Wall clock time and date at job start Mon Mar 30 2020 00:58:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52998 * 109.47026 * 2 1 4 4 C 1.53001 * 109.47325 * 120.00591 * 2 1 3 5 5 N 1.46500 * 109.47219 * 64.80927 * 4 2 1 6 6 C 1.34779 * 119.99637 * 93.98110 * 5 4 2 7 7 O 1.21283 * 119.99905 * 185.17656 * 6 5 4 8 8 C 1.50695 * 120.00047 * 5.18024 * 6 5 4 9 9 H 1.09003 * 109.47118 * 30.80835 * 8 6 5 10 10 N 1.46901 * 109.47354 * 150.80984 * 8 6 5 11 11 C 1.52999 * 109.47469 * 270.80794 * 8 6 5 12 12 C 1.52995 * 109.47521 * 178.08627 * 11 8 6 13 13 C 1.50698 * 109.47381 * 179.97438 * 12 11 8 14 14 H 1.08004 * 119.99902 * 0.02562 * 13 12 11 15 15 C 1.37879 * 120.00291 * 180.02562 * 13 12 11 16 16 N 1.31517 * 119.99973 * 180.02562 * 15 13 12 17 17 Si 1.86794 * 119.99814 * 0.02562 * 15 13 12 18 18 H 1.48506 * 109.47112 * 89.99936 * 17 15 13 19 19 H 1.48496 * 109.47253 * 209.99949 * 17 15 13 20 20 H 1.48504 * 109.47475 * 329.99799 * 17 15 13 21 21 C 1.46501 * 120.00147 * 273.98303 * 5 4 2 22 22 C 1.53001 * 117.49488 * 196.53158 * 21 5 4 23 23 C 1.52994 * 117.49658 * 127.87299 * 21 5 4 24 24 H 1.09002 * 109.47125 * 59.99431 * 1 2 3 25 25 H 1.09001 * 109.46998 * 179.97438 * 1 2 3 26 26 H 1.08998 * 109.46699 * 299.99542 * 1 2 3 27 27 H 1.09006 * 109.46661 * 240.00128 * 2 1 3 28 28 H 1.09003 * 109.46591 * 180.02562 * 3 2 1 29 29 H 1.09000 * 109.47229 * 299.99916 * 3 2 1 30 30 H 1.08998 * 109.47007 * 60.00647 * 3 2 1 31 31 H 1.09000 * 109.46901 * 304.81298 * 4 2 1 32 32 H 1.08994 * 109.46962 * 184.81340 * 4 2 1 33 33 H 1.00906 * 110.99708 * 296.05145 * 10 8 6 34 34 H 1.00898 * 111.00263 * 59.99425 * 10 8 6 35 35 H 1.09005 * 109.47143 * 298.09419 * 11 8 6 36 36 H 1.09008 * 109.46777 * 58.08767 * 11 8 6 37 37 H 1.09000 * 109.47143 * 300.00322 * 12 11 8 38 38 H 1.09008 * 109.46981 * 60.00265 * 12 11 8 39 39 H 0.97003 * 119.99612 * 180.02562 * 16 15 13 40 40 H 1.08998 * 115.54960 * 342.19710 * 21 5 4 41 41 H 1.08995 * 117.49977 * 0.02562 * 22 21 5 42 42 H 1.08999 * 117.49459 * 145.02032 * 22 21 5 43 43 H 1.09005 * 117.49847 * 214.97424 * 23 21 5 44 44 H 1.08995 * 117.50266 * 359.97438 * 23 21 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7214 1.2492 5 7 1.6486 -2.1320 1.1926 6 6 2.4983 -3.0472 0.6858 7 8 2.1404 -4.1983 0.5518 8 6 3.8930 -2.6404 0.2856 9 1 4.2297 -1.8224 0.9224 10 7 4.8002 -3.7856 0.4389 11 6 3.8918 -2.1828 -1.1744 12 6 5.2979 -1.7248 -1.5666 13 6 5.2968 -1.2747 -3.0048 14 1 4.3842 -1.3112 -3.5813 15 6 6.4607 -0.8162 -3.5846 16 7 6.4595 -0.4229 -4.8396 17 14 8.0391 -0.7537 -2.5877 18 1 8.7670 -2.0400 -2.7321 19 1 8.8929 0.3564 -3.0816 20 1 7.7123 -0.5278 -1.1568 21 6 0.3336 -2.5477 1.6868 22 6 0.1222 -4.0372 1.9652 23 6 -0.5410 -3.3835 0.7503 24 1 -0.3633 0.5139 -0.8899 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.8933 -0.5139 -0.8901 28 1 3.1300 1.4424 -0.0005 29 1 1.6767 1.9563 -0.8900 30 1 1.6767 1.9563 0.8900 31 1 1.6081 -0.2598 2.1371 32 1 3.1266 -0.6473 1.2933 33 1 4.8682 -4.0661 1.4058 34 1 4.5092 -4.5578 -0.1418 35 1 3.5876 -3.0110 -1.8145 36 1 3.1931 -1.3548 -1.2950 37 1 5.6020 -0.8966 -0.9265 38 1 5.9966 -2.5528 -1.4460 39 1 7.2784 -0.1007 -5.2476 40 1 -0.1681 -1.8368 2.3432 41 1 0.9615 -4.7077 1.7810 42 1 -0.5191 -4.3062 2.8045 43 1 -1.6184 -3.2229 0.7909 44 1 -0.1384 -3.6238 -0.2337 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000424097952.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:58:27 Heat of formation + Delta-G solvation = -33.656540 kcal Electronic energy + Delta-G solvation = -22006.465487 eV Core-core repulsion = 18958.709534 eV Total energy + Delta-G solvation = -3047.755953 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.76980 -38.22475 -37.61791 -36.14736 -34.77837 -33.84665 -32.30070 -28.63753 -27.95808 -27.04078 -25.69918 -23.37738 -23.23081 -22.07900 -21.24695 -19.92755 -18.83395 -18.17141 -17.81671 -16.71092 -16.37242 -16.04484 -15.83478 -15.70391 -15.34645 -14.99845 -14.77321 -14.51064 -14.23639 -13.88388 -13.60766 -13.49637 -13.04170 -12.87377 -12.83902 -12.67254 -12.47034 -12.20035 -12.06224 -11.94768 -11.69878 -11.67234 -11.53027 -11.33774 -11.22959 -11.14164 -10.85207 -10.68383 -9.62635 -9.36613 -8.24911 -6.28054 1.40363 1.41613 1.42118 1.54966 1.90730 2.41170 2.97010 3.11793 3.37714 3.61417 3.81546 3.92183 3.97615 4.03231 4.09200 4.12902 4.24361 4.27050 4.51965 4.58362 4.67803 4.74252 4.80422 4.82604 4.85541 4.89268 5.05431 5.06298 5.10408 5.12618 5.33394 5.36212 5.43206 5.48541 5.56227 5.66869 5.72397 5.76714 6.04208 6.31089 6.33230 6.48283 6.79938 7.09724 7.36339 8.92163 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.020564 B = 0.005720 C = 0.004980 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1361.250897 B = 4893.601072 C = 5620.620271 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.122 4.122 3 C -0.142 4.142 4 C 0.110 3.890 5 N -0.576 5.576 6 C 0.483 3.517 7 O -0.566 6.566 8 C 0.082 3.918 9 H 0.117 0.883 10 N -0.818 5.818 11 C -0.083 4.083 12 C 0.007 3.993 13 C -0.529 4.529 14 H 0.025 0.975 15 C 0.005 3.995 16 N -0.955 5.955 17 Si 0.952 3.048 18 H -0.273 1.273 19 H -0.286 1.286 20 H -0.240 1.240 21 C 0.078 3.922 22 C -0.198 4.198 23 C -0.191 4.191 24 H 0.045 0.955 25 H 0.055 0.945 26 H 0.076 0.924 27 H 0.049 0.951 28 H 0.051 0.949 29 H 0.049 0.951 30 H 0.079 0.921 31 H 0.113 0.887 32 H 0.088 0.912 33 H 0.348 0.652 34 H 0.345 0.655 35 H 0.031 0.969 36 H 0.070 0.930 37 H 0.023 0.977 38 H 0.026 0.974 39 H 0.265 0.735 40 H 0.160 0.840 41 H 0.105 0.895 42 H 0.110 0.890 43 H 0.117 0.883 44 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.365 0.827 19.566 23.160 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.142 4.142 3 C -0.200 4.200 4 C -0.012 4.012 5 N -0.305 5.305 6 C 0.271 3.729 7 O -0.447 6.447 8 C -0.033 4.033 9 H 0.134 0.866 10 N -0.348 5.348 11 C -0.121 4.121 12 C -0.030 4.030 13 C -0.567 4.567 14 H 0.043 0.957 15 C -0.191 4.191 16 N -0.596 5.596 17 Si 0.775 3.225 18 H -0.198 1.198 19 H -0.212 1.212 20 H -0.164 1.164 21 C -0.026 4.026 22 C -0.236 4.236 23 C -0.230 4.230 24 H 0.064 0.936 25 H 0.074 0.926 26 H 0.095 0.905 27 H 0.067 0.933 28 H 0.070 0.930 29 H 0.068 0.932 30 H 0.098 0.902 31 H 0.131 0.869 32 H 0.107 0.893 33 H 0.162 0.838 34 H 0.159 0.841 35 H 0.050 0.950 36 H 0.088 0.912 37 H 0.042 0.958 38 H 0.044 0.956 39 H 0.073 0.927 40 H 0.178 0.822 41 H 0.123 0.877 42 H 0.129 0.871 43 H 0.135 0.865 44 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -11.861 0.799 19.099 22.497 hybrid contribution -0.183 -0.588 -0.476 0.778 sum -12.044 0.212 18.624 22.180 Atomic orbital electron populations 1.21887 0.94013 1.02073 1.02251 1.21672 0.97386 0.97089 0.98019 1.21740 1.01080 0.94614 1.02593 1.22022 1.01499 0.78432 0.99269 1.47540 1.14888 1.08305 1.59755 1.22391 0.89066 0.85381 0.76098 1.90516 1.78152 1.20975 1.55024 1.21730 0.86610 0.96139 0.98869 0.86575 1.59039 1.51136 1.10810 1.13775 1.21392 0.99262 0.99568 0.91884 1.19312 0.94065 0.96165 0.93457 1.21520 0.95590 1.42122 0.97497 0.95681 1.25980 1.02985 0.94338 0.95814 1.70087 1.29258 1.45849 1.14410 0.85633 0.78440 0.77857 0.80524 1.19825 1.21173 1.16360 1.21984 0.84833 0.94679 1.01060 1.23751 1.04094 0.96126 0.99579 1.23168 0.99315 1.05580 0.94891 0.93558 0.92633 0.90547 0.93261 0.93015 0.93191 0.90183 0.86904 0.89345 0.83806 0.84102 0.94985 0.91186 0.95834 0.95573 0.92656 0.82246 0.87697 0.87141 0.86532 0.92080 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.71 8.71 71.98 0.63 -2.09 16 2 C -0.12 -2.68 2.97 -10.79 -0.03 -2.71 16 3 C -0.14 -2.88 9.19 71.98 0.66 -2.22 16 4 C 0.11 2.04 4.86 86.38 0.42 2.46 16 5 N -0.58 -13.20 2.73 -797.84 -2.18 -15.37 16 6 C 0.48 14.29 6.64 87.66 0.58 14.87 16 7 O -0.57 -19.61 12.09 -3.04 -0.04 -19.64 16 8 C 0.08 2.52 2.50 44.17 0.11 2.63 16 9 H 0.12 3.12 5.99 -2.39 -0.01 3.10 16 10 N -0.82 -24.82 8.39 -171.80 -1.44 -26.26 16 11 C -0.08 -3.28 4.80 30.59 0.15 -3.14 16 12 C 0.01 0.35 3.90 29.85 0.12 0.47 16 13 C -0.53 -30.99 9.66 25.60 0.25 -30.74 16 14 H 0.02 1.63 7.99 -2.91 -0.02 1.60 16 15 C 0.01 0.30 5.47 84.65 0.46 0.76 16 16 N -0.95 -60.91 13.96 21.45 0.30 -60.61 16 17 Si 0.95 45.05 27.47 68.60 1.88 46.93 16 18 H -0.27 -12.67 7.11 99.48 0.71 -11.97 16 19 H -0.29 -13.21 7.11 99.48 0.71 -12.50 16 20 H -0.24 -10.38 6.54 99.48 0.65 -9.73 16 21 C 0.08 1.53 4.80 44.99 0.22 1.75 16 22 C -0.20 -4.40 9.63 30.62 0.29 -4.10 16 23 C -0.19 -4.30 8.73 30.62 0.27 -4.03 16 24 H 0.05 0.93 8.14 -2.39 -0.02 0.91 16 25 H 0.05 1.13 5.18 -2.39 -0.01 1.11 16 26 H 0.08 1.03 8.14 -2.39 -0.02 1.01 16 27 H 0.05 1.47 5.26 -2.38 -0.01 1.46 16 28 H 0.05 1.16 8.14 -2.39 -0.02 1.14 16 29 H 0.05 1.10 8.14 -2.39 -0.02 1.08 16 30 H 0.08 1.15 8.14 -2.39 -0.02 1.14 16 31 H 0.11 1.35 8.09 -2.39 -0.02 1.33 16 32 H 0.09 1.68 5.60 -2.39 -0.01 1.67 16 33 H 0.35 8.70 9.06 -89.69 -0.81 7.89 16 34 H 0.35 11.17 8.55 -89.70 -0.77 10.41 16 35 H 0.03 1.40 8.14 -2.38 -0.02 1.38 16 36 H 0.07 2.72 4.98 -2.38 -0.01 2.71 16 37 H 0.02 1.05 7.20 -2.39 -0.02 1.03 16 38 H 0.03 1.24 7.08 -2.38 -0.02 1.22 16 39 H 0.26 15.75 8.31 -92.71 -0.77 14.98 16 40 H 0.16 2.00 8.13 -2.39 -0.02 1.99 16 41 H 0.11 3.07 5.20 -6.24 -0.03 3.04 16 42 H 0.11 1.87 8.14 -2.39 -0.02 1.85 16 43 H 0.12 2.01 8.14 -2.38 -0.02 1.99 16 44 H 0.06 1.84 7.61 -2.39 -0.02 1.82 16 Total: -1.00 -71.40 336.63 2.00 -69.40 By element: Atomic # 1 Polarization: 32.30 SS G_CDS: -0.65 Total: 31.65 kcal Atomic # 6 Polarization: -30.22 SS G_CDS: 4.12 Total: -26.10 kcal Atomic # 7 Polarization: -98.92 SS G_CDS: -3.32 Total: -102.24 kcal Atomic # 8 Polarization: -19.61 SS G_CDS: -0.04 Total: -19.64 kcal Atomic # 14 Polarization: 45.05 SS G_CDS: 1.88 Total: 46.93 kcal Total: -71.40 2.00 -69.40 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424097952.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.742 kcal (2) G-P(sol) polarization free energy of solvation -71.395 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.654 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.997 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.398 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.657 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds