Wall clock time and date at job start Mon Mar 30 2020 01:00:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53001 * 109.46893 * 2 1 4 4 C 1.53001 * 109.47365 * 240.00331 * 2 1 3 5 5 N 1.46897 * 109.47566 * 120.00373 * 2 1 3 6 6 C 1.46893 * 111.00218 * 59.99821 * 5 2 1 7 7 C 1.52997 * 109.47613 * 180.02562 * 6 5 2 8 8 C 1.50702 * 109.47261 * 180.02562 * 7 6 5 9 9 O 1.21273 * 120.00113 * 0.02562 * 8 7 6 10 10 N 1.34782 * 119.99710 * 180.02562 * 8 7 6 11 11 C 1.46499 * 119.99602 * 180.02562 * 10 8 7 12 12 C 1.53006 * 109.46602 * 184.79227 * 11 10 8 13 13 C 1.50694 * 115.55031 * 294.81113 * 12 11 10 14 14 H 1.08008 * 119.99906 * 95.20931 * 13 12 11 15 15 C 1.37882 * 120.00284 * 274.93190 * 13 12 11 16 16 N 1.31509 * 119.99919 * 355.42076 * 15 13 12 17 17 Si 1.86800 * 120.00242 * 175.41794 * 15 13 12 18 18 H 1.48502 * 109.47002 * 0.02562 * 17 15 13 19 19 H 1.48502 * 109.47091 * 119.99801 * 17 15 13 20 20 H 1.48497 * 109.47138 * 240.00628 * 17 15 13 21 21 C 1.53003 * 117.49932 * 80.48439 * 12 11 10 22 22 C 1.52998 * 117.49502 * 149.14583 * 12 11 10 23 23 H 1.08992 * 109.47341 * 299.99139 * 1 2 3 24 24 H 1.09001 * 109.47556 * 60.00032 * 1 2 3 25 25 H 1.09007 * 109.46847 * 179.97438 * 1 2 3 26 26 H 1.09002 * 109.47145 * 179.97438 * 3 2 1 27 27 H 1.09000 * 109.47489 * 300.00127 * 3 2 1 28 28 H 1.09004 * 109.46743 * 60.00605 * 3 2 1 29 29 H 1.08998 * 109.47447 * 299.99712 * 4 2 1 30 30 H 1.09000 * 109.46983 * 59.99893 * 4 2 1 31 31 H 1.09005 * 109.47618 * 179.97438 * 4 2 1 32 32 H 1.00899 * 111.00089 * 183.95926 * 5 2 1 33 33 H 1.09003 * 109.46839 * 60.00425 * 6 5 2 34 34 H 1.09002 * 109.47038 * 300.00578 * 6 5 2 35 35 H 1.09003 * 109.46759 * 60.00269 * 7 6 5 36 36 H 1.08998 * 109.47657 * 300.00660 * 7 6 5 37 37 H 0.97004 * 119.99767 * 359.97438 * 10 8 7 38 38 H 1.08993 * 109.47604 * 64.79661 * 11 10 8 39 39 H 1.09000 * 109.47101 * 304.78675 * 11 10 8 40 40 H 0.97004 * 120.00506 * 184.99920 * 16 15 13 41 41 H 1.08997 * 117.49622 * 214.99831 * 21 12 11 42 42 H 1.09000 * 117.49928 * 0.02562 * 21 12 11 43 43 H 1.08996 * 117.50254 * 359.97148 * 22 12 11 44 44 H 1.09005 * 117.49689 * 144.97447 * 22 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 7 2.0197 -0.6925 1.1993 6 6 1.5488 -2.0835 1.2333 7 6 2.0774 -2.7704 2.4941 8 6 1.5947 -4.1976 2.5285 9 8 0.8970 -4.6236 1.6326 10 7 1.9384 -5.0006 3.5550 11 6 1.4696 -6.3882 3.5881 12 6 1.8968 -7.0394 4.9052 13 6 3.3827 -7.1975 5.1002 14 1 3.9378 -6.4509 5.6489 15 6 4.0327 -8.2980 4.5831 16 7 3.3441 -9.2538 3.9985 17 14 5.8914 -8.4315 4.7129 18 1 6.4261 -7.2344 5.4103 19 1 6.2476 -9.6515 5.4809 20 1 6.4779 -8.5147 3.3512 21 6 1.0485 -6.7484 6.1449 22 6 0.9888 -8.1271 5.4824 23 1 -0.3633 0.5137 0.8900 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 3.1299 1.4426 0.0005 27 1 1.6766 1.9564 -0.8900 28 1 1.6766 1.9563 0.8901 29 1 1.6768 -1.7488 -1.2494 30 1 1.6767 -0.2073 -2.1392 31 1 3.1301 -0.7208 -1.2495 32 1 3.0262 -0.6500 1.2558 33 1 1.9123 -2.6118 0.3518 34 1 0.4589 -2.0980 1.2418 35 1 1.7135 -2.2421 3.3753 36 1 3.1672 -2.7559 2.4860 37 1 2.4967 -4.6600 4.2713 38 1 1.9036 -6.9384 2.7534 39 1 0.3826 -6.4064 3.5096 40 1 3.7916 -10.0608 3.6995 41 1 1.5653 -6.6714 7.1015 42 1 0.1860 -6.0934 6.0221 43 1 0.0870 -8.3786 4.9243 44 1 1.4663 -8.9573 6.0030 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000404097991.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:00:42 Heat of formation + Delta-G solvation = -32.859302 kcal Electronic energy + Delta-G solvation = -20642.045601 eV Core-core repulsion = 17594.324218 eV Total energy + Delta-G solvation = -3047.721382 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -39.30108 -38.27709 -36.67365 -33.26670 -33.15789 -31.97373 -29.13361 -27.62921 -27.45089 -26.23377 -25.14973 -22.51505 -21.14562 -19.73009 -19.44047 -19.12624 -16.74283 -16.16975 -15.89123 -15.44119 -14.90309 -14.80583 -14.60659 -14.31541 -13.94759 -13.73316 -13.17359 -13.00749 -12.58451 -12.44705 -12.23887 -11.93545 -11.91117 -11.74771 -11.57064 -11.47950 -11.23004 -11.02225 -10.96831 -10.91757 -10.72031 -10.53311 -10.24385 -9.61197 -9.27026 -9.04536 -8.51242 -8.48660 -8.26488 -8.08711 -6.09189 -4.19056 3.22125 3.23325 3.32399 3.34129 3.68171 4.26311 4.34189 4.66269 4.75759 4.99082 5.07803 5.18495 5.20617 5.30937 5.37199 5.45085 5.50067 5.58299 5.63126 5.69213 5.73838 5.78218 5.88718 5.98124 6.03566 6.07770 6.19327 6.21025 6.33775 6.47403 6.56484 6.70450 6.87470 6.96722 7.11510 7.28735 7.30883 7.39104 7.52744 7.79585 8.30157 8.32900 8.82242 8.89102 9.48194 10.97984 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.024579 B = 0.003680 C = 0.003421 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1138.911114 B = 7606.373055 C = 8183.325504 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.105 3.895 3 C -0.138 4.138 4 C -0.184 4.184 5 N -0.681 5.681 6 C 0.070 3.930 7 C -0.139 4.139 8 C 0.504 3.496 9 O -0.562 6.562 10 N -0.704 5.704 11 C 0.163 3.837 12 C 0.024 3.976 13 C -0.500 4.500 14 H 0.061 0.939 15 C 0.073 3.927 16 N -0.874 5.874 17 Si 0.890 3.110 18 H -0.272 1.272 19 H -0.284 1.284 20 H -0.284 1.284 21 C -0.211 4.211 22 C -0.143 4.143 23 H 0.062 0.938 24 H 0.055 0.945 25 H 0.059 0.941 26 H 0.052 0.948 27 H 0.058 0.942 28 H 0.063 0.937 29 H 0.063 0.937 30 H 0.059 0.941 31 H 0.053 0.947 32 H 0.338 0.662 33 H 0.042 0.958 34 H 0.082 0.918 35 H 0.097 0.903 36 H 0.088 0.912 37 H 0.401 0.599 38 H 0.066 0.934 39 H 0.039 0.961 40 H 0.261 0.739 41 H 0.078 0.922 42 H 0.064 0.936 43 H 0.063 0.937 44 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.023 16.727 -5.269 17.654 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.014 3.986 3 C -0.195 4.195 4 C -0.243 4.243 5 N -0.312 5.312 6 C -0.059 4.059 7 C -0.179 4.179 8 C 0.289 3.711 9 O -0.442 6.442 10 N -0.352 5.352 11 C 0.040 3.960 12 C 0.023 3.977 13 C -0.537 4.537 14 H 0.079 0.921 15 C -0.131 4.131 16 N -0.511 5.511 17 Si 0.718 3.282 18 H -0.197 1.197 19 H -0.210 1.210 20 H -0.210 1.210 21 C -0.248 4.248 22 C -0.181 4.181 23 H 0.081 0.919 24 H 0.074 0.926 25 H 0.078 0.922 26 H 0.072 0.928 27 H 0.077 0.923 28 H 0.082 0.918 29 H 0.082 0.918 30 H 0.078 0.922 31 H 0.072 0.928 32 H 0.156 0.844 33 H 0.060 0.940 34 H 0.100 0.900 35 H 0.115 0.885 36 H 0.106 0.894 37 H 0.235 0.765 38 H 0.084 0.916 39 H 0.057 0.943 40 H 0.071 0.929 41 H 0.096 0.904 42 H 0.083 0.917 43 H 0.081 0.919 44 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -3.006 16.477 -5.647 17.675 hybrid contribution 1.924 -0.626 -0.271 2.041 sum -1.082 15.850 -5.918 16.954 Atomic orbital electron populations 1.21898 0.93839 1.02409 1.01785 1.20917 0.95682 0.93937 0.88097 1.21821 1.00775 0.94893 1.02057 1.22586 1.01131 1.01728 0.98897 1.60678 1.15989 1.15283 1.39292 1.21738 1.01347 0.86802 0.96053 1.21578 1.02329 0.93350 1.00689 1.20476 0.80787 0.87615 0.82196 1.90649 1.39279 1.76707 1.37546 1.46008 1.52089 1.13078 1.24041 1.20981 0.95820 0.79546 0.99673 1.19051 0.93003 0.97801 0.87852 1.20396 0.90133 1.07795 1.35393 0.92132 1.24998 0.98042 0.95795 0.94311 1.70000 1.35560 1.06653 1.38840 0.86573 0.85791 0.78084 0.77768 1.19683 1.21018 1.20975 1.23016 1.02494 1.00465 0.98817 1.22467 1.00177 0.91811 1.03638 0.91868 0.92554 0.92176 0.92843 0.92317 0.91799 0.91846 0.92237 0.92750 0.84415 0.93991 0.89968 0.88509 0.89400 0.76467 0.91580 0.94256 0.92924 0.90389 0.91728 0.91852 0.89532 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.37 8.24 37.16 0.31 -1.06 16 2 C 0.10 1.00 0.97 -131.60 -0.13 0.87 16 3 C -0.14 -1.09 8.73 37.16 0.32 -0.77 16 4 C -0.18 -1.76 8.23 37.16 0.31 -1.45 16 5 N -0.68 -7.18 6.09 -99.97 -0.61 -7.79 16 6 C 0.07 0.89 4.19 -3.83 -0.02 0.88 16 7 C -0.14 -1.83 5.96 -27.88 -0.17 -2.00 16 8 C 0.50 9.15 7.83 -10.98 -0.09 9.06 16 9 O -0.56 -12.24 15.98 5.56 0.09 -12.15 16 10 N -0.70 -13.44 5.48 -60.29 -0.33 -13.77 16 11 C 0.16 3.69 5.50 -4.04 -0.02 3.67 16 12 C 0.02 0.55 1.47 -155.66 -0.23 0.32 16 13 C -0.50 -12.76 8.59 -34.44 -0.30 -13.06 16 14 H 0.06 1.52 7.82 -52.48 -0.41 1.11 16 15 C 0.07 1.91 5.43 -17.82 -0.10 1.82 16 16 N -0.87 -24.19 12.65 55.43 0.70 -23.48 16 17 Si 0.89 20.42 29.54 -169.99 -5.02 15.40 16 18 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 19 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 20 H -0.28 -6.59 7.11 56.52 0.40 -6.18 16 21 C -0.21 -4.39 9.96 -26.69 -0.27 -4.66 16 22 C -0.14 -3.28 9.14 -26.69 -0.24 -3.53 16 23 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 24 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 25 H 0.06 0.66 6.41 -51.93 -0.33 0.32 16 26 H 0.05 0.40 8.14 -51.93 -0.42 -0.03 16 27 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 28 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 29 H 0.06 0.70 6.40 -51.93 -0.33 0.37 16 30 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 31 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 32 H 0.34 3.21 8.72 -39.29 -0.34 2.87 16 33 H 0.04 0.59 6.26 -51.93 -0.33 0.27 16 34 H 0.08 1.16 6.26 -51.93 -0.33 0.84 16 35 H 0.10 1.15 8.14 -51.93 -0.42 0.72 16 36 H 0.09 1.03 8.14 -51.93 -0.42 0.61 16 37 H 0.40 6.99 8.33 -40.82 -0.34 6.65 16 38 H 0.07 1.71 8.14 -51.93 -0.42 1.29 16 39 H 0.04 0.89 8.09 -51.93 -0.42 0.47 16 40 H 0.26 6.93 8.32 -40.82 -0.34 6.59 16 41 H 0.08 1.60 8.14 -51.93 -0.42 1.17 16 42 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 43 H 0.06 1.39 8.14 -51.93 -0.42 0.97 16 44 H 0.09 2.13 8.14 -51.93 -0.42 1.71 16 LS Contribution 355.90 15.07 5.36 5.36 Total: -1.00 -28.84 355.90 -8.30 -37.15 By element: Atomic # 1 Polarization: 17.07 SS G_CDS: -7.88 Total: 9.19 kcal Atomic # 6 Polarization: -9.29 SS G_CDS: -0.61 Total: -9.91 kcal Atomic # 7 Polarization: -44.80 SS G_CDS: -0.24 Total: -45.04 kcal Atomic # 8 Polarization: -12.24 SS G_CDS: 0.09 Total: -12.15 kcal Atomic # 14 Polarization: 20.42 SS G_CDS: -5.02 Total: 15.40 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -28.84 -8.30 -37.15 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000404097991.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.288 kcal (2) G-P(sol) polarization free energy of solvation -28.844 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.556 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.303 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.147 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.859 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds