Wall clock time and date at job start Mon Mar 30 2020 01:00:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53001 * 109.46893 * 2 1 4 4 C 1.53001 * 109.47365 * 240.00331 * 2 1 3 5 5 N 1.46897 * 109.47566 * 120.00373 * 2 1 3 6 6 C 1.46893 * 111.00218 * 59.99821 * 5 2 1 7 7 C 1.52997 * 109.47613 * 180.02562 * 6 5 2 8 8 C 1.50702 * 109.47261 * 180.02562 * 7 6 5 9 9 O 1.21273 * 120.00113 * 0.02562 * 8 7 6 10 10 N 1.34782 * 119.99710 * 180.02562 * 8 7 6 11 11 C 1.46499 * 119.99602 * 180.02562 * 10 8 7 12 12 C 1.53006 * 109.46602 * 184.79227 * 11 10 8 13 13 C 1.50694 * 115.55031 * 294.81113 * 12 11 10 14 14 H 1.08008 * 119.99906 * 95.20931 * 13 12 11 15 15 C 1.37882 * 120.00284 * 274.93190 * 13 12 11 16 16 N 1.31509 * 119.99919 * 355.42076 * 15 13 12 17 17 Si 1.86800 * 120.00242 * 175.41794 * 15 13 12 18 18 H 1.48502 * 109.47002 * 0.02562 * 17 15 13 19 19 H 1.48502 * 109.47091 * 119.99801 * 17 15 13 20 20 H 1.48497 * 109.47138 * 240.00628 * 17 15 13 21 21 C 1.53003 * 117.49932 * 80.48439 * 12 11 10 22 22 C 1.52998 * 117.49502 * 149.14583 * 12 11 10 23 23 H 1.08992 * 109.47341 * 299.99139 * 1 2 3 24 24 H 1.09001 * 109.47556 * 60.00032 * 1 2 3 25 25 H 1.09007 * 109.46847 * 179.97438 * 1 2 3 26 26 H 1.09002 * 109.47145 * 179.97438 * 3 2 1 27 27 H 1.09000 * 109.47489 * 300.00127 * 3 2 1 28 28 H 1.09004 * 109.46743 * 60.00605 * 3 2 1 29 29 H 1.08998 * 109.47447 * 299.99712 * 4 2 1 30 30 H 1.09000 * 109.46983 * 59.99893 * 4 2 1 31 31 H 1.09005 * 109.47618 * 179.97438 * 4 2 1 32 32 H 1.00899 * 111.00089 * 183.95926 * 5 2 1 33 33 H 1.09003 * 109.46839 * 60.00425 * 6 5 2 34 34 H 1.09002 * 109.47038 * 300.00578 * 6 5 2 35 35 H 1.09003 * 109.46759 * 60.00269 * 7 6 5 36 36 H 1.08998 * 109.47657 * 300.00660 * 7 6 5 37 37 H 0.97004 * 119.99767 * 359.97438 * 10 8 7 38 38 H 1.08993 * 109.47604 * 64.79661 * 11 10 8 39 39 H 1.09000 * 109.47101 * 304.78675 * 11 10 8 40 40 H 0.97004 * 120.00506 * 184.99920 * 16 15 13 41 41 H 1.08997 * 117.49622 * 214.99831 * 21 12 11 42 42 H 1.09000 * 117.49928 * 0.02562 * 21 12 11 43 43 H 1.08996 * 117.50254 * 359.97148 * 22 12 11 44 44 H 1.09005 * 117.49689 * 144.97447 * 22 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 7 2.0197 -0.6925 1.1993 6 6 1.5488 -2.0835 1.2333 7 6 2.0774 -2.7704 2.4941 8 6 1.5947 -4.1976 2.5285 9 8 0.8970 -4.6236 1.6326 10 7 1.9384 -5.0006 3.5550 11 6 1.4696 -6.3882 3.5881 12 6 1.8968 -7.0394 4.9052 13 6 3.3827 -7.1975 5.1002 14 1 3.9378 -6.4509 5.6489 15 6 4.0327 -8.2980 4.5831 16 7 3.3441 -9.2538 3.9985 17 14 5.8914 -8.4315 4.7129 18 1 6.4261 -7.2344 5.4103 19 1 6.2476 -9.6515 5.4809 20 1 6.4779 -8.5147 3.3512 21 6 1.0485 -6.7484 6.1449 22 6 0.9888 -8.1271 5.4824 23 1 -0.3633 0.5137 0.8900 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 3.1299 1.4426 0.0005 27 1 1.6766 1.9564 -0.8900 28 1 1.6766 1.9563 0.8901 29 1 1.6768 -1.7488 -1.2494 30 1 1.6767 -0.2073 -2.1392 31 1 3.1301 -0.7208 -1.2495 32 1 3.0262 -0.6500 1.2558 33 1 1.9123 -2.6118 0.3518 34 1 0.4589 -2.0980 1.2418 35 1 1.7135 -2.2421 3.3753 36 1 3.1672 -2.7559 2.4860 37 1 2.4967 -4.6600 4.2713 38 1 1.9036 -6.9384 2.7534 39 1 0.3826 -6.4064 3.5096 40 1 3.7916 -10.0608 3.6995 41 1 1.5653 -6.6714 7.1015 42 1 0.1860 -6.0934 6.0221 43 1 0.0870 -8.3786 4.9243 44 1 1.4663 -8.9573 6.0030 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000404097991.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:00:42 Heat of formation + Delta-G solvation = -51.618419 kcal Electronic energy + Delta-G solvation = -20642.859057 eV Core-core repulsion = 17594.324218 eV Total energy + Delta-G solvation = -3048.534839 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.74100 -39.24131 -38.42412 -34.92798 -34.17322 -33.94149 -30.23094 -28.38849 -28.20171 -27.94328 -26.95529 -23.67539 -22.90688 -21.36650 -20.89249 -20.18026 -18.34840 -17.72952 -17.03585 -16.74314 -16.61938 -16.15298 -15.93011 -15.49047 -15.18557 -14.92177 -14.63762 -14.29055 -14.02344 -13.70711 -13.46711 -13.14156 -12.93369 -12.91872 -12.85851 -12.83231 -12.60798 -12.40650 -12.31112 -12.06110 -12.02525 -11.81942 -11.54568 -11.41405 -10.94415 -10.88035 -10.44632 -10.03547 -9.82806 -9.36438 -8.09458 -6.23893 1.41343 1.45204 1.54408 1.76030 2.33704 2.43225 3.18505 3.24315 3.53656 3.89635 3.92323 4.02473 4.14435 4.23116 4.26142 4.36462 4.54636 4.64227 4.65407 4.66635 4.72495 4.74773 4.84072 4.91190 4.96898 5.00152 5.00258 5.04781 5.05253 5.10992 5.25437 5.28328 5.37549 5.45793 5.55917 5.61385 5.71369 5.78576 6.08471 6.36748 6.52178 6.78836 6.85560 7.41062 7.46314 8.97704 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.024579 B = 0.003680 C = 0.003421 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1138.911114 B = 7606.373055 C = 8183.325504 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.100 3.900 3 C -0.132 4.132 4 C -0.182 4.182 5 N -0.676 5.676 6 C 0.079 3.921 7 C -0.125 4.125 8 C 0.501 3.499 9 O -0.602 6.602 10 N -0.700 5.700 11 C 0.179 3.821 12 C 0.003 3.997 13 C -0.503 4.503 14 H 0.066 0.934 15 C 0.022 3.978 16 N -0.909 5.909 17 Si 0.951 3.049 18 H -0.259 1.259 19 H -0.285 1.285 20 H -0.289 1.289 21 C -0.176 4.176 22 C -0.156 4.156 23 H 0.061 0.939 24 H 0.070 0.930 25 H 0.040 0.960 26 H 0.060 0.940 27 H 0.070 0.930 28 H 0.062 0.938 29 H 0.041 0.959 30 H 0.070 0.930 31 H 0.059 0.941 32 H 0.347 0.653 33 H 0.024 0.976 34 H 0.066 0.934 35 H 0.120 0.880 36 H 0.111 0.889 37 H 0.412 0.588 38 H 0.023 0.977 39 H 0.035 0.965 40 H 0.258 0.742 41 H 0.086 0.914 42 H 0.087 0.913 43 H 0.067 0.933 44 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.085 19.259 -4.558 19.821 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.010 3.990 3 C -0.190 4.190 4 C -0.240 4.240 5 N -0.308 5.308 6 C -0.051 4.051 7 C -0.165 4.165 8 C 0.289 3.711 9 O -0.485 6.485 10 N -0.349 5.349 11 C 0.054 3.946 12 C 0.003 3.997 13 C -0.541 4.541 14 H 0.084 0.916 15 C -0.178 4.178 16 N -0.547 5.547 17 Si 0.777 3.223 18 H -0.182 1.182 19 H -0.211 1.211 20 H -0.216 1.216 21 C -0.213 4.213 22 C -0.194 4.194 23 H 0.080 0.920 24 H 0.089 0.911 25 H 0.059 0.941 26 H 0.079 0.921 27 H 0.089 0.911 28 H 0.081 0.919 29 H 0.060 0.940 30 H 0.089 0.911 31 H 0.078 0.922 32 H 0.166 0.834 33 H 0.043 0.957 34 H 0.084 0.916 35 H 0.138 0.862 36 H 0.129 0.871 37 H 0.248 0.752 38 H 0.042 0.958 39 H 0.053 0.947 40 H 0.067 0.933 41 H 0.104 0.896 42 H 0.106 0.894 43 H 0.085 0.915 44 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -2.048 19.048 -4.910 19.777 hybrid contribution 1.581 -1.392 -0.515 2.169 sum -0.467 17.656 -5.425 18.477 Atomic orbital electron populations 1.21898 0.94152 1.01357 1.02467 1.21033 0.95532 0.94900 0.87560 1.21775 1.01201 0.93388 1.02614 1.22553 1.01413 1.00556 0.99525 1.60663 1.16653 1.13484 1.39980 1.21538 1.00349 0.88013 0.95205 1.21540 1.03566 0.89598 1.01748 1.21358 0.79644 0.89246 0.80874 1.90635 1.41047 1.77857 1.38916 1.45905 1.52362 1.11752 1.24901 1.20533 0.95165 0.81111 0.97768 1.19082 0.92571 0.98843 0.89244 1.20718 0.91339 1.07484 1.34522 0.91594 1.25733 1.01956 0.95785 0.94351 1.70127 1.37082 1.07170 1.40292 0.85617 0.81062 0.78320 0.77301 1.18248 1.21095 1.21580 1.23000 1.02071 0.98559 0.97716 1.22388 1.00280 0.92209 1.04545 0.91958 0.91125 0.94066 0.92132 0.91147 0.91888 0.93998 0.91083 0.92226 0.83426 0.95748 0.91592 0.86195 0.87082 0.75205 0.95812 0.94655 0.93273 0.89560 0.89439 0.91456 0.91717 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.58 8.24 71.98 0.59 -1.98 16 2 C 0.10 1.74 0.97 3.53 0.00 1.74 16 3 C -0.13 -1.74 8.73 71.98 0.63 -1.11 16 4 C -0.18 -3.23 8.23 71.98 0.59 -2.64 16 5 N -0.68 -12.91 6.09 -470.20 -2.86 -15.78 16 6 C 0.08 1.94 4.19 86.30 0.36 2.31 16 7 C -0.12 -3.03 5.96 29.85 0.18 -2.85 16 8 C 0.50 17.87 7.83 87.66 0.69 18.56 16 9 O -0.60 -26.68 15.98 -3.01 -0.05 -26.73 16 10 N -0.70 -26.15 5.48 -463.06 -2.54 -28.69 16 11 C 0.18 8.18 5.50 86.38 0.48 8.66 16 12 C 0.00 0.15 1.47 -52.93 -0.08 0.08 16 13 C -0.50 -25.39 8.59 25.60 0.22 -25.17 16 14 H 0.07 3.19 7.82 -2.91 -0.02 3.17 16 15 C 0.02 1.17 5.43 84.66 0.46 1.63 16 16 N -0.91 -51.34 12.65 21.45 0.27 -51.07 16 17 Si 0.95 41.82 29.54 68.60 2.03 43.84 16 18 H -0.26 -10.70 7.11 99.48 0.71 -9.99 16 19 H -0.28 -12.47 7.11 99.48 0.71 -11.76 16 20 H -0.29 -12.90 7.11 99.48 0.71 -12.20 16 21 C -0.18 -7.02 9.96 30.62 0.30 -6.72 16 22 C -0.16 -7.19 9.14 30.62 0.28 -6.91 16 23 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 24 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 25 H 0.04 0.90 6.41 -2.38 -0.02 0.88 16 26 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 27 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 28 H 0.06 0.86 8.14 -2.38 -0.02 0.84 16 29 H 0.04 0.92 6.40 -2.39 -0.02 0.91 16 30 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 31 H 0.06 0.98 8.14 -2.38 -0.02 0.96 16 32 H 0.35 5.67 8.72 -89.69 -0.78 4.89 16 33 H 0.02 0.69 6.26 -2.39 -0.01 0.67 16 34 H 0.07 1.86 6.26 -2.39 -0.01 1.84 16 35 H 0.12 2.45 8.14 -2.39 -0.02 2.43 16 36 H 0.11 2.25 8.14 -2.39 -0.02 2.23 16 37 H 0.41 13.56 8.33 -92.71 -0.77 12.79 16 38 H 0.02 1.27 8.14 -2.39 -0.02 1.25 16 39 H 0.04 1.62 8.09 -2.39 -0.02 1.60 16 40 H 0.26 14.05 8.32 -92.71 -0.77 13.28 16 41 H 0.09 3.31 8.14 -2.39 -0.02 3.29 16 42 H 0.09 3.10 8.14 -2.39 -0.02 3.08 16 43 H 0.07 2.99 8.14 -2.39 -0.02 2.97 16 44 H 0.06 3.24 8.14 -2.38 -0.02 3.22 16 Total: -1.00 -62.78 355.90 0.97 -61.81 By element: Atomic # 1 Polarization: 31.61 SS G_CDS: -0.58 Total: 31.03 kcal Atomic # 6 Polarization: -19.11 SS G_CDS: 4.71 Total: -14.41 kcal Atomic # 7 Polarization: -90.41 SS G_CDS: -5.13 Total: -95.54 kcal Atomic # 8 Polarization: -26.68 SS G_CDS: -0.05 Total: -26.73 kcal Atomic # 14 Polarization: 41.82 SS G_CDS: 2.03 Total: 43.84 kcal Total: -62.78 0.97 -61.81 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000404097991.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.189 kcal (2) G-P(sol) polarization free energy of solvation -62.782 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.593 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.975 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.807 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.618 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds