Wall clock time and date at job start Mon Mar 30 2020 00:31:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53006 * 109.47024 * 2 1 4 4 C 1.52991 * 109.47167 * 240.00184 * 2 1 3 5 5 C 1.50702 * 109.46990 * 119.99769 * 2 1 3 6 6 O 1.21277 * 120.00445 * 0.02562 * 5 2 1 7 7 N 1.34779 * 119.99660 * 179.97438 * 5 2 1 8 8 C 1.46502 * 120.00057 * 180.02562 * 7 5 2 9 9 C 1.53001 * 109.47485 * 180.02562 * 8 7 5 10 10 H 1.09005 * 109.49006 * 305.06157 * 9 8 7 11 11 C 1.53039 * 109.49789 * 185.00192 * 9 8 7 12 12 C 1.53044 * 109.53646 * 178.64928 * 11 9 8 13 13 C 1.53189 * 109.31349 * 61.36374 * 12 11 9 14 14 N 1.46926 * 108.77454 * 305.36694 * 13 12 11 15 15 C 1.36940 * 120.62842 * 233.58851 * 14 13 12 16 16 H 1.08003 * 120.00249 * 152.05572 * 15 14 13 17 17 C 1.38817 * 119.99956 * 332.05120 * 15 14 13 18 18 N 1.31620 * 119.99780 * 335.34545 * 17 15 14 19 19 Si 1.86794 * 119.99901 * 155.34425 * 17 15 14 20 20 H 1.48502 * 109.47103 * 179.97438 * 19 17 15 21 21 H 1.48502 * 109.47138 * 299.99706 * 19 17 15 22 22 H 1.48492 * 109.47406 * 60.00148 * 19 17 15 23 23 C 1.46923 * 118.74097 * 53.85812 * 14 13 12 24 24 H 1.09005 * 109.47150 * 299.99851 * 1 2 3 25 25 H 1.08994 * 109.47257 * 60.00249 * 1 2 3 26 26 H 1.08999 * 109.46782 * 180.02562 * 1 2 3 27 27 H 1.08999 * 109.47318 * 179.97438 * 3 2 1 28 28 H 1.08994 * 109.46900 * 299.99970 * 3 2 1 29 29 H 1.09005 * 109.47035 * 60.00078 * 3 2 1 30 30 H 1.08999 * 109.47569 * 299.99506 * 4 2 1 31 31 H 1.09000 * 109.47527 * 60.00098 * 4 2 1 32 32 H 1.09006 * 109.47365 * 180.02562 * 4 2 1 33 33 H 0.97006 * 120.00088 * 0.02562 * 7 5 2 34 34 H 1.08998 * 109.47017 * 59.99995 * 8 7 5 35 35 H 1.09005 * 109.47110 * 300.00442 * 8 7 5 36 36 H 1.09005 * 109.46084 * 58.62677 * 11 9 8 37 37 H 1.08996 * 109.44522 * 298.66075 * 11 9 8 38 38 H 1.09004 * 109.49423 * 301.41100 * 12 11 9 39 39 H 1.08996 * 109.52041 * 181.33284 * 12 11 9 40 40 H 1.08997 * 109.58310 * 185.57933 * 13 12 11 41 41 H 1.08997 * 109.70309 * 65.21893 * 13 12 11 42 42 H 0.96998 * 120.00099 * 354.24047 * 18 17 15 43 43 H 1.09005 * 109.58626 * 65.93043 * 23 14 13 44 44 H 1.09008 * 109.58620 * 186.35134 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 2.0323 -0.7104 1.2305 6 8 1.2443 -1.1717 2.0286 7 7 3.3574 -0.8339 1.4435 8 6 3.8458 -1.5250 2.6394 9 6 5.3758 -1.5249 2.6395 10 1 5.7396 -1.9578 1.7076 11 6 5.8866 -2.3528 3.8209 12 6 7.4167 -2.3812 3.8024 13 6 7.9517 -0.9530 3.9457 14 7 7.3510 -0.1157 2.8984 15 6 8.1400 0.6241 2.0585 16 1 7.7949 0.8618 1.0631 17 6 9.3835 1.0685 2.4865 18 7 9.6202 1.2237 3.7719 19 14 10.7207 1.4464 1.2382 20 1 11.9444 1.9012 1.9460 21 1 11.0273 0.2222 0.4554 22 1 10.2536 2.5165 0.3209 23 6 5.8875 -0.0826 2.7732 24 1 -0.3634 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 3.1300 1.4426 0.0005 28 1 1.6767 1.9563 -0.8900 29 1 1.6766 1.9564 0.8900 30 1 1.6768 -1.7489 -1.2492 31 1 1.6767 -0.2073 -2.1392 32 1 3.1300 -0.7216 -1.2490 33 1 3.9878 -0.4653 0.8049 34 1 3.4822 -2.5525 2.6392 35 1 3.4827 -1.0113 3.5296 36 1 5.5035 -3.3704 3.7438 37 1 5.5430 -1.9051 4.7533 38 1 7.7613 -2.8060 2.8595 39 1 7.7797 -2.9905 4.6301 40 1 9.0359 -0.9561 3.8340 41 1 7.6864 -0.5578 4.9262 42 1 8.9029 1.1085 4.4145 43 1 5.4553 0.3807 3.6602 44 1 5.6093 0.4889 1.8876 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000408148447.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:31:47 Heat of formation + Delta-G solvation = -68.214563 kcal Electronic energy + Delta-G solvation = -21543.881851 eV Core-core repulsion = 18494.627349 eV Total energy + Delta-G solvation = -3049.254502 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.26307 -39.60720 -36.71931 -36.41116 -34.77870 -32.24405 -31.88957 -28.24554 -28.16378 -27.06490 -27.00638 -24.15883 -23.57413 -22.36383 -21.00954 -20.08565 -19.36061 -17.73491 -17.13729 -16.65836 -16.25318 -16.00596 -15.50269 -15.42528 -15.24307 -14.91361 -14.78832 -14.56601 -14.02043 -13.74110 -13.60936 -13.34337 -13.25583 -13.07616 -12.88902 -12.69388 -12.64574 -12.42350 -12.01298 -11.92115 -11.91333 -11.87448 -11.76270 -11.71005 -11.48561 -11.11530 -10.68645 -10.45554 -10.10675 -8.93164 -8.23357 -5.39983 1.59528 1.61346 1.66890 1.85365 2.19940 2.66583 3.22290 3.46827 3.60457 3.81787 3.86185 3.89031 3.93577 3.96234 4.23918 4.27028 4.43998 4.47311 4.63270 4.69041 4.70539 4.75353 4.77722 4.80876 4.83137 4.92564 4.93723 4.97983 5.00740 5.09838 5.18351 5.21468 5.23908 5.28130 5.30793 5.33347 5.44578 5.53751 5.84103 6.39259 6.50611 7.05904 7.19817 7.78234 8.23641 9.01124 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.021102 B = 0.004829 C = 0.004177 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1326.555557 B = 5796.774508 C = 6702.321571 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.084 4.084 3 C -0.140 4.140 4 C -0.138 4.138 5 C 0.515 3.485 6 O -0.587 6.587 7 N -0.718 5.718 8 C 0.136 3.864 9 C -0.099 4.099 10 H 0.076 0.924 11 C -0.098 4.098 12 C -0.125 4.125 13 C 0.152 3.848 14 N -0.617 5.617 15 C -0.354 4.354 16 H 0.056 0.944 17 C -0.077 4.077 18 N -0.945 5.945 19 Si 1.114 2.886 20 H -0.295 1.295 21 H -0.279 1.279 22 H -0.274 1.274 23 C 0.156 3.844 24 H 0.046 0.954 25 H 0.087 0.913 26 H 0.051 0.949 27 H 0.061 0.939 28 H 0.091 0.909 29 H 0.049 0.951 30 H 0.056 0.944 31 H 0.090 0.910 32 H 0.064 0.936 33 H 0.409 0.591 34 H 0.071 0.929 35 H 0.053 0.947 36 H 0.083 0.917 37 H 0.056 0.944 38 H 0.055 0.945 39 H 0.074 0.926 40 H 0.043 0.957 41 H 0.000 1.000 42 H 0.253 0.747 43 H 0.005 0.995 44 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.932 -4.872 -9.413 17.505 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.087 4.087 3 C -0.198 4.198 4 C -0.195 4.195 5 C 0.303 3.697 6 O -0.467 6.467 7 N -0.370 5.370 8 C 0.012 3.988 9 C -0.119 4.119 10 H 0.094 0.906 11 C -0.136 4.136 12 C -0.164 4.164 13 C 0.026 3.974 14 N -0.341 5.341 15 C -0.483 4.483 16 H 0.074 0.926 17 C -0.273 4.273 18 N -0.587 5.587 19 Si 0.938 3.062 20 H -0.221 1.221 21 H -0.205 1.205 22 H -0.200 1.200 23 C 0.030 3.970 24 H 0.065 0.935 25 H 0.106 0.894 26 H 0.070 0.930 27 H 0.080 0.920 28 H 0.110 0.890 29 H 0.068 0.932 30 H 0.075 0.925 31 H 0.109 0.891 32 H 0.083 0.917 33 H 0.245 0.755 34 H 0.089 0.911 35 H 0.072 0.928 36 H 0.101 0.899 37 H 0.074 0.926 38 H 0.074 0.926 39 H 0.092 0.908 40 H 0.061 0.939 41 H 0.018 0.982 42 H 0.063 0.937 43 H 0.023 0.977 44 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -12.888 -4.736 -9.031 16.434 hybrid contribution -1.114 -0.037 0.559 1.247 sum -14.001 -4.773 -8.472 17.047 Atomic orbital electron populations 1.21651 0.91772 1.02232 1.02520 1.20870 0.98166 0.96881 0.92767 1.21893 1.01483 0.92932 1.03473 1.21877 1.01614 1.00279 0.95758 1.21250 0.81842 0.78777 0.87809 1.90646 1.56341 1.50818 1.48891 1.46081 1.07246 1.58153 1.25476 1.21250 0.92938 0.97132 0.87486 1.21775 0.92789 0.97320 1.00062 0.90602 1.21349 0.94923 1.00092 0.97215 1.21907 0.96282 0.96628 1.01554 1.20855 0.96936 0.90143 0.89451 1.44371 1.01268 1.50247 1.38208 1.20247 1.02331 1.31052 0.94715 0.92646 1.27189 1.02478 0.97128 1.00473 1.70903 1.36425 1.48781 1.02593 0.82871 0.73574 0.76843 0.72872 1.22141 1.20496 1.19981 1.21079 0.83549 0.94430 0.97917 0.93490 0.89403 0.93034 0.92033 0.88968 0.93153 0.92524 0.89105 0.91727 0.75466 0.91075 0.92837 0.89873 0.92557 0.92614 0.90772 0.93874 0.98241 0.93750 0.97745 0.92761 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.33 7.76 71.98 0.56 -1.77 16 2 C -0.08 -1.63 0.87 -52.93 -0.05 -1.68 16 3 C -0.14 -2.43 8.37 71.98 0.60 -1.83 16 4 C -0.14 -2.08 8.37 71.98 0.60 -1.48 16 5 C 0.52 14.01 6.48 87.66 0.57 14.58 16 6 O -0.59 -20.47 15.98 -3.02 -0.05 -20.52 16 7 N -0.72 -18.55 5.12 -463.05 -2.37 -20.92 16 8 C 0.14 3.82 5.07 86.38 0.44 4.26 16 9 C -0.10 -3.08 2.38 -10.57 -0.03 -3.11 16 10 H 0.08 2.39 8.14 -2.38 -0.02 2.37 16 11 C -0.10 -2.95 5.16 30.62 0.16 -2.80 16 12 C -0.12 -4.43 6.08 30.67 0.19 -4.24 16 13 C 0.15 7.11 4.69 86.36 0.40 7.52 16 14 N -0.62 -30.20 2.84 -698.26 -1.99 -32.19 16 15 C -0.35 -19.27 9.49 84.03 0.80 -18.47 16 16 H 0.06 2.96 7.94 -2.91 -0.02 2.93 16 17 C -0.08 -4.29 4.69 84.86 0.40 -3.90 16 18 N -0.94 -57.51 12.41 21.65 0.27 -57.24 16 19 Si 1.11 49.89 29.98 68.60 2.06 51.95 16 20 H -0.30 -13.61 7.11 99.48 0.71 -12.91 16 21 H -0.28 -11.72 7.11 99.48 0.71 -11.01 16 22 H -0.27 -11.33 7.11 99.48 0.71 -10.63 16 23 C 0.16 6.19 5.63 86.51 0.49 6.68 16 24 H 0.05 1.01 8.10 -2.38 -0.02 0.99 16 25 H 0.09 1.14 8.14 -2.39 -0.02 1.12 16 26 H 0.05 1.06 8.10 -2.39 -0.02 1.04 16 27 H 0.06 1.09 7.56 -2.39 -0.02 1.08 16 28 H 0.09 1.16 8.14 -2.39 -0.02 1.14 16 29 H 0.05 0.98 8.14 -2.38 -0.02 0.96 16 30 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 31 H 0.09 0.98 8.14 -2.39 -0.02 0.96 16 32 H 0.06 0.95 7.56 -2.38 -0.02 0.93 16 33 H 0.41 9.50 6.56 -92.70 -0.61 8.89 16 34 H 0.07 1.91 8.14 -2.39 -0.02 1.90 16 35 H 0.05 1.64 8.14 -2.38 -0.02 1.62 16 36 H 0.08 2.05 8.14 -2.38 -0.02 2.03 16 37 H 0.06 1.73 8.14 -2.39 -0.02 1.71 16 38 H 0.06 2.01 8.14 -2.39 -0.02 1.99 16 39 H 0.07 2.31 8.14 -2.39 -0.02 2.29 16 40 H 0.04 2.30 6.31 -2.39 -0.02 2.29 16 41 H 0.00 -0.02 7.85 -2.39 -0.02 -0.04 16 42 H 0.25 15.76 6.69 -92.71 -0.62 15.14 16 43 H 0.00 0.19 8.14 -2.38 -0.02 0.18 16 44 H 0.05 2.09 7.16 -2.38 -0.02 2.07 16 Total: -1.00 -68.76 342.39 3.54 -65.22 By element: Atomic # 1 Polarization: 19.44 SS G_CDS: 0.49 Total: 19.93 kcal Atomic # 6 Polarization: -11.36 SS G_CDS: 5.13 Total: -6.23 kcal Atomic # 7 Polarization: -106.26 SS G_CDS: -4.09 Total: -110.35 kcal Atomic # 8 Polarization: -20.47 SS G_CDS: -0.05 Total: -20.52 kcal Atomic # 14 Polarization: 49.89 SS G_CDS: 2.06 Total: 51.95 kcal Total: -68.76 3.54 -65.22 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000408148447.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.996 kcal (2) G-P(sol) polarization free energy of solvation -68.763 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.758 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.544 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.219 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.215 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds