Wall clock time and date at job start Mon Mar 30 2020 00:59:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53000 * 109.46772 * 2 1 4 4 C 1.53000 * 109.47187 * 119.99226 * 2 1 3 5 5 N 1.46903 * 109.46639 * 65.11259 * 4 2 1 6 6 C 1.46901 * 111.00300 * 75.73761 * 5 4 2 7 7 C 1.50699 * 109.46774 * 199.60495 * 6 5 4 8 8 H 1.07997 * 120.00712 * 355.13248 * 7 6 5 9 9 C 1.37882 * 119.99454 * 175.13815 * 7 6 5 10 10 N 1.31510 * 120.00221 * 359.97438 * 9 7 6 11 11 Si 1.86805 * 119.99687 * 180.02562 * 9 7 6 12 12 H 1.48500 * 109.46803 * 179.97438 * 11 9 7 13 13 H 1.48498 * 109.46764 * 299.99246 * 11 9 7 14 14 H 1.48499 * 109.47313 * 59.99351 * 11 9 7 15 15 C 1.46907 * 110.99638 * 199.68825 * 5 4 2 16 16 C 1.53000 * 109.46808 * 66.04804 * 15 5 4 17 17 C 1.53006 * 109.46718 * 179.97438 * 16 15 5 18 18 H 1.09000 * 110.43427 * 56.08841 * 17 16 15 19 19 C 1.54636 * 110.48415 * 178.76698 * 17 16 15 20 20 C 1.54483 * 101.76099 * 143.47691 * 19 17 16 21 21 N 1.46761 * 105.47334 * 334.58610 * 20 19 17 22 22 C 1.34416 * 111.30535 * 17.01432 * 21 20 19 23 23 O 1.21278 * 124.94397 * 179.55317 * 22 21 20 24 24 H 1.08998 * 109.47324 * 60.00779 * 1 2 3 25 25 H 1.09006 * 109.46542 * 180.02562 * 1 2 3 26 26 H 1.08994 * 109.47456 * 300.00101 * 1 2 3 27 27 H 1.08994 * 109.47456 * 239.99899 * 2 1 3 28 28 H 1.09003 * 109.46992 * 180.02562 * 3 2 1 29 29 H 1.09006 * 109.47144 * 299.99606 * 3 2 1 30 30 H 1.08995 * 109.47495 * 59.99279 * 3 2 1 31 31 H 1.08996 * 109.47355 * 305.11395 * 4 2 1 32 32 H 1.09000 * 109.46948 * 185.10644 * 4 2 1 33 33 H 1.09000 * 109.47080 * 79.60030 * 6 5 4 34 34 H 1.09004 * 109.46807 * 319.60150 * 6 5 4 35 35 H 0.96997 * 120.00356 * 180.02562 * 10 9 7 36 36 H 1.09003 * 109.47065 * 186.04365 * 15 5 4 37 37 H 1.08991 * 109.47202 * 306.04743 * 15 5 4 38 38 H 1.09003 * 109.46949 * 299.99632 * 16 15 5 39 39 H 1.08999 * 109.47799 * 60.00344 * 16 15 5 40 40 H 1.08998 * 110.97111 * 261.59640 * 19 17 16 41 41 H 1.09000 * 110.96989 * 25.36211 * 19 17 16 42 42 H 1.08997 * 110.24257 * 215.58261 * 20 19 17 43 43 H 1.09000 * 110.31666 * 93.62866 * 20 19 17 44 44 H 0.97004 * 124.34453 * 197.03951 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7211 1.2493 5 7 1.6537 -2.1371 1.1893 6 6 2.5011 -2.8744 0.2426 7 6 1.8106 -4.1520 -0.1599 8 1 0.8767 -4.4309 0.3054 9 6 2.3712 -4.9649 -1.1221 10 7 3.5082 -4.6252 -1.6890 11 14 1.5149 -6.5483 -1.6216 12 1 2.3156 -7.2356 -2.6665 13 1 1.3818 -7.4338 -0.4370 14 1 0.1666 -6.2338 -2.1586 15 6 1.6967 -2.7515 2.5231 16 6 0.6233 -2.1186 3.4108 17 6 0.6676 -2.7589 4.7997 18 1 1.6644 -2.6648 5.2305 19 6 -0.3888 -2.1141 5.7269 20 6 -0.8609 -3.3277 6.5581 21 7 -0.6015 -4.5026 5.7178 22 6 0.2580 -4.2133 4.7256 23 8 0.6488 -5.0034 3.8927 24 1 -0.3634 0.5137 -0.8900 25 1 -0.3632 -1.0278 0.0005 26 1 -0.3634 0.5138 0.8899 27 1 1.8934 -0.5138 -0.8899 28 1 3.1300 1.4426 -0.0005 29 1 1.6766 1.9564 -0.8901 30 1 1.6765 1.9564 0.8899 31 1 1.6039 -0.2628 2.1369 32 1 3.1262 -0.6425 1.2962 33 1 3.4544 -3.1100 0.7156 34 1 2.6759 -2.2617 -0.6418 35 1 3.9024 -5.1969 -2.3662 36 1 1.5113 -3.8221 2.4361 37 1 2.6784 -2.5876 2.9671 38 1 0.8086 -1.0480 3.4978 39 1 -0.3586 -2.2825 2.9668 40 1 0.0638 -1.3559 6.3659 41 1 -1.2113 -1.6940 5.1481 42 1 -1.9262 -3.2457 6.7736 43 1 -0.2930 -3.3947 7.4861 44 1 -0.9994 -5.3757 5.8600 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000395845434.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:59:58 Heat of formation + Delta-G solvation = -75.247858 kcal Electronic energy + Delta-G solvation = -21536.552801 eV Core-core repulsion = 18486.993312 eV Total energy + Delta-G solvation = -3049.559488 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.36888 -39.11683 -37.34766 -35.76843 -34.95164 -33.54197 -30.37752 -29.07927 -27.83234 -27.62046 -25.88732 -24.00421 -22.80649 -21.89910 -20.69891 -20.45603 -18.60319 -18.21155 -17.62154 -16.73369 -16.35560 -15.92549 -15.74385 -15.56748 -15.03956 -14.67420 -14.60737 -14.21940 -14.03304 -13.72600 -13.64744 -13.46717 -13.22799 -12.97489 -12.85088 -12.69634 -12.54225 -12.45987 -12.17889 -12.03312 -11.79891 -11.76909 -11.65957 -11.52913 -11.23153 -11.12840 -10.58577 -10.41829 -9.98118 -8.91498 -8.19780 -6.27690 1.33049 1.38164 1.45925 1.66450 2.38736 2.53511 3.09831 3.25814 3.53844 3.66596 3.98371 4.02956 4.20974 4.24833 4.32153 4.39745 4.47164 4.58382 4.70497 4.70932 4.78926 4.84350 4.92456 4.95178 4.98433 5.08697 5.09601 5.13514 5.19712 5.22422 5.28021 5.36896 5.41476 5.48287 5.58432 5.65927 5.71420 6.00282 6.09691 6.14648 6.45977 6.76172 6.87314 7.37781 7.40280 8.90555 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.011873 B = 0.007019 C = 0.004751 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2357.705988 B = 3988.149679 C = 5892.280952 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.095 4.095 3 C -0.134 4.134 4 C 0.058 3.942 5 N -0.535 5.535 6 C 0.213 3.787 7 C -0.511 4.511 8 H 0.049 0.951 9 C 0.001 3.999 10 N -0.935 5.935 11 Si 0.961 3.039 12 H -0.275 1.275 13 H -0.279 1.279 14 H -0.266 1.266 15 C 0.052 3.948 16 C -0.080 4.080 17 C -0.121 4.121 18 H 0.112 0.888 19 C -0.117 4.117 20 C 0.099 3.901 21 N -0.731 5.731 22 C 0.499 3.501 23 O -0.577 6.577 24 H 0.051 0.949 25 H 0.038 0.962 26 H 0.069 0.931 27 H 0.032 0.968 28 H 0.045 0.955 29 H 0.062 0.938 30 H 0.074 0.926 31 H 0.095 0.905 32 H 0.007 0.993 33 H -0.052 1.052 34 H 0.011 0.989 35 H 0.264 0.736 36 H 0.064 0.936 37 H 0.005 0.995 38 H 0.094 0.906 39 H 0.058 0.942 40 H 0.122 0.878 41 H 0.090 0.910 42 H 0.104 0.896 43 H 0.091 0.909 44 H 0.411 0.589 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.016 11.229 18.291 23.684 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.114 4.114 3 C -0.192 4.192 4 C -0.070 4.070 5 N -0.259 5.259 6 C 0.087 3.913 7 C -0.549 4.549 8 H 0.067 0.933 9 C -0.196 4.196 10 N -0.576 5.576 11 Si 0.786 3.214 12 H -0.200 1.200 13 H -0.205 1.205 14 H -0.191 1.191 15 C -0.076 4.076 16 C -0.118 4.118 17 C -0.143 4.143 18 H 0.130 0.870 19 C -0.154 4.154 20 C -0.024 4.024 21 N -0.386 5.386 22 C 0.286 3.714 23 O -0.457 6.457 24 H 0.070 0.930 25 H 0.057 0.943 26 H 0.087 0.913 27 H 0.050 0.950 28 H 0.064 0.936 29 H 0.081 0.919 30 H 0.093 0.907 31 H 0.113 0.887 32 H 0.025 0.975 33 H -0.034 1.034 34 H 0.029 0.971 35 H 0.073 0.927 36 H 0.082 0.918 37 H 0.024 0.976 38 H 0.113 0.887 39 H 0.077 0.923 40 H 0.140 0.860 41 H 0.108 0.892 42 H 0.122 0.878 43 H 0.110 0.890 44 H 0.250 0.750 Dipole moment (debyes) X Y Z Total from point charges -10.132 10.860 17.559 22.998 hybrid contribution 0.954 -1.799 -0.479 2.092 sum -9.178 9.061 17.079 21.402 Atomic orbital electron populations 1.21566 0.93962 1.01136 1.01428 1.21094 0.97378 0.96133 0.96808 1.21735 1.00358 0.94300 1.02792 1.22282 0.96388 0.89030 0.99298 1.62043 1.54148 1.01849 1.07812 1.19314 0.88957 0.92715 0.90324 1.21375 1.07197 1.05782 1.20594 0.93281 1.25824 0.95792 1.01636 0.96334 1.70062 1.19628 1.39650 1.28249 0.85565 0.78859 0.79216 0.77751 1.19958 1.20477 1.19118 1.22203 0.96220 1.00526 0.88624 1.21357 0.98522 1.00180 0.91783 1.22022 1.02742 0.91500 0.98078 0.86967 1.22759 0.97671 0.97672 0.97313 1.22363 1.03437 0.82992 0.93631 1.46358 1.46817 1.15056 1.30374 1.21606 0.78299 0.91506 0.79965 1.90799 1.58716 1.56403 1.39748 0.92964 0.94307 0.91251 0.94963 0.93589 0.91902 0.90691 0.88712 0.97484 1.03401 0.97115 0.92749 0.91761 0.97638 0.88726 0.92306 0.85987 0.89168 0.87810 0.89050 0.75017 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.86 9.08 71.98 0.65 -3.21 16 2 C -0.10 -3.29 2.96 -10.79 -0.03 -3.33 16 3 C -0.13 -3.46 9.19 71.98 0.66 -2.80 16 4 C 0.06 2.14 4.22 86.30 0.36 2.51 16 5 N -0.53 -24.88 3.81 -900.77 -3.43 -28.31 16 6 C 0.21 12.50 4.57 85.56 0.39 12.89 16 7 C -0.51 -32.39 8.61 25.60 0.22 -32.17 16 8 H 0.05 3.18 7.65 -2.91 -0.02 3.15 16 9 C 0.00 0.09 5.46 84.66 0.46 0.55 16 10 N -0.93 -60.48 13.29 21.45 0.28 -60.20 16 11 Si 0.96 49.33 29.54 68.60 2.03 51.36 16 12 H -0.27 -13.34 7.11 99.48 0.71 -12.64 16 13 H -0.28 -14.36 7.11 99.48 0.71 -13.65 16 14 H -0.27 -13.10 7.11 99.48 0.71 -12.40 16 15 C 0.05 2.25 4.57 86.30 0.39 2.64 16 16 C -0.08 -2.38 4.60 30.60 0.14 -2.23 16 17 C -0.12 -2.83 2.98 -10.80 -0.03 -2.86 16 18 H 0.11 2.44 8.14 -2.39 -0.02 2.42 16 19 C -0.12 -1.36 6.70 31.66 0.21 -1.15 16 20 C 0.10 1.02 7.78 86.83 0.68 1.70 16 21 N -0.73 -14.84 6.24 -459.82 -2.87 -17.70 16 22 C 0.50 15.50 7.83 87.90 0.69 16.19 16 23 O -0.58 -25.96 15.45 -3.02 -0.05 -26.00 16 24 H 0.05 1.47 8.14 -2.39 -0.02 1.45 16 25 H 0.04 1.46 7.76 -2.38 -0.02 1.44 16 26 H 0.07 1.74 8.14 -2.39 -0.02 1.72 16 27 H 0.03 1.39 6.65 -2.39 -0.02 1.37 16 28 H 0.04 1.21 8.14 -2.39 -0.02 1.19 16 29 H 0.06 1.47 8.14 -2.38 -0.02 1.45 16 30 H 0.07 1.55 8.14 -2.39 -0.02 1.53 16 31 H 0.09 2.80 5.88 -2.39 -0.01 2.78 16 32 H 0.01 0.27 8.00 -2.39 -0.02 0.25 16 33 H -0.05 -3.32 8.00 -2.39 -0.02 -3.34 16 34 H 0.01 0.67 6.44 -2.38 -0.02 0.66 16 35 H 0.26 16.00 8.31 -92.71 -0.77 15.23 16 36 H 0.06 3.39 4.87 -2.39 -0.01 3.37 16 37 H 0.01 0.23 8.12 -2.39 -0.02 0.21 16 38 H 0.09 2.22 6.25 -2.39 -0.01 2.21 16 39 H 0.06 1.89 8.14 -2.39 -0.02 1.87 16 40 H 0.12 0.69 8.14 -2.39 -0.02 0.67 16 41 H 0.09 1.01 7.91 -2.39 -0.02 0.99 16 42 H 0.10 0.59 8.14 -2.39 -0.02 0.57 16 43 H 0.09 0.61 8.14 -2.39 -0.02 0.59 16 44 H 0.41 7.48 8.96 -92.71 -0.83 6.65 16 Total: -1.00 -83.26 344.44 0.90 -82.37 By element: Atomic # 1 Polarization: 9.63 SS G_CDS: 0.14 Total: 9.77 kcal Atomic # 6 Polarization: -16.07 SS G_CDS: 4.80 Total: -11.27 kcal Atomic # 7 Polarization: -100.20 SS G_CDS: -6.02 Total: -106.22 kcal Atomic # 8 Polarization: -25.96 SS G_CDS: -0.05 Total: -26.00 kcal Atomic # 14 Polarization: 49.33 SS G_CDS: 2.03 Total: 51.36 kcal Total: -83.26 0.90 -82.37 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000395845434.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.118 kcal (2) G-P(sol) polarization free energy of solvation -83.263 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.145 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.897 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.366 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.248 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds