Wall clock time and date at job start Mon Mar 30 2020 00:59:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53000 * 109.46772 * 2 1 4 4 C 1.53000 * 109.47187 * 119.99226 * 2 1 3 5 5 N 1.46903 * 109.46639 * 65.11259 * 4 2 1 6 6 C 1.46901 * 111.00300 * 75.73761 * 5 4 2 7 7 C 1.50699 * 109.46774 * 199.60495 * 6 5 4 8 8 H 1.07997 * 120.00712 * 355.13248 * 7 6 5 9 9 C 1.37882 * 119.99454 * 175.13815 * 7 6 5 10 10 N 1.31510 * 120.00221 * 359.97438 * 9 7 6 11 11 Si 1.86805 * 119.99687 * 180.02562 * 9 7 6 12 12 H 1.48500 * 109.46803 * 179.97438 * 11 9 7 13 13 H 1.48498 * 109.46764 * 299.99246 * 11 9 7 14 14 H 1.48499 * 109.47313 * 59.99351 * 11 9 7 15 15 C 1.46907 * 110.99638 * 199.68825 * 5 4 2 16 16 C 1.53000 * 109.46808 * 66.04804 * 15 5 4 17 17 C 1.53006 * 109.46718 * 179.97438 * 16 15 5 18 18 H 1.09000 * 110.43427 * 56.08841 * 17 16 15 19 19 C 1.54636 * 110.48415 * 178.76698 * 17 16 15 20 20 C 1.54483 * 101.76099 * 143.47691 * 19 17 16 21 21 N 1.46761 * 105.47334 * 334.58610 * 20 19 17 22 22 C 1.34416 * 111.30535 * 17.01432 * 21 20 19 23 23 O 1.21278 * 124.94397 * 179.55317 * 22 21 20 24 24 H 1.08998 * 109.47324 * 60.00779 * 1 2 3 25 25 H 1.09006 * 109.46542 * 180.02562 * 1 2 3 26 26 H 1.08994 * 109.47456 * 300.00101 * 1 2 3 27 27 H 1.08994 * 109.47456 * 239.99899 * 2 1 3 28 28 H 1.09003 * 109.46992 * 180.02562 * 3 2 1 29 29 H 1.09006 * 109.47144 * 299.99606 * 3 2 1 30 30 H 1.08995 * 109.47495 * 59.99279 * 3 2 1 31 31 H 1.08996 * 109.47355 * 305.11395 * 4 2 1 32 32 H 1.09000 * 109.46948 * 185.10644 * 4 2 1 33 33 H 1.09000 * 109.47080 * 79.60030 * 6 5 4 34 34 H 1.09004 * 109.46807 * 319.60150 * 6 5 4 35 35 H 0.96997 * 120.00356 * 180.02562 * 10 9 7 36 36 H 1.09003 * 109.47065 * 186.04365 * 15 5 4 37 37 H 1.08991 * 109.47202 * 306.04743 * 15 5 4 38 38 H 1.09003 * 109.46949 * 299.99632 * 16 15 5 39 39 H 1.08999 * 109.47799 * 60.00344 * 16 15 5 40 40 H 1.08998 * 110.97111 * 261.59640 * 19 17 16 41 41 H 1.09000 * 110.96989 * 25.36211 * 19 17 16 42 42 H 1.08997 * 110.24257 * 215.58261 * 20 19 17 43 43 H 1.09000 * 110.31666 * 93.62866 * 20 19 17 44 44 H 0.97004 * 124.34453 * 197.03951 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7211 1.2493 5 7 1.6537 -2.1371 1.1893 6 6 2.5011 -2.8744 0.2426 7 6 1.8106 -4.1520 -0.1599 8 1 0.8767 -4.4309 0.3054 9 6 2.3712 -4.9649 -1.1221 10 7 3.5082 -4.6252 -1.6890 11 14 1.5149 -6.5483 -1.6216 12 1 2.3156 -7.2356 -2.6665 13 1 1.3818 -7.4338 -0.4370 14 1 0.1666 -6.2338 -2.1586 15 6 1.6967 -2.7515 2.5231 16 6 0.6233 -2.1186 3.4108 17 6 0.6676 -2.7589 4.7997 18 1 1.6644 -2.6648 5.2305 19 6 -0.3888 -2.1141 5.7269 20 6 -0.8609 -3.3277 6.5581 21 7 -0.6015 -4.5026 5.7178 22 6 0.2580 -4.2133 4.7256 23 8 0.6488 -5.0034 3.8927 24 1 -0.3634 0.5137 -0.8900 25 1 -0.3632 -1.0278 0.0005 26 1 -0.3634 0.5138 0.8899 27 1 1.8934 -0.5138 -0.8899 28 1 3.1300 1.4426 -0.0005 29 1 1.6766 1.9564 -0.8901 30 1 1.6765 1.9564 0.8899 31 1 1.6039 -0.2628 2.1369 32 1 3.1262 -0.6425 1.2962 33 1 3.4544 -3.1100 0.7156 34 1 2.6759 -2.2617 -0.6418 35 1 3.9024 -5.1969 -2.3662 36 1 1.5113 -3.8221 2.4361 37 1 2.6784 -2.5876 2.9671 38 1 0.8086 -1.0480 3.4978 39 1 -0.3586 -2.2825 2.9668 40 1 0.0638 -1.3559 6.3659 41 1 -1.2113 -1.6940 5.1481 42 1 -1.9262 -3.2457 6.7736 43 1 -0.2930 -3.3947 7.4861 44 1 -0.9994 -5.3757 5.8600 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000395845434.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:59:59 Heat of formation + Delta-G solvation = -49.751776 kcal Electronic energy + Delta-G solvation = -21535.447207 eV Core-core repulsion = 18486.993312 eV Total energy + Delta-G solvation = -3048.453895 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.31327 -37.47049 -36.21481 -34.35159 -33.05380 -31.89411 -29.20944 -27.19559 -26.61114 -26.38596 -24.15758 -22.19125 -21.98410 -20.39323 -19.56894 -18.91975 -17.22639 -16.62843 -16.27711 -14.86542 -14.67611 -14.66246 -14.29775 -14.08178 -13.64928 -13.60585 -13.27307 -12.89589 -12.58248 -12.39708 -12.21946 -12.09260 -11.80178 -11.58091 -11.51530 -11.15761 -10.89557 -10.76228 -10.65456 -10.48188 -10.34641 -10.32039 -10.11122 -9.96353 -9.45670 -9.16979 -9.07641 -8.96854 -8.24067 -7.04201 -5.85205 -3.83928 2.82208 3.40214 3.47369 3.48858 3.55159 4.35837 4.42645 4.58263 4.65227 4.99345 5.07092 5.28730 5.37031 5.43533 5.50383 5.53736 5.56022 5.64529 5.76602 5.82662 5.95053 6.01210 6.10388 6.14521 6.17677 6.28968 6.34074 6.36919 6.54183 6.65014 6.75378 6.86635 6.96166 6.98120 7.04515 7.20052 7.47268 7.52991 8.02357 8.31115 8.41329 8.45697 8.75345 9.24127 9.79138 11.25672 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.011873 B = 0.007019 C = 0.004751 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2357.705988 B = 3988.149679 C = 5892.280952 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.093 4.093 3 C -0.143 4.143 4 C 0.058 3.942 5 N -0.532 5.532 6 C 0.194 3.806 7 C -0.493 4.493 8 H 0.062 0.938 9 C 0.053 3.947 10 N -0.904 5.904 11 Si 0.894 3.106 12 H -0.290 1.290 13 H -0.277 1.277 14 H -0.278 1.278 15 C 0.052 3.948 16 C -0.096 4.096 17 C -0.122 4.122 18 H 0.104 0.896 19 C -0.130 4.130 20 C 0.103 3.897 21 N -0.742 5.742 22 C 0.516 3.484 23 O -0.503 6.503 24 H 0.037 0.963 25 H 0.072 0.928 26 H 0.039 0.961 27 H 0.076 0.924 28 H 0.048 0.952 29 H 0.049 0.951 30 H 0.047 0.953 31 H 0.057 0.943 32 H 0.019 0.981 33 H -0.015 1.015 34 H 0.033 0.967 35 H 0.259 0.741 36 H 0.108 0.892 37 H 0.011 0.989 38 H 0.065 0.935 39 H 0.070 0.930 40 H 0.087 0.913 41 H 0.084 0.916 42 H 0.075 0.925 43 H 0.067 0.933 44 H 0.407 0.593 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.990 9.166 15.971 20.073 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.112 4.112 3 C -0.201 4.201 4 C -0.071 4.071 5 N -0.256 5.256 6 C 0.069 3.931 7 C -0.532 4.532 8 H 0.081 0.919 9 C -0.147 4.147 10 N -0.545 5.545 11 Si 0.722 3.278 12 H -0.216 1.216 13 H -0.202 1.202 14 H -0.203 1.203 15 C -0.076 4.076 16 C -0.134 4.134 17 C -0.144 4.144 18 H 0.122 0.878 19 C -0.168 4.168 20 C -0.022 4.022 21 N -0.400 5.400 22 C 0.302 3.698 23 O -0.376 6.376 24 H 0.057 0.943 25 H 0.091 0.909 26 H 0.058 0.942 27 H 0.095 0.905 28 H 0.067 0.933 29 H 0.068 0.932 30 H 0.066 0.934 31 H 0.076 0.924 32 H 0.038 0.962 33 H 0.003 0.997 34 H 0.051 0.949 35 H 0.068 0.932 36 H 0.126 0.874 37 H 0.030 0.970 38 H 0.084 0.916 39 H 0.089 0.911 40 H 0.106 0.894 41 H 0.102 0.898 42 H 0.093 0.907 43 H 0.085 0.915 44 H 0.245 0.755 Dipole moment (debyes) X Y Z Total from point charges -8.063 8.759 15.177 19.290 hybrid contribution 0.322 -1.172 0.167 1.227 sum -7.741 7.587 15.344 18.786 Atomic orbital electron populations 1.21649 0.95190 1.02719 0.99278 1.21090 0.96336 0.94313 0.99467 1.21819 1.00555 0.96916 1.00823 1.22130 0.96763 0.91240 0.96966 1.62093 1.55694 1.00189 1.07615 1.19728 0.89995 0.93177 0.90157 1.21151 1.07442 1.04342 1.20256 0.91940 1.24949 0.95094 0.98166 0.96468 1.69949 1.18426 1.38277 1.27838 0.86615 0.79418 0.83694 0.78040 1.21566 1.20240 1.20343 1.22236 0.94431 1.02337 0.88614 1.21508 1.01572 0.98932 0.91387 1.21997 1.00505 0.93170 0.98769 0.87771 1.22693 0.99106 0.96949 0.98011 1.21993 1.01148 0.85236 0.93780 1.46257 1.48811 1.13482 1.31425 1.20956 0.78163 0.90604 0.80124 1.90833 1.55809 1.54321 1.36639 0.94339 0.90902 0.94217 0.90546 0.93251 0.93164 0.93414 0.92416 0.96246 0.99688 0.94879 0.93158 0.87411 0.97031 0.91648 0.91144 0.89426 0.89758 0.90669 0.91470 0.75541 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.13 9.08 37.16 0.34 -1.79 16 2 C -0.09 -1.62 2.96 -90.62 -0.27 -1.89 16 3 C -0.14 -2.01 9.19 37.16 0.34 -1.67 16 4 C 0.06 1.07 4.22 -3.82 -0.02 1.05 16 5 N -0.53 -11.81 3.81 -236.07 -0.90 -12.71 16 6 C 0.19 5.31 4.57 -4.98 -0.02 5.29 16 7 C -0.49 -14.74 8.61 -34.44 -0.30 -15.04 16 8 H 0.06 1.90 7.65 -52.49 -0.40 1.50 16 9 C 0.05 1.60 5.46 -17.82 -0.10 1.51 16 10 N -0.90 -28.16 13.29 55.43 0.74 -27.42 16 11 Si 0.89 23.27 29.54 -169.99 -5.02 18.25 16 12 H -0.29 -7.38 7.11 56.52 0.40 -6.98 16 13 H -0.28 -7.23 7.11 56.52 0.40 -6.83 16 14 H -0.28 -7.09 7.11 56.52 0.40 -6.69 16 15 C 0.05 1.07 4.57 -3.82 -0.02 1.05 16 16 C -0.10 -1.46 4.60 -26.73 -0.12 -1.59 16 17 C -0.12 -1.53 2.98 -90.62 -0.27 -1.80 16 18 H 0.10 1.23 8.14 -51.93 -0.42 0.81 16 19 C -0.13 -1.05 6.70 -25.09 -0.17 -1.22 16 20 C 0.10 0.75 7.78 -3.12 -0.02 0.73 16 21 N -0.74 -8.12 6.24 -59.21 -0.37 -8.49 16 22 C 0.52 7.94 7.83 -10.86 -0.09 7.86 16 23 O -0.50 -10.58 15.45 5.56 0.09 -10.49 16 24 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 25 H 0.07 1.37 7.76 -51.93 -0.40 0.97 16 26 H 0.04 0.57 8.14 -51.93 -0.42 0.14 16 27 H 0.08 1.56 6.65 -51.93 -0.35 1.22 16 28 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 29 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 30 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 31 H 0.06 0.93 5.88 -51.93 -0.31 0.63 16 32 H 0.02 0.38 8.00 -51.93 -0.42 -0.04 16 33 H -0.01 -0.43 8.00 -51.93 -0.42 -0.85 16 34 H 0.03 0.95 6.44 -51.93 -0.33 0.62 16 35 H 0.26 7.66 8.31 -40.82 -0.34 7.32 16 36 H 0.11 2.63 4.87 -51.93 -0.25 2.38 16 37 H 0.01 0.24 8.12 -51.93 -0.42 -0.19 16 38 H 0.07 0.88 6.25 -51.93 -0.32 0.56 16 39 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 40 H 0.09 0.52 8.14 -51.93 -0.42 0.10 16 41 H 0.08 0.68 7.91 -51.93 -0.41 0.27 16 42 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 43 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 44 H 0.41 3.91 8.96 -40.82 -0.37 3.54 16 LS Contribution 344.44 15.07 5.19 5.19 Total: -1.00 -34.48 344.44 -8.75 -43.23 By element: Atomic # 1 Polarization: 7.73 SS G_CDS: -7.76 Total: -0.03 kcal Atomic # 6 Polarization: -6.81 SS G_CDS: -0.71 Total: -7.52 kcal Atomic # 7 Polarization: -48.09 SS G_CDS: -0.53 Total: -48.62 kcal Atomic # 8 Polarization: -10.58 SS G_CDS: 0.09 Total: -10.49 kcal Atomic # 14 Polarization: 23.27 SS G_CDS: -5.02 Total: 18.25 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -34.48 -8.75 -43.23 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000395845434.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.525 kcal (2) G-P(sol) polarization free energy of solvation -34.481 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.005 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.746 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.227 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.752 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds