Wall clock time and date at job start Mon Mar 30 2020 00:37:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52999 * 109.47109 * 2 1 4 4 C 1.52996 * 109.47229 * 120.00484 * 2 1 3 5 5 H 1.08997 * 109.87113 * 177.98007 * 4 2 1 6 6 C 1.54331 * 109.88133 * 298.99023 * 4 2 1 7 7 C 1.55158 * 102.94095 * 141.76600 * 6 4 2 8 8 C 1.54913 * 101.58168 * 324.50100 * 7 6 4 9 9 N 1.47016 * 109.88486 * 56.95942 * 4 2 1 10 10 C 1.34774 * 125.64668 * 61.43591 * 9 4 2 11 11 O 1.21275 * 120.00487 * 354.98036 * 10 9 4 12 12 C 1.50708 * 119.99639 * 174.98074 * 10 9 4 13 13 H 1.08991 * 109.47126 * 40.00079 * 12 10 9 14 14 N 1.46900 * 109.46857 * 160.00185 * 12 10 9 15 15 C 1.53005 * 109.47043 * 279.99743 * 12 10 9 16 16 C 1.53003 * 109.46854 * 175.00288 * 15 12 10 17 17 C 1.50694 * 109.46956 * 180.02562 * 16 15 12 18 18 H 1.08004 * 120.00156 * 0.02562 * 17 16 15 19 19 C 1.37877 * 120.00220 * 179.97438 * 17 16 15 20 20 N 1.31516 * 119.99717 * 0.02562 * 19 17 16 21 21 Si 1.86800 * 120.00108 * 180.02562 * 19 17 16 22 22 H 1.48498 * 109.47201 * 359.97438 * 21 19 17 23 23 H 1.48498 * 109.47084 * 119.99898 * 21 19 17 24 24 H 1.48500 * 109.46953 * 239.99997 * 21 19 17 25 25 H 1.08994 * 109.47275 * 65.89273 * 1 2 3 26 26 H 1.08999 * 109.47354 * 185.89577 * 1 2 3 27 27 H 1.09000 * 109.46758 * 305.89358 * 1 2 3 28 28 H 1.09005 * 109.46672 * 240.00466 * 2 1 3 29 29 H 1.08993 * 109.47293 * 184.64383 * 3 2 1 30 30 H 1.08999 * 109.47284 * 304.64482 * 3 2 1 31 31 H 1.08998 * 109.46947 * 64.64215 * 3 2 1 32 32 H 1.08994 * 110.71801 * 260.12850 * 6 4 2 33 33 H 1.09001 * 110.71920 * 23.40324 * 6 4 2 34 34 H 1.08996 * 111.00137 * 82.57210 * 7 6 4 35 35 H 1.09002 * 111.00278 * 206.38440 * 7 6 4 36 36 H 1.08998 * 110.36670 * 155.85076 * 8 7 6 37 37 H 1.09000 * 110.36199 * 278.06037 * 8 7 6 38 38 H 1.00903 * 110.99972 * 296.04243 * 14 12 10 39 39 H 1.00902 * 111.00255 * 59.99950 * 14 12 10 40 40 H 1.08994 * 109.46891 * 295.00381 * 15 12 10 41 41 H 1.08998 * 109.46591 * 55.00525 * 15 12 10 42 42 H 1.09003 * 109.46733 * 300.00155 * 16 15 12 43 43 H 1.09004 * 109.47041 * 60.00033 * 16 15 12 44 44 H 0.97004 * 119.99517 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2491 5 1 3.1294 -0.7565 1.2378 6 6 1.5518 0.0133 2.5155 7 6 1.2271 -1.1505 3.4889 8 6 0.6770 -2.2243 2.5173 9 7 1.4961 -2.0864 1.2954 10 6 1.7099 -3.0487 0.3765 11 8 2.3275 -2.7942 -0.6358 12 6 1.1816 -4.4413 0.6068 13 1 0.1870 -4.3840 1.0487 14 7 1.1076 -5.1550 -0.6750 15 6 2.1188 -5.1919 1.5551 16 6 1.5193 -6.5598 1.8875 17 6 2.4419 -7.2989 2.8220 18 1 3.3636 -6.8388 3.1468 19 6 2.1091 -8.5620 3.2634 20 7 0.9866 -9.1220 2.8684 21 14 3.2526 -9.4778 4.4224 22 1 4.4409 -8.6361 4.7130 23 1 2.5370 -9.7788 5.6883 24 1 3.6891 -10.7469 3.7866 25 1 -0.3633 0.4197 -0.9380 26 1 -0.3634 -1.0222 0.1056 27 1 -0.3633 0.6025 0.8325 28 1 1.8933 -0.5138 -0.8901 29 1 3.1268 1.4437 -0.0832 30 1 1.6104 1.9798 -0.8454 31 1 1.7462 1.9317 0.9286 32 1 2.3401 0.6471 2.9216 33 1 0.6572 0.5980 2.3014 34 1 2.1281 -1.5028 3.9910 35 1 0.4691 -0.8536 4.2138 36 1 0.7973 -3.2198 2.9445 37 1 -0.3725 -2.0322 2.2944 38 1 0.4454 -4.7149 -1.2963 39 1 2.0180 -5.2214 -1.1051 40 1 3.0885 -5.3269 1.0761 41 1 2.2436 -4.6171 2.4728 42 1 0.5495 -6.4247 2.3665 43 1 1.3944 -7.1345 0.9698 44 1 0.7524 -10.0105 3.1792 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000424091485.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:37:22 Heat of formation + Delta-G solvation = -79.391419 kcal Electronic energy + Delta-G solvation = -21652.449356 eV Core-core repulsion = 18602.710189 eV Total energy + Delta-G solvation = -3049.739166 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.60768 -39.17997 -36.84166 -35.51567 -34.78419 -32.57224 -31.94423 -29.22098 -28.25411 -27.85232 -25.95065 -24.14300 -22.92727 -22.19835 -20.78704 -19.64697 -18.50264 -18.10022 -17.57011 -16.94032 -16.55449 -16.36510 -15.88906 -15.54049 -15.08664 -14.59146 -14.47007 -14.22948 -14.20743 -13.85684 -13.72665 -13.43845 -13.06934 -12.91949 -12.82434 -12.76323 -12.51607 -12.34378 -12.21948 -12.03186 -11.92801 -11.73217 -11.64823 -11.49895 -11.27276 -11.16846 -10.95062 -10.50191 -9.67587 -9.60633 -8.14477 -6.24964 1.40988 1.42184 1.49934 1.54951 1.99164 2.44226 3.18524 3.39302 3.58516 3.65250 3.86207 3.86798 4.05647 4.08917 4.16269 4.21412 4.28557 4.45846 4.52363 4.61146 4.71789 4.76698 4.82828 4.88310 4.92377 4.97973 5.01792 5.04956 5.12853 5.19990 5.22922 5.28442 5.32482 5.44677 5.55772 5.57507 5.81708 5.96595 6.06535 6.29146 6.45300 6.49021 6.92960 7.08192 7.43259 8.96995 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.028217 B = 0.004344 C = 0.004040 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 992.059915 B = 6443.989898 C = 6929.613663 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.106 4.106 3 C -0.138 4.138 4 C 0.131 3.869 5 H 0.052 0.948 6 C -0.118 4.118 7 C -0.126 4.126 8 C 0.084 3.916 9 N -0.607 5.607 10 C 0.500 3.500 11 O -0.582 6.582 12 C 0.090 3.910 13 H 0.103 0.897 14 N -0.818 5.818 15 C -0.078 4.078 16 C 0.042 3.958 17 C -0.543 4.543 18 H 0.054 0.946 19 C 0.003 3.997 20 N -0.929 5.929 21 Si 0.960 3.040 22 H -0.265 1.265 23 H -0.275 1.275 24 H -0.281 1.281 25 H 0.052 0.948 26 H 0.035 0.965 27 H 0.078 0.922 28 H 0.045 0.955 29 H 0.049 0.951 30 H 0.060 0.940 31 H 0.078 0.922 32 H 0.097 0.903 33 H 0.098 0.902 34 H 0.071 0.929 35 H 0.111 0.889 36 H 0.072 0.928 37 H 0.085 0.915 38 H 0.345 0.655 39 H 0.344 0.656 40 H 0.038 0.962 41 H 0.063 0.937 42 H -0.006 1.006 43 H 0.005 0.995 44 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.235 22.677 0.171 22.787 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.126 4.126 3 C -0.196 4.196 4 C 0.028 3.972 5 H 0.070 0.930 6 C -0.156 4.156 7 C -0.164 4.164 8 C -0.038 4.038 9 N -0.340 5.340 10 C 0.288 3.712 11 O -0.462 6.462 12 C -0.025 4.025 13 H 0.120 0.880 14 N -0.346 5.346 15 C -0.116 4.116 16 C 0.005 3.995 17 C -0.581 4.581 18 H 0.072 0.928 19 C -0.195 4.195 20 N -0.569 5.569 21 Si 0.785 3.215 22 H -0.189 1.189 23 H -0.201 1.201 24 H -0.207 1.207 25 H 0.072 0.928 26 H 0.054 0.946 27 H 0.097 0.903 28 H 0.063 0.937 29 H 0.068 0.932 30 H 0.079 0.921 31 H 0.097 0.903 32 H 0.115 0.885 33 H 0.117 0.883 34 H 0.090 0.910 35 H 0.129 0.871 36 H 0.091 0.909 37 H 0.103 0.897 38 H 0.158 0.842 39 H 0.158 0.842 40 H 0.057 0.943 41 H 0.082 0.918 42 H 0.013 0.987 43 H 0.023 0.977 44 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -2.258 21.958 0.032 22.073 hybrid contribution 0.908 -0.226 -0.261 0.971 sum -1.350 21.732 -0.229 21.775 Atomic orbital electron populations 1.21769 0.94252 1.01090 1.02264 1.21376 0.96916 0.97091 0.97202 1.21774 1.00706 0.93948 1.03137 1.21803 0.97087 0.81294 0.97027 0.92994 1.22795 1.03299 0.97342 0.92151 1.22786 1.02472 0.94125 0.97021 1.22736 0.95483 1.01313 0.84277 1.48767 1.49942 1.11846 1.23397 1.22024 0.79322 0.87798 0.82096 1.90608 1.43707 1.83024 1.28888 1.21564 1.00948 0.86789 0.93241 0.87956 1.58997 1.14736 1.54924 1.05963 1.21353 0.96692 0.97097 0.96504 1.18804 0.94406 0.91212 0.95083 1.21722 1.06475 1.01527 1.28394 0.92792 1.25892 0.96807 0.98521 0.98250 1.70115 1.24731 1.15983 1.46091 0.85477 0.79057 0.78349 0.78614 1.18890 1.20088 1.20682 0.92850 0.94555 0.90333 0.93688 0.93177 0.92082 0.90321 0.88480 0.88343 0.91046 0.87076 0.90948 0.89675 0.84170 0.84203 0.94280 0.91819 0.98718 0.97676 0.92887 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.55 8.75 71.98 0.63 -1.92 16 2 C -0.11 -2.28 2.62 -10.79 -0.03 -2.31 16 3 C -0.14 -2.13 9.03 71.98 0.65 -1.48 16 4 C 0.13 2.90 2.72 45.34 0.12 3.02 16 5 H 0.05 1.34 8.14 -2.39 -0.02 1.32 16 6 C -0.12 -1.62 5.09 31.79 0.16 -1.46 16 7 C -0.13 -1.88 7.09 31.99 0.23 -1.65 16 8 C 0.08 1.76 6.41 86.80 0.56 2.32 16 9 N -0.61 -16.09 2.11 -787.26 -1.66 -17.75 16 10 C 0.50 16.81 6.91 87.66 0.61 17.41 16 11 O -0.58 -22.70 15.14 -3.01 -0.05 -22.75 16 12 C 0.09 3.21 2.42 44.17 0.11 3.32 16 13 H 0.10 3.46 7.53 -2.39 -0.02 3.44 16 14 N -0.82 -29.45 8.44 -171.79 -1.45 -30.90 16 15 C -0.08 -3.30 4.65 30.60 0.14 -3.16 16 16 C 0.04 2.23 4.86 29.85 0.15 2.38 16 17 C -0.54 -31.22 9.11 25.60 0.23 -30.98 16 18 H 0.05 3.01 7.74 -2.91 -0.02 2.99 16 19 C 0.00 0.18 5.46 84.65 0.46 0.65 16 20 N -0.93 -56.85 13.29 21.45 0.28 -56.56 16 21 Si 0.96 44.63 29.54 68.60 2.03 46.66 16 22 H -0.26 -11.81 7.11 99.48 0.71 -11.10 16 23 H -0.28 -12.32 7.11 99.48 0.71 -11.62 16 24 H -0.28 -12.85 7.11 99.48 0.71 -12.14 16 25 H 0.05 0.96 8.14 -2.39 -0.02 0.94 16 26 H 0.04 0.81 7.33 -2.39 -0.02 0.79 16 27 H 0.08 1.08 6.35 -2.39 -0.02 1.06 16 28 H 0.04 1.32 6.77 -2.38 -0.02 1.31 16 29 H 0.05 0.81 8.14 -2.39 -0.02 0.79 16 30 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 31 H 0.08 0.88 6.85 -2.39 -0.02 0.86 16 32 H 0.10 1.04 8.14 -2.39 -0.02 1.02 16 33 H 0.10 1.05 5.60 -2.39 -0.01 1.03 16 34 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 35 H 0.11 1.11 8.14 -2.39 -0.02 1.09 16 36 H 0.07 1.79 6.31 -2.39 -0.02 1.77 16 37 H 0.09 1.52 8.14 -2.39 -0.02 1.50 16 38 H 0.35 10.80 9.06 -89.69 -0.81 9.99 16 39 H 0.34 12.71 8.58 -89.69 -0.77 11.94 16 40 H 0.04 1.73 8.14 -2.39 -0.02 1.72 16 41 H 0.06 2.53 6.99 -2.39 -0.02 2.51 16 42 H -0.01 -0.31 8.14 -2.39 -0.02 -0.33 16 43 H 0.00 0.28 7.75 -2.38 -0.02 0.26 16 44 H 0.26 15.04 8.31 -92.71 -0.77 14.27 16 Total: -1.00 -70.29 341.53 2.58 -67.72 By element: Atomic # 1 Polarization: 28.04 SS G_CDS: -0.60 Total: 27.44 kcal Atomic # 6 Polarization: -17.88 SS G_CDS: 4.01 Total: -13.86 kcal Atomic # 7 Polarization: -102.38 SS G_CDS: -2.82 Total: -105.21 kcal Atomic # 8 Polarization: -22.70 SS G_CDS: -0.05 Total: -22.75 kcal Atomic # 14 Polarization: 44.63 SS G_CDS: 2.03 Total: 46.66 kcal Total: -70.29 2.58 -67.72 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424091485.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.673 kcal (2) G-P(sol) polarization free energy of solvation -70.294 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.967 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.576 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.718 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.391 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds