Wall clock time and date at job start Mon Mar 30 2020 00:58:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52998 * 109.47026 * 2 1 4 4 C 1.53001 * 109.47325 * 120.00591 * 2 1 3 5 5 N 1.46500 * 109.47219 * 64.80927 * 4 2 1 6 6 C 1.34779 * 119.99637 * 93.98110 * 5 4 2 7 7 O 1.21283 * 119.99905 * 185.17656 * 6 5 4 8 8 C 1.50695 * 120.00047 * 5.18024 * 6 5 4 9 9 H 1.09003 * 109.47118 * 30.80835 * 8 6 5 10 10 N 1.46901 * 109.47354 * 150.80984 * 8 6 5 11 11 C 1.52999 * 109.47469 * 270.80794 * 8 6 5 12 12 C 1.52995 * 109.47521 * 178.08627 * 11 8 6 13 13 C 1.50698 * 109.47381 * 179.97438 * 12 11 8 14 14 H 1.08004 * 119.99902 * 0.02562 * 13 12 11 15 15 C 1.37879 * 120.00291 * 180.02562 * 13 12 11 16 16 N 1.31517 * 119.99973 * 180.02562 * 15 13 12 17 17 Si 1.86794 * 119.99814 * 0.02562 * 15 13 12 18 18 H 1.48506 * 109.47112 * 89.99936 * 17 15 13 19 19 H 1.48496 * 109.47253 * 209.99949 * 17 15 13 20 20 H 1.48504 * 109.47475 * 329.99799 * 17 15 13 21 21 C 1.46501 * 120.00147 * 273.98303 * 5 4 2 22 22 C 1.53001 * 117.49488 * 196.53158 * 21 5 4 23 23 C 1.52994 * 117.49658 * 127.87299 * 21 5 4 24 24 H 1.09002 * 109.47125 * 59.99431 * 1 2 3 25 25 H 1.09001 * 109.46998 * 179.97438 * 1 2 3 26 26 H 1.08998 * 109.46699 * 299.99542 * 1 2 3 27 27 H 1.09006 * 109.46661 * 240.00128 * 2 1 3 28 28 H 1.09003 * 109.46591 * 180.02562 * 3 2 1 29 29 H 1.09000 * 109.47229 * 299.99916 * 3 2 1 30 30 H 1.08998 * 109.47007 * 60.00647 * 3 2 1 31 31 H 1.09000 * 109.46901 * 304.81298 * 4 2 1 32 32 H 1.08994 * 109.46962 * 184.81340 * 4 2 1 33 33 H 1.00906 * 110.99708 * 296.05145 * 10 8 6 34 34 H 1.00898 * 111.00263 * 59.99425 * 10 8 6 35 35 H 1.09005 * 109.47143 * 298.09419 * 11 8 6 36 36 H 1.09008 * 109.46777 * 58.08767 * 11 8 6 37 37 H 1.09000 * 109.47143 * 300.00322 * 12 11 8 38 38 H 1.09008 * 109.46981 * 60.00265 * 12 11 8 39 39 H 0.97003 * 119.99612 * 180.02562 * 16 15 13 40 40 H 1.08998 * 115.54960 * 342.19710 * 21 5 4 41 41 H 1.08995 * 117.49977 * 0.02562 * 22 21 5 42 42 H 1.08999 * 117.49459 * 145.02032 * 22 21 5 43 43 H 1.09005 * 117.49847 * 214.97424 * 23 21 5 44 44 H 1.08995 * 117.50266 * 359.97438 * 23 21 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7214 1.2492 5 7 1.6486 -2.1320 1.1926 6 6 2.4983 -3.0472 0.6858 7 8 2.1404 -4.1983 0.5518 8 6 3.8930 -2.6404 0.2856 9 1 4.2297 -1.8224 0.9224 10 7 4.8002 -3.7856 0.4389 11 6 3.8918 -2.1828 -1.1744 12 6 5.2979 -1.7248 -1.5666 13 6 5.2968 -1.2747 -3.0048 14 1 4.3842 -1.3112 -3.5813 15 6 6.4607 -0.8162 -3.5846 16 7 6.4595 -0.4229 -4.8396 17 14 8.0391 -0.7537 -2.5877 18 1 8.7670 -2.0400 -2.7321 19 1 8.8929 0.3564 -3.0816 20 1 7.7123 -0.5278 -1.1568 21 6 0.3336 -2.5477 1.6868 22 6 0.1222 -4.0372 1.9652 23 6 -0.5410 -3.3835 0.7503 24 1 -0.3633 0.5139 -0.8899 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.8933 -0.5139 -0.8901 28 1 3.1300 1.4424 -0.0005 29 1 1.6767 1.9563 -0.8900 30 1 1.6767 1.9563 0.8900 31 1 1.6081 -0.2598 2.1371 32 1 3.1266 -0.6473 1.2933 33 1 4.8682 -4.0661 1.4058 34 1 4.5092 -4.5578 -0.1418 35 1 3.5876 -3.0110 -1.8145 36 1 3.1931 -1.3548 -1.2950 37 1 5.6020 -0.8966 -0.9265 38 1 5.9966 -2.5528 -1.4460 39 1 7.2784 -0.1007 -5.2476 40 1 -0.1681 -1.8368 2.3432 41 1 0.9615 -4.7077 1.7810 42 1 -0.5191 -4.3062 2.8045 43 1 -1.6184 -3.2229 0.7909 44 1 -0.1384 -3.6238 -0.2337 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000424097952.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:58:28 Heat of formation + Delta-G solvation = -12.427942 kcal Electronic energy + Delta-G solvation = -22005.544946 eV Core-core repulsion = 18958.709534 eV Total energy + Delta-G solvation = -3046.835412 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.66004 -37.13979 -36.50196 -34.82637 -32.98701 -32.62489 -30.49679 -27.26450 -26.86403 -26.08789 -24.15564 -22.39829 -21.99518 -20.67320 -19.99432 -18.71699 -17.18539 -16.79000 -16.55546 -15.47357 -15.06227 -14.85559 -14.69118 -14.24318 -14.06645 -13.85582 -13.31217 -13.25409 -12.65232 -12.57449 -12.41335 -12.20109 -11.98396 -11.72941 -11.59789 -11.26241 -11.13904 -11.06389 -10.91227 -10.65580 -10.52252 -10.36796 -10.00014 -9.82276 -9.65235 -9.52097 -9.08845 -8.51059 -8.44281 -8.25352 -5.98392 -3.95680 2.60047 2.90703 3.37870 3.44439 3.49793 3.89020 4.48834 4.52126 4.73939 4.77887 4.85555 4.88727 5.01919 5.05467 5.10841 5.31382 5.35448 5.37743 5.53337 5.59664 5.65053 5.68221 5.72096 5.75850 5.89197 5.96809 6.01277 6.15226 6.22254 6.32785 6.36167 6.46952 6.53966 6.72378 6.94095 7.24005 7.40360 7.41678 7.58790 7.65260 7.87690 8.23734 8.59434 9.06560 9.64855 11.15147 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.020564 B = 0.005720 C = 0.004980 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1361.250897 B = 4893.601072 C = 5620.620271 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.123 4.123 3 C -0.145 4.145 4 C 0.112 3.888 5 N -0.582 5.582 6 C 0.485 3.515 7 O -0.542 6.542 8 C 0.073 3.927 9 H 0.097 0.903 10 N -0.811 5.811 11 C -0.092 4.092 12 C -0.002 4.002 13 C -0.519 4.519 14 H 0.068 0.932 15 C 0.066 3.934 16 N -0.907 5.907 17 Si 0.881 3.119 18 H -0.277 1.277 19 H -0.291 1.291 20 H -0.264 1.264 21 C 0.073 3.927 22 C -0.195 4.195 23 C -0.186 4.186 24 H 0.053 0.947 25 H 0.062 0.938 26 H 0.048 0.952 27 H 0.088 0.912 28 H 0.063 0.937 29 H 0.060 0.940 30 H 0.050 0.950 31 H 0.076 0.924 32 H 0.089 0.911 33 H 0.333 0.667 34 H 0.350 0.650 35 H 0.058 0.942 36 H 0.066 0.934 37 H 0.012 0.988 38 H 0.029 0.971 39 H 0.262 0.738 40 H 0.123 0.877 41 H 0.135 0.865 42 H 0.085 0.915 43 H 0.092 0.908 44 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.094 -0.165 16.025 20.077 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.142 4.142 3 C -0.203 4.203 4 C -0.010 4.010 5 N -0.312 5.312 6 C 0.274 3.726 7 O -0.420 6.420 8 C -0.042 4.042 9 H 0.114 0.886 10 N -0.340 5.340 11 C -0.130 4.130 12 C -0.039 4.039 13 C -0.557 4.557 14 H 0.086 0.914 15 C -0.134 4.134 16 N -0.546 5.546 17 Si 0.709 3.291 18 H -0.203 1.203 19 H -0.217 1.217 20 H -0.189 1.189 21 C -0.032 4.032 22 C -0.232 4.232 23 C -0.225 4.225 24 H 0.072 0.928 25 H 0.081 0.919 26 H 0.067 0.933 27 H 0.106 0.894 28 H 0.082 0.918 29 H 0.079 0.921 30 H 0.069 0.931 31 H 0.094 0.906 32 H 0.107 0.893 33 H 0.145 0.855 34 H 0.165 0.835 35 H 0.076 0.924 36 H 0.085 0.915 37 H 0.030 0.970 38 H 0.047 0.953 39 H 0.071 0.929 40 H 0.141 0.859 41 H 0.153 0.847 42 H 0.103 0.897 43 H 0.110 0.890 44 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -11.567 -0.207 15.529 19.365 hybrid contribution -0.164 -0.277 0.722 0.790 sum -11.731 -0.484 16.251 20.048 Atomic orbital electron populations 1.21924 0.95194 1.02276 1.01268 1.21732 0.96381 0.96944 0.99133 1.21764 1.01881 0.94978 1.01672 1.21843 1.01174 0.79586 0.98437 1.47512 1.14740 1.08004 1.60992 1.22628 0.88996 0.85314 0.75698 1.90494 1.77798 1.19828 1.53927 1.21943 0.85460 0.95413 1.01400 0.88570 1.59057 1.51232 1.11014 1.12668 1.21618 1.01582 1.00339 0.89488 1.19452 0.91757 0.96204 0.96515 1.21171 0.97072 1.42291 0.95206 0.91359 1.25000 0.98909 0.94805 0.94710 1.69928 1.27995 1.44400 1.12270 0.86755 0.83542 0.77672 0.81149 1.20318 1.21747 1.18887 1.21630 0.85811 0.94338 1.01412 1.23840 1.04564 0.96009 0.98797 1.23227 0.97950 1.04748 0.96588 0.92783 0.91889 0.93259 0.89353 0.91802 0.92140 0.93065 0.90608 0.89275 0.85509 0.83517 0.92364 0.91530 0.96999 0.95292 0.92876 0.85935 0.84725 0.89709 0.88994 0.88448 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.56 8.71 37.16 0.32 -1.24 16 2 C -0.12 -1.44 2.97 -90.62 -0.27 -1.71 16 3 C -0.15 -1.60 9.19 37.16 0.34 -1.26 16 4 C 0.11 1.22 4.86 -4.04 -0.02 1.20 16 5 N -0.58 -7.27 2.73 -166.11 -0.45 -7.72 16 6 C 0.49 7.34 6.64 -10.99 -0.07 7.27 16 7 O -0.54 -9.28 12.09 5.56 0.07 -9.21 16 8 C 0.07 1.16 2.50 -68.87 -0.17 0.99 16 9 H 0.10 1.41 5.99 -51.93 -0.31 1.10 16 10 N -0.81 -12.67 8.39 -5.65 -0.05 -12.71 16 11 C -0.09 -1.79 4.80 -26.73 -0.13 -1.92 16 12 C 0.00 -0.04 3.90 -27.89 -0.11 -0.15 16 13 C -0.52 -14.73 9.66 -34.44 -0.33 -15.06 16 14 H 0.07 2.09 7.99 -52.48 -0.42 1.67 16 15 C 0.07 1.94 5.47 -17.82 -0.10 1.84 16 16 N -0.91 -28.10 13.96 55.43 0.77 -27.33 16 17 Si 0.88 21.98 27.47 -169.99 -4.67 17.32 16 18 H -0.28 -6.89 7.11 56.52 0.40 -6.48 16 19 H -0.29 -7.20 7.11 56.52 0.40 -6.79 16 20 H -0.26 -6.30 6.54 56.52 0.37 -5.93 16 21 C 0.07 0.82 4.80 -67.93 -0.33 0.49 16 22 C -0.19 -2.34 9.63 -26.69 -0.26 -2.60 16 23 C -0.19 -2.22 8.73 -26.70 -0.23 -2.45 16 24 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 25 H 0.06 0.70 5.18 -51.93 -0.27 0.43 16 26 H 0.05 0.44 8.14 -51.93 -0.42 0.01 16 27 H 0.09 1.29 5.26 -51.93 -0.27 1.02 16 28 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 29 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 30 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.08 0.66 8.09 -51.93 -0.42 0.24 16 32 H 0.09 0.98 5.60 -51.93 -0.29 0.69 16 33 H 0.33 4.42 9.06 -39.29 -0.36 4.06 16 34 H 0.35 5.64 8.55 -39.29 -0.34 5.30 16 35 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 36 H 0.07 1.25 4.98 -51.92 -0.26 0.99 16 37 H 0.01 0.27 7.20 -51.93 -0.37 -0.10 16 38 H 0.03 0.70 7.08 -51.92 -0.37 0.33 16 39 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 40 H 0.12 1.10 8.13 -51.93 -0.42 0.68 16 41 H 0.14 2.00 5.20 -52.17 -0.27 1.72 16 42 H 0.08 0.85 8.14 -51.93 -0.42 0.42 16 43 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16 44 H 0.10 1.43 7.61 -51.93 -0.40 1.03 16 LS Contribution 336.63 15.07 5.07 5.07 Total: -1.00 -31.54 336.63 -7.92 -39.46 By element: Atomic # 1 Polarization: 17.04 SS G_CDS: -7.31 Total: 9.73 kcal Atomic # 6 Polarization: -13.25 SS G_CDS: -1.35 Total: -14.60 kcal Atomic # 7 Polarization: -48.04 SS G_CDS: 0.27 Total: -47.77 kcal Atomic # 8 Polarization: -9.28 SS G_CDS: 0.07 Total: -9.21 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -4.67 Total: 17.32 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -31.54 -7.92 -39.46 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424097952.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.036 kcal (2) G-P(sol) polarization free energy of solvation -31.542 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.507 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.921 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.464 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.428 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds