Wall clock time and date at job start Mon Mar 30 2020 00:37:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52999 * 109.47109 * 2 1 4 4 C 1.52996 * 109.47229 * 120.00484 * 2 1 3 5 5 H 1.08997 * 109.87113 * 177.98007 * 4 2 1 6 6 C 1.54331 * 109.88133 * 298.99023 * 4 2 1 7 7 C 1.55158 * 102.94095 * 141.76600 * 6 4 2 8 8 C 1.54913 * 101.58168 * 324.50100 * 7 6 4 9 9 N 1.47016 * 109.88486 * 56.95942 * 4 2 1 10 10 C 1.34774 * 125.64668 * 61.43591 * 9 4 2 11 11 O 1.21275 * 120.00487 * 354.98036 * 10 9 4 12 12 C 1.50708 * 119.99639 * 174.98074 * 10 9 4 13 13 H 1.08991 * 109.47126 * 40.00079 * 12 10 9 14 14 N 1.46900 * 109.46857 * 160.00185 * 12 10 9 15 15 C 1.53005 * 109.47043 * 279.99743 * 12 10 9 16 16 C 1.53003 * 109.46854 * 175.00288 * 15 12 10 17 17 C 1.50694 * 109.46956 * 180.02562 * 16 15 12 18 18 H 1.08004 * 120.00156 * 0.02562 * 17 16 15 19 19 C 1.37877 * 120.00220 * 179.97438 * 17 16 15 20 20 N 1.31516 * 119.99717 * 0.02562 * 19 17 16 21 21 Si 1.86800 * 120.00108 * 180.02562 * 19 17 16 22 22 H 1.48498 * 109.47201 * 359.97438 * 21 19 17 23 23 H 1.48498 * 109.47084 * 119.99898 * 21 19 17 24 24 H 1.48500 * 109.46953 * 239.99997 * 21 19 17 25 25 H 1.08994 * 109.47275 * 65.89273 * 1 2 3 26 26 H 1.08999 * 109.47354 * 185.89577 * 1 2 3 27 27 H 1.09000 * 109.46758 * 305.89358 * 1 2 3 28 28 H 1.09005 * 109.46672 * 240.00466 * 2 1 3 29 29 H 1.08993 * 109.47293 * 184.64383 * 3 2 1 30 30 H 1.08999 * 109.47284 * 304.64482 * 3 2 1 31 31 H 1.08998 * 109.46947 * 64.64215 * 3 2 1 32 32 H 1.08994 * 110.71801 * 260.12850 * 6 4 2 33 33 H 1.09001 * 110.71920 * 23.40324 * 6 4 2 34 34 H 1.08996 * 111.00137 * 82.57210 * 7 6 4 35 35 H 1.09002 * 111.00278 * 206.38440 * 7 6 4 36 36 H 1.08998 * 110.36670 * 155.85076 * 8 7 6 37 37 H 1.09000 * 110.36199 * 278.06037 * 8 7 6 38 38 H 1.00903 * 110.99972 * 296.04243 * 14 12 10 39 39 H 1.00902 * 111.00255 * 59.99950 * 14 12 10 40 40 H 1.08994 * 109.46891 * 295.00381 * 15 12 10 41 41 H 1.08998 * 109.46591 * 55.00525 * 15 12 10 42 42 H 1.09003 * 109.46733 * 300.00155 * 16 15 12 43 43 H 1.09004 * 109.47041 * 60.00033 * 16 15 12 44 44 H 0.97004 * 119.99517 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2491 5 1 3.1294 -0.7565 1.2378 6 6 1.5518 0.0133 2.5155 7 6 1.2271 -1.1505 3.4889 8 6 0.6770 -2.2243 2.5173 9 7 1.4961 -2.0864 1.2954 10 6 1.7099 -3.0487 0.3765 11 8 2.3275 -2.7942 -0.6358 12 6 1.1816 -4.4413 0.6068 13 1 0.1870 -4.3840 1.0487 14 7 1.1076 -5.1550 -0.6750 15 6 2.1188 -5.1919 1.5551 16 6 1.5193 -6.5598 1.8875 17 6 2.4419 -7.2989 2.8220 18 1 3.3636 -6.8388 3.1468 19 6 2.1091 -8.5620 3.2634 20 7 0.9866 -9.1220 2.8684 21 14 3.2526 -9.4778 4.4224 22 1 4.4409 -8.6361 4.7130 23 1 2.5370 -9.7788 5.6883 24 1 3.6891 -10.7469 3.7866 25 1 -0.3633 0.4197 -0.9380 26 1 -0.3634 -1.0222 0.1056 27 1 -0.3633 0.6025 0.8325 28 1 1.8933 -0.5138 -0.8901 29 1 3.1268 1.4437 -0.0832 30 1 1.6104 1.9798 -0.8454 31 1 1.7462 1.9317 0.9286 32 1 2.3401 0.6471 2.9216 33 1 0.6572 0.5980 2.3014 34 1 2.1281 -1.5028 3.9910 35 1 0.4691 -0.8536 4.2138 36 1 0.7973 -3.2198 2.9445 37 1 -0.3725 -2.0322 2.2944 38 1 0.4454 -4.7149 -1.2963 39 1 2.0180 -5.2214 -1.1051 40 1 3.0885 -5.3269 1.0761 41 1 2.2436 -4.6171 2.4728 42 1 0.5495 -6.4247 2.3665 43 1 1.3944 -7.1345 0.9698 44 1 0.7524 -10.0105 3.1792 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000424091485.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:37:22 Heat of formation + Delta-G solvation = -58.855335 kcal Electronic energy + Delta-G solvation = -21651.558844 eV Core-core repulsion = 18602.710189 eV Total energy + Delta-G solvation = -3048.848655 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.48334 -38.02250 -35.26884 -34.52975 -32.77134 -31.58941 -30.07338 -28.29739 -27.28899 -26.38408 -24.42839 -22.76939 -22.09453 -20.52135 -19.62821 -18.50077 -17.03087 -16.61823 -16.19020 -15.46005 -15.41720 -14.83747 -14.48640 -14.23387 -13.74967 -13.63528 -13.44900 -13.13490 -12.92497 -12.36750 -12.29086 -12.16015 -11.95576 -11.89155 -11.55816 -11.40257 -11.29559 -11.09814 -10.90167 -10.73659 -10.63892 -10.50137 -10.42136 -9.96645 -9.76688 -9.34883 -8.97658 -8.53795 -8.33088 -8.17548 -5.93348 -3.95341 2.82904 3.09940 3.34031 3.41706 3.45619 4.34788 4.46091 4.50776 4.66564 4.90629 4.91633 4.96969 4.98773 5.11908 5.25275 5.31127 5.42313 5.44536 5.48357 5.56766 5.59424 5.69501 5.70953 5.77085 5.80814 5.86464 5.92700 6.00014 6.02523 6.16809 6.24622 6.43681 6.52663 6.69247 7.10401 7.43984 7.66932 7.77090 7.82367 7.97040 8.14046 8.35627 8.49409 9.12842 9.67855 11.17582 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.028217 B = 0.004344 C = 0.004040 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 992.059915 B = 6443.989898 C = 6929.613663 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.109 4.109 3 C -0.144 4.144 4 C 0.140 3.860 5 H 0.070 0.930 6 C -0.130 4.130 7 C -0.133 4.133 8 C 0.094 3.906 9 N -0.611 5.611 10 C 0.500 3.500 11 O -0.552 6.552 12 C 0.082 3.918 13 H 0.095 0.905 14 N -0.807 5.807 15 C -0.094 4.094 16 C 0.032 3.968 17 C -0.521 4.521 18 H 0.052 0.948 19 C 0.058 3.942 20 N -0.892 5.892 21 Si 0.888 3.112 22 H -0.274 1.274 23 H -0.285 1.285 24 H -0.284 1.284 25 H 0.050 0.950 26 H 0.054 0.946 27 H 0.054 0.946 28 H 0.084 0.916 29 H 0.053 0.947 30 H 0.054 0.946 31 H 0.056 0.944 32 H 0.077 0.923 33 H 0.080 0.920 34 H 0.078 0.922 35 H 0.083 0.917 36 H 0.089 0.911 37 H 0.068 0.932 38 H 0.333 0.667 39 H 0.347 0.653 40 H 0.052 0.948 41 H 0.053 0.947 42 H 0.012 0.988 43 H 0.035 0.965 44 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.185 20.721 -1.549 20.893 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.128 4.128 3 C -0.202 4.202 4 C 0.036 3.964 5 H 0.088 0.912 6 C -0.168 4.168 7 C -0.171 4.171 8 C -0.029 4.029 9 N -0.346 5.346 10 C 0.288 3.712 11 O -0.430 6.430 12 C -0.034 4.034 13 H 0.113 0.887 14 N -0.335 5.335 15 C -0.132 4.132 16 C -0.005 4.005 17 C -0.559 4.559 18 H 0.070 0.930 19 C -0.143 4.143 20 N -0.532 5.532 21 Si 0.716 3.284 22 H -0.199 1.199 23 H -0.211 1.211 24 H -0.211 1.211 25 H 0.069 0.931 26 H 0.073 0.927 27 H 0.073 0.927 28 H 0.102 0.898 29 H 0.072 0.928 30 H 0.073 0.927 31 H 0.075 0.925 32 H 0.096 0.904 33 H 0.099 0.901 34 H 0.096 0.904 35 H 0.102 0.898 36 H 0.107 0.893 37 H 0.086 0.914 38 H 0.145 0.855 39 H 0.161 0.839 40 H 0.071 0.929 41 H 0.071 0.929 42 H 0.031 0.969 43 H 0.053 0.947 44 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -2.195 19.965 -1.713 20.158 hybrid contribution 0.923 0.377 0.291 1.039 sum -1.272 20.342 -1.422 20.431 Atomic orbital electron populations 1.21803 0.95213 1.01784 1.01055 1.21447 0.96181 0.95993 0.99182 1.21812 1.00981 0.95664 1.01698 1.21577 0.97984 0.82032 0.94829 0.91189 1.22787 1.02046 0.97611 0.94379 1.22772 1.02056 0.95108 0.97178 1.22494 0.94673 1.01069 0.84692 1.48739 1.50635 1.11514 1.23693 1.22436 0.79354 0.87639 0.81769 1.90620 1.42299 1.82573 1.27537 1.21805 1.01439 0.86256 0.93899 0.88731 1.59018 1.14520 1.54321 1.05611 1.21647 0.97111 0.99164 0.95312 1.19015 0.95289 0.89089 0.97140 1.21313 1.06022 1.00770 1.27837 0.92975 1.24989 0.95208 0.97554 0.96561 1.69989 1.22923 1.15449 1.44811 0.86604 0.81049 0.79902 0.80829 1.19868 1.21100 1.21056 0.93130 0.92699 0.92735 0.89781 0.92766 0.92684 0.92525 0.90398 0.90116 0.90370 0.89842 0.89256 0.91420 0.85542 0.83872 0.92944 0.92860 0.96933 0.94686 0.93171 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.45 8.75 37.16 0.33 -1.13 16 2 C -0.11 -1.22 2.62 -90.62 -0.24 -1.46 16 3 C -0.14 -1.26 9.03 37.16 0.34 -0.93 16 4 C 0.14 1.63 2.72 -66.95 -0.18 1.45 16 5 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 6 C -0.13 -1.12 5.09 -24.89 -0.13 -1.25 16 7 C -0.13 -1.19 7.09 -24.58 -0.17 -1.37 16 8 C 0.09 1.06 6.41 -2.35 -0.02 1.04 16 9 N -0.61 -8.27 2.11 -162.77 -0.34 -8.61 16 10 C 0.50 8.26 6.91 -10.98 -0.08 8.19 16 11 O -0.55 -10.45 15.14 5.56 0.08 -10.36 16 12 C 0.08 1.42 2.42 -68.86 -0.17 1.26 16 13 H 0.09 1.58 7.53 -51.93 -0.39 1.19 16 14 N -0.81 -14.06 8.44 -5.65 -0.05 -14.11 16 15 C -0.09 -1.94 4.65 -26.73 -0.12 -2.07 16 16 C 0.03 0.82 4.86 -27.88 -0.14 0.68 16 17 C -0.52 -14.77 9.11 -34.44 -0.31 -15.09 16 18 H 0.05 1.45 7.74 -52.48 -0.41 1.04 16 19 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 20 N -0.89 -26.93 13.29 55.43 0.74 -26.20 16 21 Si 0.89 21.76 29.54 -169.99 -5.02 16.74 16 22 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 23 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 24 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 25 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 26 H 0.05 0.65 7.33 -51.93 -0.38 0.26 16 27 H 0.05 0.47 6.35 -51.93 -0.33 0.14 16 28 H 0.08 1.21 6.77 -51.93 -0.35 0.85 16 29 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 30 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.06 0.42 6.85 -51.93 -0.36 0.07 16 32 H 0.08 0.58 8.14 -51.93 -0.42 0.15 16 33 H 0.08 0.62 5.60 -51.93 -0.29 0.33 16 34 H 0.08 0.75 8.14 -51.93 -0.42 0.32 16 35 H 0.08 0.60 8.14 -51.93 -0.42 0.17 16 36 H 0.09 1.13 6.31 -51.93 -0.33 0.81 16 37 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 38 H 0.33 5.07 9.06 -39.29 -0.36 4.72 16 39 H 0.35 6.15 8.58 -39.29 -0.34 5.81 16 40 H 0.05 1.14 8.14 -51.93 -0.42 0.71 16 41 H 0.05 1.05 6.99 -51.93 -0.36 0.68 16 42 H 0.01 0.33 8.14 -51.93 -0.42 -0.09 16 43 H 0.03 0.98 7.75 -51.93 -0.40 0.58 16 44 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 LS Contribution 341.53 15.07 5.15 5.15 Total: -1.00 -31.90 341.53 -8.09 -39.98 By element: Atomic # 1 Polarization: 14.16 SS G_CDS: -7.65 Total: 6.50 kcal Atomic # 6 Polarization: -8.10 SS G_CDS: -0.99 Total: -9.09 kcal Atomic # 7 Polarization: -49.26 SS G_CDS: 0.35 Total: -48.92 kcal Atomic # 8 Polarization: -10.45 SS G_CDS: 0.08 Total: -10.36 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -5.02 Total: 16.74 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -31.90 -8.09 -39.98 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424091485.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.872 kcal (2) G-P(sol) polarization free energy of solvation -31.896 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.769 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.087 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.983 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.855 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds