38211 -24.50092 -23.00271 -21.81156 -21.18647 -19.69929 -19.00584 -18.26692 -17.39708 -16.82424 -16.33383 -16.17104 -15.81809 -15.25773 -15.04651 -14.70956 -14.57525 -14.44672 -14.15998 -13.98612 -13.68501 -13.65527 -13.18073 -12.99438 -12.67654 -12.61219 -12.54923 -12.41398 -12.31850 -12.18586 -12.05460 -11.97659 -11.77350 -11.68390 -11.60527 -11.50917 -10.81919 -10.64823 -9.41819 -9.32834 -8.26301 -6.31919 1.42057 1.43042 1.51185 1.63476 2.22776 2.36867 3.03223 3.10093 3.57111 3.73246 3.74068 3.98001 4.01514 4.16928 4.17549 4.25824 4.41265 4.45269 4.54987 4.59135 4.66526 4.69778 4.74884 4.76681 4.86053 4.88122 4.93234 4.94707 4.98210 5.02921 5.04546 5.15636 5.21781 5.28163 5.38110 5.42869 5.50256 5.73779 5.89837 6.10046 6.21022 6.60444 6.72419 7.23349 7.35237 8.89710 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.011566 B = 0.009448 C = 0.005967 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2420.212884 B = 2962.909888 C = 4691.658121 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.103 4.103 3 C -0.136 4.136 4 C 0.120 3.880 5 N -0.589 5.589 6 C 0.216 3.784 7 C -0.530 4.530 8 H 0.028 0.972 9 C 0.024 3.976 10 N -0.940 5.940 11 Si 0.932 3.068 12 H -0.264 1.264 13 H -0.287 1.287 14 H -0.236 1.236 15 C 0.523 3.477 16 O -0.591 6.591 17 C -0.114 4.114 18 H 0.108 0.892 19 C -0.118 4.118 20 C 0.044 3.956 21 N -0.544 5.544 22 C 0.021 3.979 23 C 0.072 3.928 24 H 0.070 0.930 25 H 0.044 0.956 26 H 0.057 0.943 27 H 0.055 0.945 28 H 0.051 0.949 29 H 0.072 0.928 30 H 0.062 0.938 31 H 0.076 0.924 32 H 0.056 0.944 33 H 0.050 0.950 34 H 0.044 0.956 35 H 0.267 0.733 36 H 0.065 0.935 37 H 0.096 0.904 38 H 0.072 0.928 39 H 0.095 0.905 40 H 0.025 0.975 41 H 0.058 0.942 42 H 0.093 0.907 43 H 0.078 0.922 44 H 0.022 0.978 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.024 0.682 -12.952 12.970 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.123 4.123 3 C -0.194 4.194 4 C -0.003 4.003 5 N -0.317 5.317 6 C 0.094 3.906 7 C -0.569 4.569 8 H 0.046 0.954 9 C -0.175 4.175 10 N -0.580 5.580 11 Si 0.754 3.246 12 H -0.188 1.188 13 H -0.213 1.213 14 H -0.159 1.159 15 C 0.312 3.688 16 O -0.474 6.474 17 C -0.136 4.136 18 H 0.126 0.874 19 C -0.157 4.157 20 C -0.083 4.083 21 N -0.268 5.268 22 C -0.127 4.127 23 C -0.056 4.056 24 H 0.089 0.911 25 H 0.064 0.936 26 H 0.077 0.923 27 H 0.074 0.926 28 H 0.070 0.930 29 H 0.091 0.909 30 H 0.082 0.918 31 H 0.095 0.905 32 H 0.074 0.926 33 H 0.068 0.932 34 H 0.061 0.939 35 H 0.076 0.924 36 H 0.084 0.916 37 H 0.115 0.885 38 H 0.090 0.910 39 H 0.113 0.887 40 H 0.044 0.956 41 H 0.077 0.923 42 H 0.111 0.889 43 H 0.096 0.904 44 H 0.041 0.959 Dipole moment (debyes) X Y Z Total from point charges 0.022 0.549 -12.891 12.902 hybrid contribution 0.287 0.252 0.667 0.768 sum 0.308 0.801 -12.224 12.254 Atomic orbital electron populations 1.21864 0.94250 1.01594 1.02372 1.21409 0.96881 0.97071 0.96898 1.21712 1.00804 0.94049 1.02845 1.21529 0.99575 0.80358 0.98845 1.47953 1.25761 1.08244 1.49778 1.19752 0.83536 0.96166 0.91112 1.21396 0.95238 1.43433 0.96790 0.95353 1.25682 1.03277 0.94038 0.94515 1.70048 1.35245 1.44612 1.08065 0.85948 0.79171 0.80440 0.78992 1.18835 1.21302 1.15944 1.20547 0.83174 0.87912 0.77164 1.90557 1.24276 1.80240 1.52292 1.22425 1.02621 0.90803 0.97704 0.87364 1.22746 1.00995 0.94897 0.97065 1.22946 1.02653 0.95366 0.87368 1.63650 1.44503 1.13067 1.05602 1.22577 0.91015 0.98965 1.00190 1.22730 0.99107 0.87072 0.96706 0.91089 0.93644 0.92345 0.92610 0.92996 0.90912 0.91848 0.90529 0.92571 0.93234 0.93859 0.92431 0.91593 0.88537 0.90990 0.88678 0.95641 0.92301 0.88880 0.90394 0.95937 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.80 8.36 71.99 0.60 -3.19 16 2 C -0.10 -2.99 3.08 -10.79 -0.03 -3.03 16 3 C -0.14 -3.15 9.19 71.98 0.66 -2.49 16 4 C 0.12 4.34 4.82 86.38 0.42 4.76 16 5 N -0.59 -23.86 2.20 -826.17 -1.82 -25.67 16 6 C 0.22 9.19 3.21 85.63 0.28 9.46 16 7 C -0.53 -27.85 8.64 25.60 0.22 -27.63 16 8 H 0.03 1.73 8.06 -2.91 -0.02 1.71 16 9 C 0.02 1.29 5.47 84.66 0.46 1.75 16 10 N -0.94 -55.55 13.96 21.45 0.30 -55.25 16 11 Si 0.93 39.81 27.47 68.60 1.88 41.69 16 12 H -0.26 -10.94 7.11 99.48 0.71 -10.23 16 13 H -0.29 -12.39 7.11 99.48 0.71 -11.68 16 14 H -0.24 -8.97 6.54 99.48 0.65 -8.32 16 15 C 0.52 21.50 6.85 87.66 0.60 22.10 16 16 O -0.59 -26.55 15.43 -3.04 -0.05 -26.59 16 17 C -0.11 -4.12 2.59 -10.06 -0.03 -4.14 16 18 H 0.11 3.76 6.30 -2.39 -0.02 3.75 16 19 C -0.12 -3.48 6.28 31.87 0.20 -3.28 16 20 C 0.04 1.15 6.89 86.65 0.60 1.74 16 21 N -0.54 -17.73 5.44 -911.69 -4.96 -22.69 16 22 C 0.02 0.58 9.12 127.69 1.16 1.75 16 23 C 0.07 2.85 6.10 86.77 0.53 3.37 16 24 H 0.07 1.54 8.14 -2.38 -0.02 1.52 16 25 H 0.04 1.32 6.34 -2.39 -0.02 1.31 16 26 H 0.06 1.51 8.14 -2.39 -0.02 1.49 16 27 H 0.06 1.78 8.14 -2.38 -0.02 1.76 16 28 H 0.05 1.22 8.14 -2.39 -0.02 1.20 16 29 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 30 H 0.06 1.37 8.14 -2.38 -0.02 1.35 16 31 H 0.08 2.79 8.03 -2.39 -0.02 2.77 16 32 H 0.06 2.17 7.53 -2.39 -0.02 2.15 16 33 H 0.05 2.01 5.69 -2.38 -0.01 2.00 16 34 H 0.04 1.76 5.28 -2.39 -0.01 1.75 16 35 H 0.27 14.82 8.31 -92.70 -0.77 14.05 16 36 H 0.07 2.15 7.21 -2.39 -0.02 2.13 16 37 H 0.10 2.36 8.14 -2.38 -0.02 2.34 16 38 H 0.07 1.61 7.58 -2.39 -0.02 1.60 16 39 H 0.10 2.14 8.14 -2.39 -0.02 2.12 16 40 H 0.02 0.70 8.10 -2.38 -0.02 0.68 16 41 H 0.06 1.76 8.14 -2.39 -0.02 1.74 16 42 H 0.09 2.06 8.14 -2.39 -0.02 2.04 16 43 H 0.08 3.63 6.89 -2.38 -0.02 3.61 16 44 H 0.02 0.96 7.67 -2.39 -0.02 0.94 16 Total: -1.00 -64.12 340.26 1.92 -62.19 By element: Atomic # 1 Polarization: 24.25 SS G_CDS: 0.89 Total: 25.14 kcal Atomic # 6 Polarization: -4.49 SS G_CDS: 5.67 Total: 1.18 kcal Atomic # 7 Polarization: -97.13 SS G_CDS: -6.48 Total: -103.61 kcal Atomic # 8 Polarization: -26.55 SS G_CDS: -0.05 Total: -26.59 kcal Atomic # 14 Polarization: 39.81 SS G_CDS: 1.88 Total: 41.69 kcal Total: -64.12 1.92 -62.19 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000386202122.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.646 kcal (2) G-P(sol) polarization free energy of solvation -64.116 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.470 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.921 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.194 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.548 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds