Wall clock time and date at job start Mon Mar 30 2020 00:31:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53006 * 109.47024 * 2 1 4 4 C 1.52991 * 109.47167 * 240.00184 * 2 1 3 5 5 C 1.50702 * 109.46990 * 119.99769 * 2 1 3 6 6 O 1.21277 * 120.00445 * 0.02562 * 5 2 1 7 7 N 1.34779 * 119.99660 * 179.97438 * 5 2 1 8 8 C 1.46502 * 120.00057 * 180.02562 * 7 5 2 9 9 C 1.53001 * 109.47485 * 180.02562 * 8 7 5 10 10 H 1.09005 * 109.49006 * 305.06157 * 9 8 7 11 11 C 1.53039 * 109.49789 * 185.00192 * 9 8 7 12 12 C 1.53044 * 109.53646 * 178.64928 * 11 9 8 13 13 C 1.53189 * 109.31349 * 61.36374 * 12 11 9 14 14 N 1.46926 * 108.77454 * 305.36694 * 13 12 11 15 15 C 1.36940 * 120.62842 * 233.58851 * 14 13 12 16 16 H 1.08003 * 120.00249 * 152.05572 * 15 14 13 17 17 C 1.38817 * 119.99956 * 332.05120 * 15 14 13 18 18 N 1.31620 * 119.99780 * 335.34545 * 17 15 14 19 19 Si 1.86794 * 119.99901 * 155.34425 * 17 15 14 20 20 H 1.48502 * 109.47103 * 179.97438 * 19 17 15 21 21 H 1.48502 * 109.47138 * 299.99706 * 19 17 15 22 22 H 1.48492 * 109.47406 * 60.00148 * 19 17 15 23 23 C 1.46923 * 118.74097 * 53.85812 * 14 13 12 24 24 H 1.09005 * 109.47150 * 299.99851 * 1 2 3 25 25 H 1.08994 * 109.47257 * 60.00249 * 1 2 3 26 26 H 1.08999 * 109.46782 * 180.02562 * 1 2 3 27 27 H 1.08999 * 109.47318 * 179.97438 * 3 2 1 28 28 H 1.08994 * 109.46900 * 299.99970 * 3 2 1 29 29 H 1.09005 * 109.47035 * 60.00078 * 3 2 1 30 30 H 1.08999 * 109.47569 * 299.99506 * 4 2 1 31 31 H 1.09000 * 109.47527 * 60.00098 * 4 2 1 32 32 H 1.09006 * 109.47365 * 180.02562 * 4 2 1 33 33 H 0.97006 * 120.00088 * 0.02562 * 7 5 2 34 34 H 1.08998 * 109.47017 * 59.99995 * 8 7 5 35 35 H 1.09005 * 109.47110 * 300.00442 * 8 7 5 36 36 H 1.09005 * 109.46084 * 58.62677 * 11 9 8 37 37 H 1.08996 * 109.44522 * 298.66075 * 11 9 8 38 38 H 1.09004 * 109.49423 * 301.41100 * 12 11 9 39 39 H 1.08996 * 109.52041 * 181.33284 * 12 11 9 40 40 H 1.08997 * 109.58310 * 185.57933 * 13 12 11 41 41 H 1.08997 * 109.70309 * 65.21893 * 13 12 11 42 42 H 0.96998 * 120.00099 * 354.24047 * 18 17 15 43 43 H 1.09005 * 109.58626 * 65.93043 * 23 14 13 44 44 H 1.09008 * 109.58620 * 186.35134 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 2.0323 -0.7104 1.2305 6 8 1.2443 -1.1717 2.0286 7 7 3.3574 -0.8339 1.4435 8 6 3.8458 -1.5250 2.6394 9 6 5.3758 -1.5249 2.6395 10 1 5.7396 -1.9578 1.7076 11 6 5.8866 -2.3528 3.8209 12 6 7.4167 -2.3812 3.8024 13 6 7.9517 -0.9530 3.9457 14 7 7.3510 -0.1157 2.8984 15 6 8.1400 0.6241 2.0585 16 1 7.7949 0.8618 1.0631 17 6 9.3835 1.0685 2.4865 18 7 9.6202 1.2237 3.7719 19 14 10.7207 1.4464 1.2382 20 1 11.9444 1.9012 1.9460 21 1 11.0273 0.2222 0.4554 22 1 10.2536 2.5165 0.3209 23 6 5.8875 -0.0826 2.7732 24 1 -0.3634 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 3.1300 1.4426 0.0005 28 1 1.6767 1.9563 -0.8900 29 1 1.6766 1.9564 0.8900 30 1 1.6768 -1.7489 -1.2492 31 1 1.6767 -0.2073 -2.1392 32 1 3.1300 -0.7216 -1.2490 33 1 3.9878 -0.4653 0.8049 34 1 3.4822 -2.5525 2.6392 35 1 3.4827 -1.0113 3.5296 36 1 5.5035 -3.3704 3.7438 37 1 5.5430 -1.9051 4.7533 38 1 7.7613 -2.8060 2.8595 39 1 7.7797 -2.9905 4.6301 40 1 9.0359 -0.9561 3.8340 41 1 7.6864 -0.5578 4.9262 42 1 8.9029 1.1085 4.4145 43 1 5.4553 0.3807 3.6602 44 1 5.6093 0.4889 1.8876 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000408148447.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:31:47 Heat of formation + Delta-G solvation = -49.239927 kcal Electronic energy + Delta-G solvation = -21543.059049 eV Core-core repulsion = 18494.627349 eV Total energy + Delta-G solvation = -3048.431700 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.14903 -38.04693 -35.70957 -34.96987 -33.14345 -30.55964 -30.20083 -27.52212 -27.32856 -25.70266 -25.10617 -22.82954 -22.01920 -20.92635 -19.57439 -18.84757 -17.41307 -16.71328 -15.97324 -15.42984 -14.59439 -14.51732 -14.12012 -13.96833 -13.89734 -13.64382 -13.42661 -13.26215 -12.56381 -12.48713 -12.44615 -12.17982 -12.11637 -12.04399 -11.87009 -11.53141 -11.11916 -11.07763 -10.92688 -10.70101 -10.42928 -10.29632 -10.07759 -9.98538 -9.89575 -9.53364 -9.28101 -8.92372 -8.39408 -6.91001 -6.09249 -3.26672 2.71563 3.27768 3.46643 3.50103 3.68184 4.51788 4.55650 4.62288 4.71684 4.97917 5.11851 5.22963 5.35618 5.35961 5.38812 5.42669 5.50393 5.55424 5.64486 5.69370 5.72178 5.75464 5.85185 5.87633 5.95357 6.04767 6.11229 6.13392 6.20458 6.21896 6.44265 6.45831 6.54509 6.66207 6.68138 6.80258 7.08566 7.19413 7.60320 7.95659 8.30317 8.54729 9.08789 9.81648 10.26925 11.18867 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.021102 B = 0.004829 C = 0.004177 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1326.555557 B = 5796.774508 C = 6702.321571 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.088 4.088 3 C -0.142 4.142 4 C -0.141 4.141 5 C 0.520 3.480 6 O -0.548 6.548 7 N -0.722 5.722 8 C 0.127 3.873 9 C -0.117 4.117 10 H 0.073 0.927 11 C -0.100 4.100 12 C -0.136 4.136 13 C 0.149 3.851 14 N -0.599 5.599 15 C -0.351 4.351 16 H 0.055 0.945 17 C -0.023 4.023 18 N -0.915 5.915 19 Si 1.064 2.936 20 H -0.285 1.285 21 H -0.293 1.293 22 H -0.293 1.293 23 C 0.157 3.843 24 H 0.061 0.939 25 H 0.059 0.941 26 H 0.060 0.940 27 H 0.063 0.937 28 H 0.067 0.933 29 H 0.061 0.939 30 H 0.059 0.941 31 H 0.067 0.933 32 H 0.062 0.938 33 H 0.402 0.598 34 H 0.061 0.939 35 H 0.064 0.936 36 H 0.050 0.950 37 H 0.056 0.944 38 H 0.057 0.943 39 H 0.052 0.948 40 H 0.078 0.922 41 H 0.016 0.984 42 H 0.269 0.731 43 H 0.017 0.983 44 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.092 -4.156 -7.338 15.573 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.091 4.091 3 C -0.200 4.200 4 C -0.198 4.198 5 C 0.306 3.694 6 O -0.425 6.425 7 N -0.373 5.373 8 C 0.003 3.997 9 C -0.138 4.138 10 H 0.092 0.908 11 C -0.138 4.138 12 C -0.175 4.175 13 C 0.023 3.977 14 N -0.322 5.322 15 C -0.480 4.480 16 H 0.073 0.927 17 C -0.225 4.225 18 N -0.555 5.555 19 Si 0.894 3.106 20 H -0.211 1.211 21 H -0.221 1.221 22 H -0.220 1.220 23 C 0.030 3.970 24 H 0.080 0.920 25 H 0.078 0.922 26 H 0.079 0.921 27 H 0.082 0.918 28 H 0.086 0.914 29 H 0.080 0.920 30 H 0.078 0.922 31 H 0.086 0.914 32 H 0.081 0.919 33 H 0.237 0.763 34 H 0.080 0.920 35 H 0.083 0.917 36 H 0.068 0.932 37 H 0.075 0.925 38 H 0.076 0.924 39 H 0.070 0.930 40 H 0.097 0.903 41 H 0.034 0.966 42 H 0.080 0.920 43 H 0.035 0.965 44 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -12.022 -4.009 -6.933 14.445 hybrid contribution -1.317 -0.283 -0.118 1.352 sum -13.339 -4.291 -7.052 15.687 Atomic orbital electron populations 1.21643 0.92135 1.02652 1.01903 1.20820 0.97910 0.96590 0.93768 1.21881 1.01663 0.93600 1.02813 1.21868 1.01476 1.00453 0.96026 1.20554 0.82259 0.79395 0.87195 1.90666 1.55491 1.49063 1.47296 1.46099 1.06992 1.58463 1.25794 1.21438 0.94402 0.96586 0.87296 1.22016 0.91884 1.00157 0.99749 0.90822 1.21341 0.96739 0.98271 0.97466 1.22047 0.94706 0.99949 1.00797 1.20966 0.98867 0.87381 0.90519 1.44114 0.99657 1.50079 1.38363 1.19944 1.01910 1.31784 0.94374 0.92737 1.25843 0.99931 0.97001 0.99769 1.70777 1.37022 1.45900 1.01804 0.83541 0.76468 0.76026 0.74607 1.21072 1.22060 1.22003 1.20969 0.85822 0.91779 0.98419 0.91997 0.92158 0.92078 0.91779 0.91392 0.92002 0.92155 0.91378 0.91939 0.76264 0.92039 0.91733 0.93154 0.92486 0.92386 0.92951 0.90319 0.96606 0.91992 0.96540 0.93015 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.28 7.76 37.16 0.29 -0.99 16 2 C -0.09 -0.94 0.87 -155.66 -0.14 -1.07 16 3 C -0.14 -1.38 8.37 37.16 0.31 -1.07 16 4 C -0.14 -1.26 8.37 37.15 0.31 -0.95 16 5 C 0.52 7.35 6.48 -10.98 -0.07 7.28 16 6 O -0.55 -9.66 15.98 5.56 0.09 -9.58 16 7 N -0.72 -9.83 5.12 -60.29 -0.31 -10.14 16 8 C 0.13 1.88 5.07 -4.04 -0.02 1.86 16 9 C -0.12 -1.93 2.38 -90.28 -0.22 -2.14 16 10 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 11 C -0.10 -1.62 5.16 -26.69 -0.14 -1.76 16 12 C -0.14 -2.50 6.08 -26.61 -0.16 -2.66 16 13 C 0.15 3.42 4.69 -3.71 -0.02 3.40 16 14 N -0.60 -14.55 2.84 -172.06 -0.49 -15.04 16 15 C -0.35 -9.52 9.49 -15.06 -0.14 -9.66 16 16 H 0.05 1.47 7.94 -52.48 -0.42 1.05 16 17 C -0.02 -0.65 4.69 -17.43 -0.08 -0.73 16 18 N -0.92 -27.08 12.41 55.49 0.69 -26.39 16 19 Si 1.06 24.72 29.98 -169.99 -5.10 19.62 16 20 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 21 H -0.29 -6.58 7.11 56.52 0.40 -6.17 16 22 H -0.29 -6.51 7.11 56.52 0.40 -6.11 16 23 C 0.16 3.14 5.63 -3.49 -0.02 3.12 16 24 H 0.06 0.69 8.10 -51.93 -0.42 0.27 16 25 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 26 H 0.06 0.66 8.10 -51.93 -0.42 0.24 16 27 H 0.06 0.63 7.56 -51.93 -0.39 0.24 16 28 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 29 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 30 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 31 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 32 H 0.06 0.55 7.56 -51.93 -0.39 0.15 16 33 H 0.40 5.01 6.56 -40.82 -0.27 4.75 16 34 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 35 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 36 H 0.05 0.72 8.14 -51.93 -0.42 0.29 16 37 H 0.06 0.93 8.14 -51.93 -0.42 0.50 16 38 H 0.06 1.10 8.14 -51.93 -0.42 0.67 16 39 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 40 H 0.08 2.04 6.31 -51.93 -0.33 1.71 16 41 H 0.02 0.38 7.85 -51.93 -0.41 -0.03 16 42 H 0.27 8.04 6.69 -40.82 -0.27 7.77 16 43 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 44 H 0.05 1.01 7.16 -51.92 -0.37 0.64 16 LS Contribution 342.39 15.07 5.16 5.16 Total: -1.00 -31.22 342.39 -8.03 -39.25 By element: Atomic # 1 Polarization: 10.46 SS G_CDS: -7.98 Total: 2.48 kcal Atomic # 6 Polarization: -5.29 SS G_CDS: -0.09 Total: -5.38 kcal Atomic # 7 Polarization: -51.45 SS G_CDS: -0.11 Total: -51.56 kcal Atomic # 8 Polarization: -9.66 SS G_CDS: 0.09 Total: -9.58 kcal Atomic # 14 Polarization: 24.72 SS G_CDS: -5.10 Total: 19.62 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -31.22 -8.03 -39.25 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000408148447.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.986 kcal (2) G-P(sol) polarization free energy of solvation -31.220 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.206 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.034 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.254 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.240 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds